Wall clock time and date at job start Wed Apr 1 2020 05:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00245 * 2 1 4 4 H 1.48497 * 109.46914 * 270.00314 * 3 2 1 5 5 H 1.48501 * 109.46989 * 30.00398 * 3 2 1 6 6 H 1.48502 * 109.46845 * 150.00194 * 3 2 1 7 7 C 1.38803 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99725 * 0.02562 * 7 2 1 9 9 S 1.76196 * 120.00036 * 179.97438 * 7 2 1 10 10 C 1.81006 * 100.00069 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47343 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47377 * 179.97438 * 11 10 9 13 13 O 1.45196 * 109.47183 * 180.02562 * 12 11 10 14 14 C 1.34709 * 116.99971 * 180.02562 * 13 12 11 15 15 O 1.21471 * 120.00215 * 0.02562 * 14 13 12 16 16 C 1.47723 * 120.00179 * 179.97438 * 14 13 12 17 17 C 1.39633 * 120.15316 * 179.97438 * 16 14 13 18 18 C 1.37938 * 119.84852 * 180.30600 * 17 16 14 19 19 C 1.38372 * 120.14963 * 359.44003 * 18 17 16 20 20 S 1.76206 * 119.84830 * 180.28075 * 19 18 17 21 21 O 1.42092 * 106.40444 * 270.28197 * 20 19 18 22 22 O 1.42102 * 106.39725 * 43.20085 * 20 19 18 23 23 F 1.61000 * 107.21649 * 156.73575 * 20 19 18 24 24 C 1.38363 * 120.30454 * 0.56443 * 19 18 17 25 25 C 1.37948 * 120.14806 * 359.71588 * 24 19 18 26 26 H 0.97003 * 120.00029 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47124 * 59.99564 * 10 9 7 28 28 H 1.09004 * 109.46869 * 300.00168 * 10 9 7 29 29 H 1.09003 * 109.46870 * 59.99655 * 11 10 9 30 30 H 1.09003 * 109.46681 * 300.00095 * 11 10 9 31 31 H 1.09004 * 109.46780 * 59.99792 * 12 11 10 32 32 H 1.09004 * 109.47030 * 300.00133 * 12 11 10 33 33 H 1.08002 * 120.07109 * 0.02562 * 17 16 14 34 34 H 1.07998 * 119.92553 * 179.70097 * 18 17 16 35 35 H 1.07997 * 119.93022 * 179.74159 * 24 19 18 36 36 H 1.08004 * 120.07515 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4701 -2.1374 -0.0014 9 16 3.7722 -1.2022 -0.0012 10 6 4.0864 -2.9847 -0.0025 11 6 5.5956 -3.2366 -0.0026 12 6 5.8612 -4.7433 -0.0031 13 8 7.2934 -4.9823 -0.0026 14 6 7.6990 -6.2668 -0.0035 15 8 6.8789 -7.1628 -0.0051 16 6 9.1414 -6.5859 -0.0036 17 6 9.5654 -7.9163 -0.0039 18 6 10.9138 -8.2071 0.0023 19 6 11.8454 -7.1840 -0.0027 20 16 13.5659 -7.5646 -0.0021 21 8 13.9571 -7.6519 1.3611 22 8 13.7424 -8.6256 -0.9308 23 9 14.3360 -6.2908 -0.6156 24 6 11.4323 -5.8635 -0.0023 25 6 10.0870 -5.5585 -0.0028 26 1 -0.4850 0.8401 0.0004 27 1 3.6431 -3.4311 -0.8926 28 1 3.6438 -3.4323 0.8873 29 1 6.0385 -2.7902 0.8877 30 1 6.0385 -2.7888 -0.8923 31 1 5.4182 -5.1900 -0.8933 32 1 5.4182 -5.1906 0.8868 33 1 8.8392 -8.7158 -0.0045 34 1 11.2431 -9.2357 0.0070 35 1 12.1646 -5.0698 -0.0021 36 1 9.7658 -4.5273 -0.0021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490535772.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:55 Heat of formation + Delta-G solvation = -195.871307 kcal Electronic energy + Delta-G solvation = -23815.972063 eV Core-core repulsion = 19625.857486 eV Total energy + Delta-G solvation = -4190.114577 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.038 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -48.88148 -41.07871 -39.52296 -38.27589 -37.01255 -37.00023 -33.84891 -32.52322 -32.49618 -31.99160 -27.20809 -25.78363 -25.14442 -23.75909 -21.83328 -21.56334 -21.00248 -19.34753 -18.44186 -18.29023 -17.50769 -17.45860 -17.27600 -16.91701 -15.82074 -15.70080 -15.32118 -15.06394 -15.03265 -14.92991 -14.73604 -14.40757 -14.15363 -13.83169 -13.53084 -13.32683 -13.16811 -13.04470 -12.97038 -12.89808 -12.63798 -12.14146 -11.87350 -11.65655 -11.38185 -11.18844 -11.07174 -11.05630 -10.54636 -10.36634 -10.29252 -9.90995 -9.88870 -9.08161 -8.69012 -7.05213 -6.35360 -4.09492 -0.90941 -0.51910 0.46265 1.76355 2.08490 2.12459 2.42032 2.84027 2.92048 3.24271 3.38527 3.47577 3.58500 3.81644 3.95139 4.10873 4.24441 4.39642 4.44429 4.69136 4.75258 4.88507 4.95865 4.97274 5.03433 5.13964 5.16916 5.23796 5.43337 5.55084 5.61700 5.86546 5.87874 6.11826 6.21323 6.43589 7.27929 7.88071 8.37245 9.09743 10.73966 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.027374 B = 0.001592 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.622929 B =17586.807495 C =18416.146070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.238 1.238 7 C -0.506 4.506 8 H 0.089 0.911 9 S -0.205 6.205 10 C -0.085 4.085 11 C -0.101 4.101 12 C 0.073 3.927 13 O -0.348 6.348 14 C 0.502 3.498 15 O -0.492 6.492 16 C -0.059 4.059 17 C -0.070 4.070 18 C -0.021 4.021 19 C -0.658 4.658 20 S 2.673 3.327 21 O -0.917 6.917 22 O -0.920 6.920 23 F -0.467 7.467 24 C -0.048 4.048 25 C -0.074 4.074 26 H 0.271 0.729 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.588 -15.581 -0.506 32.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.116 4.116 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.162 1.162 7 C -0.654 4.654 8 H 0.107 0.893 9 S 0.023 5.977 10 C -0.234 4.234 11 C -0.140 4.140 12 C -0.002 4.002 13 O -0.264 6.264 14 C 0.345 3.655 15 O -0.380 6.380 16 C -0.060 4.060 17 C -0.089 4.089 18 C -0.041 4.041 19 C -0.745 4.745 20 S 2.761 3.239 21 O -0.916 6.916 22 O -0.919 6.919 23 F -0.466 7.466 24 C -0.067 4.067 25 C -0.093 4.093 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.173 0.827 34 H 0.170 0.830 35 H 0.167 0.833 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 29.518 -14.978 -0.501 33.105 hybrid contribution -1.788 -0.006 -0.059 1.789 sum 27.730 -14.985 -0.560 31.525 Atomic orbital electron populations 1.69931 1.05918 1.27815 1.47884 1.24794 0.94528 0.99039 0.93260 0.86671 0.81711 0.83207 0.79750 1.19305 1.19997 1.16175 1.22112 0.86889 0.97533 1.58848 0.89281 1.84165 1.11930 1.04048 1.97567 1.22947 0.95778 1.00316 1.04323 1.21346 0.96162 0.91936 1.04525 1.23354 0.75242 0.98362 1.03218 1.86497 1.29570 1.27043 1.83288 1.20995 0.89165 0.81697 0.73681 1.90882 1.54833 1.47810 1.44488 1.19610 0.90476 0.94791 1.01172 1.21459 0.96215 0.95723 0.95534 1.20709 0.92063 0.98554 0.92727 1.30774 1.24705 1.01680 1.17301 1.04077 0.73878 0.71261 0.74678 1.93811 1.81046 1.84043 1.32681 1.93789 1.84982 1.49503 1.63595 1.93666 1.86330 1.74892 1.91734 1.20956 0.97579 0.93896 0.94249 1.21684 0.92012 1.00549 0.95075 0.91872 0.90944 0.90901 0.90123 0.90141 0.90596 0.90594 0.82735 0.83000 0.83309 0.82514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 55. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.17 13.97 55.49 0.78 -25.40 16 2 C 0.09 2.64 5.50 -17.43 -0.10 2.55 16 3 Si 0.86 20.94 27.74 -169.99 -4.71 16.23 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.24 -5.62 6.74 56.52 0.38 -5.24 16 7 C -0.51 -14.30 10.04 30.94 0.31 -13.98 16 8 H 0.09 2.68 8.03 -52.48 -0.42 2.26 16 9 S -0.20 -4.76 19.41 -107.50 -2.09 -6.85 16 10 C -0.09 -1.53 5.67 37.16 0.21 -1.32 16 11 C -0.10 -1.40 5.60 -26.73 -0.15 -1.55 16 12 C 0.07 0.89 5.47 37.16 0.20 1.09 16 13 O -0.35 -3.93 9.47 -40.52 -0.38 -4.31 16 14 C 0.50 5.53 7.90 34.61 0.27 5.81 16 15 O -0.49 -6.62 16.14 -19.24 -0.31 -6.93 16 16 C -0.06 -0.49 5.87 -104.98 -0.62 -1.11 16 17 C -0.07 -0.49 9.60 -39.17 -0.38 -0.86 16 18 C -0.02 -0.12 9.57 -39.64 -0.38 -0.50 16 19 C -0.66 -3.44 5.87 -39.49 -0.23 -3.67 16 20 S 2.67 12.92 6.68 -107.50 -0.72 12.21 16 21 O -0.92 -7.02 18.04 -57.17 -1.03 -8.05 16 22 O -0.92 -6.69 17.87 -57.17 -1.02 -7.71 16 23 F -0.47 -2.01 17.41 2.25 0.04 -1.97 16 24 C -0.05 -0.24 9.59 -39.64 -0.38 -0.62 16 25 C -0.07 -0.48 9.62 -39.17 -0.38 -0.86 16 26 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 28 H 0.07 1.30 8.14 -51.91 -0.42 0.88 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.16 0.95 7.65 -52.49 -0.40 0.54 16 34 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 35 H 0.15 0.25 7.74 -52.49 -0.41 -0.16 16 36 H 0.16 0.82 7.61 -52.48 -0.40 0.42 16 LS Contribution 354.23 15.07 5.34 5.34 Total: -1.00 -36.07 354.23 -9.47 -45.53 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -3.74 Total: -3.07 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -1.61 Total: -15.01 kcal Atomic # 7 Polarization: -26.17 SS G_CDS: 0.78 Total: -25.40 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -2.75 Total: -27.00 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.71 Total: 16.23 kcal Atomic # 16 Polarization: 8.16 SS G_CDS: -2.81 Total: 5.36 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.07 -9.47 -45.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490535772.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.339 kcal (2) G-P(sol) polarization free energy of solvation -36.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds