Wall clock time and date at job start Wed Apr 1 2020 05:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86802 * 120.00201 * 2 1 4 4 H 1.48501 * 109.47001 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46952 * 300.00234 * 3 2 1 6 6 H 1.48496 * 109.47035 * 60.00401 * 3 2 1 7 7 C 1.39946 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99804 * 191.55496 * 7 2 1 9 9 C 1.41393 * 120.00024 * 11.55332 * 7 2 1 10 10 C 1.40741 * 120.23645 * 208.23299 * 9 7 2 11 11 C 1.37609 * 119.76995 * 179.97438 * 10 9 7 12 12 C 1.38631 * 120.26416 * 0.02562 * 11 10 9 13 13 S 1.76200 * 119.75933 * 180.02562 * 12 11 10 14 14 O 1.42100 * 106.39852 * 357.62672 * 13 12 11 15 15 O 1.42095 * 106.40278 * 130.54439 * 13 12 11 16 16 N 1.65599 * 107.21684 * 244.08696 * 13 12 11 17 17 C 1.46503 * 119.99983 * 63.44976 * 16 13 12 18 18 H 1.08998 * 109.47219 * 336.30252 * 17 16 13 19 19 C 1.53002 * 109.47063 * 96.30406 * 17 16 13 20 20 O 1.42898 * 109.47366 * 64.99692 * 19 17 16 21 21 C 1.50693 * 109.46744 * 216.30000 * 17 16 13 22 22 N 1.34779 * 119.99998 * 179.97438 * 21 17 16 23 23 O 1.21286 * 120.00204 * 0.02562 * 21 17 16 24 24 C 1.38735 * 120.48539 * 0.02562 * 12 11 10 25 25 Cl 1.73607 * 119.88506 * 179.97438 * 24 12 11 26 26 C 1.37751 * 120.22142 * 0.23364 * 24 12 11 27 27 H 0.97004 * 119.99436 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.11404 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.86787 * 179.97438 * 11 10 9 30 30 H 0.96996 * 119.99716 * 243.44753 * 16 13 12 31 31 H 1.09000 * 109.46719 * 185.00128 * 19 17 16 32 32 H 1.09001 * 109.47139 * 304.99714 * 19 17 16 33 33 H 0.96702 * 113.99935 * 179.97438 * 20 19 17 34 34 H 0.97000 * 119.99887 * 359.97438 * 22 21 17 35 35 H 0.97002 * 120.00234 * 180.02562 * 22 21 17 36 36 H 1.08003 * 120.13038 * 179.74509 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0715 -1.2215 0.1868 9 6 1.3224 -2.4240 -0.2463 10 6 1.7974 -3.6304 0.3010 11 6 1.1224 -4.8043 0.0561 12 6 -0.0215 -4.8022 -0.7271 13 16 -0.8757 -6.3129 -1.0316 14 8 -0.1217 -7.3355 -0.3952 15 8 -2.2451 -6.0643 -0.7450 16 7 -0.7845 -6.6082 -2.6585 17 6 0.5176 -6.8384 -3.2893 18 1 1.3005 -6.3820 -2.6837 19 6 0.7712 -8.3431 -3.4011 20 8 -0.1868 -8.9231 -4.2888 21 6 0.5245 -6.2243 -4.6654 22 7 1.6262 -6.3118 -5.4369 23 8 -0.4609 -5.6503 -5.0784 24 6 -0.4986 -3.6193 -1.2729 25 17 -1.9322 -3.6348 -2.2519 26 6 0.1644 -2.4336 -1.0450 27 1 -0.4849 0.8401 0.0004 28 1 2.6885 -3.6349 0.9112 29 1 1.4857 -5.7311 0.4750 30 1 -1.5932 -6.6289 -3.1937 31 1 1.7757 -8.5144 -3.7882 32 1 0.6782 -8.8014 -2.4165 33 1 -0.0854 -9.8774 -4.4078 34 1 2.4147 -6.7699 -5.1062 35 1 1.6309 -5.9162 -6.3225 36 1 -0.2060 -1.5142 -1.4740 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516089378.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:03 Heat of formation + Delta-G solvation = -185.431029 kcal Electronic energy + Delta-G solvation = -26897.605462 eV Core-core repulsion = 22725.819865 eV Total energy + Delta-G solvation = -4171.785597 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.76866 -39.60683 -38.23634 -37.78264 -37.29893 -36.79499 -35.78625 -35.44412 -34.62671 -32.06688 -31.22995 -29.72917 -27.76472 -24.96619 -23.51015 -23.08908 -21.50658 -20.58343 -19.55875 -19.23039 -18.82092 -18.32983 -17.93933 -17.33190 -17.23225 -16.82972 -16.21813 -16.05840 -15.84826 -15.45183 -15.24805 -14.98518 -14.71230 -14.46466 -14.30755 -14.00145 -13.69995 -13.33183 -13.14336 -13.06588 -13.01534 -12.92374 -12.79085 -12.74359 -12.28108 -12.07736 -11.97184 -11.82766 -11.49735 -11.31420 -11.21322 -10.78547 -10.58208 -10.41897 -9.85670 -9.48552 -8.88099 -6.74020 -0.40045 0.28551 0.85806 1.28623 1.36779 1.41196 1.54344 1.67912 2.04920 2.10717 2.42001 2.59630 2.86985 3.27862 3.35639 3.62392 3.81233 4.03554 4.18554 4.26088 4.35089 4.67223 4.77571 4.80456 4.89325 4.95589 5.07242 5.22846 5.41990 5.54150 5.81968 5.95651 5.99492 6.00904 6.33617 6.49916 6.58910 6.64972 6.96463 7.39020 8.05063 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.014985 B = 0.004023 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.113918 B = 6958.379778 C = 7325.217466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.028 3.972 3 Si 0.995 3.005 4 H -0.246 1.246 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.449 4.449 8 H 0.105 0.895 9 C 0.118 3.882 10 C -0.241 4.241 11 C 0.007 3.993 12 C -0.806 4.806 13 S 2.721 3.279 14 O -0.981 6.981 15 O -0.995 6.995 16 N -1.090 6.090 17 C 0.127 3.873 18 H 0.136 0.864 19 C 0.066 3.934 20 O -0.584 6.584 21 C 0.522 3.478 22 N -0.831 5.831 23 O -0.571 6.571 24 C 0.066 3.934 25 Cl -0.089 7.089 26 C -0.190 4.190 27 H 0.298 0.702 28 H 0.129 0.871 29 H 0.147 0.853 30 H 0.422 0.578 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.400 0.600 34 H 0.418 0.582 35 H 0.409 0.591 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.732 -10.812 -7.487 15.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.191 4.191 3 Si 0.814 3.186 4 H -0.168 1.168 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.476 4.476 8 H 0.123 0.877 9 C 0.114 3.886 10 C -0.262 4.262 11 C -0.013 4.013 12 C -0.899 4.899 13 S 2.815 3.185 14 O -0.972 6.972 15 O -0.985 6.985 16 N -0.849 5.849 17 C 0.016 3.984 18 H 0.154 0.846 19 C -0.014 4.014 20 O -0.393 6.393 21 C 0.304 3.696 22 N -0.397 5.397 23 O -0.449 6.449 24 C 0.038 3.962 25 Cl -0.060 7.060 26 C -0.211 4.211 27 H 0.109 0.891 28 H 0.147 0.853 29 H 0.164 0.836 30 H 0.258 0.742 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.250 0.750 34 H 0.250 0.750 35 H 0.241 0.759 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.205 -10.281 -6.978 14.363 hybrid contribution 0.217 1.060 -0.561 1.219 sum 7.422 -9.221 -7.539 14.034 Atomic orbital electron populations 1.69854 1.09553 1.31928 1.31054 1.27116 0.95589 1.05566 0.90791 0.84936 0.79714 0.74880 0.79028 1.16827 1.19074 1.18939 1.20343 0.97539 0.90797 1.38916 0.87698 1.18118 0.90030 0.94035 0.86395 1.21398 1.04581 0.92643 1.07537 1.20543 0.90449 0.98733 0.91550 1.29536 1.18153 1.16228 1.25990 1.00592 0.72567 0.73362 0.71998 1.93462 1.73337 1.56092 1.74265 1.93520 1.34997 1.86646 1.83345 1.55168 1.14140 1.87911 1.27663 1.21071 0.86745 0.97290 0.93313 0.84640 1.22733 0.93631 0.89731 0.95334 1.86505 1.56943 1.28656 1.67185 1.20574 0.83292 0.78385 0.87331 1.43528 1.15708 1.60237 1.20183 1.90733 1.35540 1.44306 1.74349 1.20285 0.87406 0.95043 0.93442 1.98337 1.39167 1.98711 1.69823 1.21288 1.00212 0.95405 1.04162 0.89053 0.85332 0.83575 0.74233 0.87867 0.91081 0.74984 0.75017 0.75878 0.86625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.78 10.87 21.83 0.24 -38.54 16 2 C 0.03 1.27 5.24 85.26 0.45 1.72 16 3 Si 1.00 33.35 29.58 68.60 2.03 35.38 16 4 H -0.25 -7.72 7.11 99.48 0.71 -7.02 16 5 H -0.27 -8.79 7.11 99.48 0.71 -8.09 16 6 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 7 C -0.45 -20.98 9.06 23.46 0.21 -20.77 16 8 H 0.11 4.46 7.87 -2.91 -0.02 4.43 16 9 C 0.12 5.78 5.55 -21.30 -0.12 5.66 16 10 C -0.24 -10.41 9.80 22.73 0.22 -10.19 16 11 C 0.01 0.29 9.52 22.21 0.21 0.50 16 12 C -0.81 -34.85 5.67 22.48 0.13 -34.73 16 13 S 2.72 105.23 4.95 -56.49 -0.28 104.95 16 14 O -0.98 -36.74 16.33 -128.00 -2.09 -38.83 16 15 O -0.99 -45.16 16.54 -128.00 -2.12 -47.28 16 16 N -1.09 -35.73 4.88 -172.52 -0.84 -36.57 16 17 C 0.13 3.24 3.00 44.24 0.13 3.38 16 18 H 0.14 3.08 7.77 -2.39 -0.02 3.06 16 19 C 0.07 1.15 6.75 71.98 0.49 1.64 16 20 O -0.58 -11.03 13.09 -148.98 -1.95 -12.97 16 21 C 0.52 14.10 7.01 87.65 0.61 14.72 16 22 N -0.83 -13.40 8.78 -173.53 -1.52 -14.92 16 23 O -0.57 -21.15 16.85 -3.05 -0.05 -21.20 16 24 C 0.07 3.18 6.29 22.27 0.14 3.32 16 25 Cl -0.09 -4.07 26.40 -2.72 -0.07 -4.14 16 26 C -0.19 -9.66 8.44 22.75 0.19 -9.47 16 27 H 0.30 13.00 8.30 -92.71 -0.77 12.23 16 28 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 29 H 0.15 5.00 7.31 -2.91 -0.02 4.98 16 30 H 0.42 14.48 8.25 -96.75 -0.80 13.69 16 31 H 0.10 0.86 7.71 -2.39 -0.02 0.84 16 32 H 0.07 1.34 7.73 -2.39 -0.02 1.32 16 33 H 0.40 3.49 9.12 -74.06 -0.68 2.82 16 34 H 0.42 3.38 8.35 -92.71 -0.77 2.61 16 35 H 0.41 5.93 8.93 -92.71 -0.83 5.10 16 36 H 0.12 6.21 6.23 -2.91 -0.02 6.20 16 Total: -1.00 -73.42 341.51 -5.86 -79.27 By element: Atomic # 1 Polarization: 40.93 SS G_CDS: -1.86 Total: 39.06 kcal Atomic # 6 Polarization: -46.89 SS G_CDS: 2.67 Total: -44.22 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -2.13 Total: -90.03 kcal Atomic # 8 Polarization: -114.07 SS G_CDS: -6.21 Total: -120.28 kcal Atomic # 14 Polarization: 33.35 SS G_CDS: 2.03 Total: 35.38 kcal Atomic # 16 Polarization: 105.23 SS G_CDS: -0.28 Total: 104.95 kcal Atomic # 17 Polarization: -4.07 SS G_CDS: -0.07 Total: -4.14 kcal Total: -73.42 -5.86 -79.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516089378.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.156 kcal (2) G-P(sol) polarization free energy of solvation -73.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds