Wall clock time and date at job start Wed Apr 1 2020 05:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 120.00245 * 2 1 4 4 H 1.48497 * 109.46914 * 270.00314 * 3 2 1 5 5 H 1.48501 * 109.46989 * 30.00398 * 3 2 1 6 6 H 1.48502 * 109.46845 * 150.00194 * 3 2 1 7 7 C 1.38803 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99725 * 0.02562 * 7 2 1 9 9 S 1.76196 * 120.00036 * 179.97438 * 7 2 1 10 10 C 1.81006 * 100.00069 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47343 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47377 * 179.97438 * 11 10 9 13 13 O 1.45196 * 109.47183 * 180.02562 * 12 11 10 14 14 C 1.34709 * 116.99971 * 180.02562 * 13 12 11 15 15 O 1.21471 * 120.00215 * 0.02562 * 14 13 12 16 16 C 1.47723 * 120.00179 * 179.97438 * 14 13 12 17 17 C 1.39633 * 120.15316 * 179.97438 * 16 14 13 18 18 C 1.37938 * 119.84852 * 180.30600 * 17 16 14 19 19 C 1.38372 * 120.14963 * 359.44003 * 18 17 16 20 20 S 1.76206 * 119.84830 * 180.28075 * 19 18 17 21 21 O 1.42092 * 106.40444 * 270.28197 * 20 19 18 22 22 O 1.42102 * 106.39725 * 43.20085 * 20 19 18 23 23 F 1.61000 * 107.21649 * 156.73575 * 20 19 18 24 24 C 1.38363 * 120.30454 * 0.56443 * 19 18 17 25 25 C 1.37948 * 120.14806 * 359.71588 * 24 19 18 26 26 H 0.97003 * 120.00029 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47124 * 59.99564 * 10 9 7 28 28 H 1.09004 * 109.46869 * 300.00168 * 10 9 7 29 29 H 1.09003 * 109.46870 * 59.99655 * 11 10 9 30 30 H 1.09003 * 109.46681 * 300.00095 * 11 10 9 31 31 H 1.09004 * 109.46780 * 59.99792 * 12 11 10 32 32 H 1.09004 * 109.47030 * 300.00133 * 12 11 10 33 33 H 1.08002 * 120.07109 * 0.02562 * 17 16 14 34 34 H 1.07998 * 119.92553 * 179.70097 * 18 17 16 35 35 H 1.07997 * 119.93022 * 179.74159 * 24 19 18 36 36 H 1.08004 * 120.07515 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4701 -2.1374 -0.0014 9 16 3.7722 -1.2022 -0.0012 10 6 4.0864 -2.9847 -0.0025 11 6 5.5956 -3.2366 -0.0026 12 6 5.8612 -4.7433 -0.0031 13 8 7.2934 -4.9823 -0.0026 14 6 7.6990 -6.2668 -0.0035 15 8 6.8789 -7.1628 -0.0051 16 6 9.1414 -6.5859 -0.0036 17 6 9.5654 -7.9163 -0.0039 18 6 10.9138 -8.2071 0.0023 19 6 11.8454 -7.1840 -0.0027 20 16 13.5659 -7.5646 -0.0021 21 8 13.9571 -7.6519 1.3611 22 8 13.7424 -8.6256 -0.9308 23 9 14.3360 -6.2908 -0.6156 24 6 11.4323 -5.8635 -0.0023 25 6 10.0870 -5.5585 -0.0028 26 1 -0.4850 0.8401 0.0004 27 1 3.6431 -3.4311 -0.8926 28 1 3.6438 -3.4323 0.8873 29 1 6.0385 -2.7902 0.8877 30 1 6.0385 -2.7888 -0.8923 31 1 5.4182 -5.1900 -0.8933 32 1 5.4182 -5.1906 0.8868 33 1 8.8392 -8.7158 -0.0045 34 1 11.2431 -9.2357 0.0070 35 1 12.1646 -5.0698 -0.0021 36 1 9.7658 -4.5273 -0.0021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490535772.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:54 Heat of formation + Delta-G solvation = -220.128997 kcal Electronic energy + Delta-G solvation = -23817.023955 eV Core-core repulsion = 19625.857486 eV Total energy + Delta-G solvation = -4191.166469 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.038 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.28083 -41.86818 -40.10004 -38.78904 -37.95018 -37.51921 -35.01950 -34.69320 -33.07820 -32.43194 -28.40078 -27.80414 -25.93836 -24.22282 -22.86931 -22.43478 -21.45674 -19.82963 -19.64995 -19.06304 -18.75018 -18.19788 -17.87961 -17.82529 -17.11256 -16.45233 -16.15227 -16.13142 -16.11391 -15.62172 -15.40332 -15.06944 -14.92301 -14.79155 -14.51737 -14.28485 -14.04244 -14.01834 -13.99536 -13.66312 -13.57091 -13.38713 -13.05829 -12.68303 -12.54366 -12.47092 -12.45089 -12.26937 -11.87856 -11.68688 -11.59261 -11.17352 -10.82965 -10.61589 -10.33668 -9.01327 -8.52791 -6.25067 -1.35011 -1.05366 0.03033 1.01941 1.05561 1.31694 1.32907 1.48292 1.70738 1.77887 2.00929 2.23997 2.28532 2.64697 2.85368 3.16729 3.27109 3.46715 3.61080 3.80827 3.89728 3.94165 3.97976 4.08653 4.26262 4.34327 4.39793 4.59520 4.62554 4.69615 4.73383 4.97025 4.98038 5.03978 5.26334 5.42810 5.68338 6.09482 6.41594 6.90716 8.60172 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.027374 B = 0.001592 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.622929 B =17586.807495 C =18416.146070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.037 3.963 3 Si 0.927 3.073 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.226 1.226 7 C -0.527 4.527 8 H 0.051 0.949 9 S -0.204 6.204 10 C -0.076 4.076 11 C -0.087 4.087 12 C 0.078 3.922 13 O -0.344 6.344 14 C 0.504 3.496 15 O -0.524 6.524 16 C -0.081 4.081 17 C -0.078 4.078 18 C -0.026 4.026 19 C -0.655 4.655 20 S 2.713 3.287 21 O -0.943 6.943 22 O -0.942 6.942 23 F -0.459 7.459 24 C -0.047 4.047 25 C -0.076 4.076 26 H 0.277 0.723 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.156 0.844 34 H 0.176 0.824 35 H 0.184 0.816 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.623 -14.936 -0.576 34.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.168 4.168 3 Si 0.748 3.252 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.149 1.149 7 C -0.675 4.675 8 H 0.069 0.931 9 S 0.024 5.976 10 C -0.224 4.224 11 C -0.126 4.126 12 C 0.003 3.997 13 O -0.260 6.260 14 C 0.349 3.651 15 O -0.414 6.414 16 C -0.082 4.082 17 C -0.097 4.097 18 C -0.045 4.045 19 C -0.742 4.742 20 S 2.801 3.199 21 O -0.941 6.941 22 O -0.941 6.941 23 F -0.458 7.458 24 C -0.065 4.065 25 C -0.095 4.095 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.174 0.826 34 H 0.193 0.807 35 H 0.202 0.798 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 32.571 -14.343 -0.570 35.594 hybrid contribution -2.682 -0.338 -0.055 2.704 sum 29.889 -14.681 -0.625 33.306 Atomic orbital electron populations 1.70040 1.07746 1.29168 1.49015 1.25813 0.95437 1.02905 0.92677 0.85698 0.80820 0.78447 0.80281 1.18524 1.18899 1.14880 1.22365 0.90210 0.96304 1.58596 0.93113 1.83780 1.07351 1.08883 1.97595 1.22981 0.98974 0.96191 1.04268 1.21154 0.92833 0.93249 1.05344 1.23121 0.76128 0.97038 1.03393 1.86477 1.28639 1.27527 1.83367 1.21496 0.90186 0.80978 0.72464 1.90866 1.55890 1.48408 1.46227 1.19600 0.89021 0.95977 1.03587 1.21565 0.97005 0.95357 0.95761 1.21038 0.91474 1.00023 0.91992 1.30867 1.24589 1.02033 1.16694 1.02836 0.73138 0.70525 0.73406 1.93779 1.81537 1.84548 1.34275 1.93757 1.85316 1.50875 1.64142 1.93655 1.86153 1.74427 1.91568 1.21411 0.97714 0.94683 0.92728 1.21870 0.92323 1.00652 0.94663 0.91387 0.91062 0.91047 0.89331 0.89289 0.90523 0.90557 0.82637 0.80657 0.79840 0.81365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.05 13.97 21.65 0.30 -55.74 16 2 C 0.04 2.11 5.50 84.86 0.47 2.57 16 3 Si 0.93 42.84 27.74 68.60 1.90 44.74 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.23 -9.90 6.74 99.48 0.67 -9.23 16 7 C -0.53 -30.38 10.04 67.96 0.68 -29.69 16 8 H 0.05 3.19 8.03 -2.91 -0.02 3.17 16 9 S -0.20 -9.31 19.41 -56.49 -1.10 -10.41 16 10 C -0.08 -2.66 5.67 71.98 0.41 -2.25 16 11 C -0.09 -2.25 5.60 30.59 0.17 -2.08 16 12 C 0.08 1.81 5.47 71.98 0.39 2.21 16 13 O -0.34 -7.29 9.47 -56.19 -0.53 -7.83 16 14 C 0.50 10.78 7.90 70.33 0.56 11.34 16 15 O -0.52 -14.11 16.14 19.93 0.32 -13.79 16 16 C -0.08 -1.25 5.87 -20.10 -0.12 -1.37 16 17 C -0.08 -1.01 9.60 22.54 0.22 -0.79 16 18 C -0.03 -0.24 9.57 22.23 0.21 -0.03 16 19 C -0.66 -5.28 5.87 22.33 0.13 -5.15 16 20 S 2.71 20.45 6.68 -56.49 -0.38 20.07 16 21 O -0.94 -12.69 18.04 -128.00 -2.31 -15.00 16 22 O -0.94 -12.00 17.87 -128.00 -2.29 -14.28 16 23 F -0.46 -2.72 17.41 44.97 0.78 -1.94 16 24 C -0.05 -0.32 9.59 22.23 0.21 -0.11 16 25 C -0.08 -0.81 9.62 22.54 0.22 -0.60 16 26 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 27 H 0.07 2.53 8.14 -2.40 -0.02 2.51 16 28 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.16 1.87 7.65 -2.91 -0.02 1.85 16 34 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 35 H 0.18 -0.12 7.74 -2.91 -0.02 -0.14 16 36 H 0.17 1.33 7.61 -2.91 -0.02 1.30 16 Total: -1.00 -78.20 354.23 1.34 -76.86 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: 1.08 Total: 3.27 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 3.55 Total: -25.95 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.30 Total: -55.74 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -4.81 Total: -50.90 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.78 Total: -1.94 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.90 Total: 44.74 kcal Atomic # 16 Polarization: 11.14 SS G_CDS: -1.47 Total: 9.66 kcal Total: -78.20 1.34 -76.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490535772.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.273 kcal (2) G-P(sol) polarization free energy of solvation -78.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds