Wall clock time and date at job start Wed Apr 1 2020 04:33:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53002 * 109.47200 * 2 1
4 4 C 1.52996 * 109.47180 * 240.00199 * 2 1 3
5 5 C 1.50702 * 109.46939 * 119.99938 * 2 1 3
6 6 N 1.30285 * 126.34625 * 233.84279 * 5 2 1
7 7 N 1.28529 * 110.05529 * 179.69867 * 6 5 2
8 8 C 1.31214 * 109.85791 * 0.45093 * 7 6 5
9 9 N 1.38583 * 126.47534 * 179.82657 * 8 7 6
10 10 C 1.46959 * 110.99592 * 321.65802 * 9 8 7
11 11 C 1.53049 * 109.38012 * 183.17721 * 10 9 8
12 12 N 1.46961 * 109.36677 * 301.63675 * 11 10 9
13 13 C 1.46897 * 110.99824 * 183.16749 * 12 11 10
14 14 C 1.50702 * 109.47194 * 66.17736 * 13 12 11
15 15 H 1.07997 * 120.00161 * 359.97438 * 14 13 12
16 16 C 1.37871 * 119.99649 * 179.97438 * 14 13 12
17 17 N 1.31515 * 120.00304 * 359.97438 * 16 14 13
18 18 Si 1.86805 * 119.99883 * 179.97438 * 16 14 13
19 19 H 1.48495 * 109.47319 * 89.99828 * 18 16 14
20 20 H 1.48503 * 109.47103 * 209.99967 * 18 16 14
21 21 H 1.48504 * 109.46802 * 329.99937 * 18 16 14
22 22 C 1.46961 * 110.89775 * 59.28222 * 12 11 10
23 23 C 1.46955 * 111.00159 * 85.46003 * 9 8 7
24 24 N 1.36454 * 107.05489 * 359.56293 * 8 7 6
25 25 C 1.46497 * 127.14041 * 180.23929 * 24 8 7
26 26 C 1.53001 * 109.47253 * 91.06749 * 25 24 8
27 27 C 1.53003 * 117.49850 * 245.01845 * 26 25 24
28 28 C 1.53002 * 117.50167 * 176.35804 * 26 25 24
29 29 H 1.09001 * 109.47062 * 300.00188 * 1 2 3
30 30 H 1.08998 * 109.46941 * 59.99577 * 1 2 3
31 31 H 1.09001 * 109.47174 * 179.97438 * 1 2 3
32 32 H 1.08995 * 109.47121 * 179.97438 * 3 2 1
33 33 H 1.08997 * 109.47176 * 300.00488 * 3 2 1
34 34 H 1.09005 * 109.46840 * 59.99673 * 3 2 1
35 35 H 1.08996 * 109.47074 * 294.02149 * 4 2 1
36 36 H 1.09005 * 109.47372 * 54.01986 * 4 2 1
37 37 H 1.08995 * 109.47179 * 174.02281 * 4 2 1
38 38 H 1.08994 * 109.49130 * 303.15537 * 10 9 8
39 39 H 1.08995 * 109.48717 * 63.20463 * 10 9 8
40 40 H 1.09000 * 109.48564 * 61.57817 * 11 10 9
41 41 H 1.08995 * 109.48795 * 181.64366 * 11 10 9
42 42 H 1.09004 * 109.46736 * 186.17654 * 13 12 11
43 43 H 1.09002 * 109.47324 * 306.17121 * 13 12 11
44 44 H 0.97008 * 119.99953 * 179.97438 * 17 16 14
45 45 H 1.09004 * 109.48433 * 180.72323 * 22 12 11
46 46 H 1.09001 * 109.48662 * 60.66565 * 22 12 11
47 47 H 1.09001 * 109.48454 * 296.78052 * 23 9 8
48 48 H 1.08997 * 109.49039 * 56.82419 * 23 9 8
49 49 H 1.09005 * 109.47399 * 211.06503 * 25 24 8
50 50 H 1.09000 * 109.47052 * 331.06389 * 25 24 8
51 51 H 1.09005 * 115.55173 * 30.68482 * 26 25 24
52 52 H 1.08998 * 117.49765 * 359.97438 * 27 26 25
53 53 H 1.08996 * 117.49800 * 145.01616 * 27 26 25
54 54 H 1.08995 * 117.49830 * 214.97474 * 28 26 25
55 55 H 1.09002 * 117.49428 * 359.97352 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2492
5 6 2.0323 -0.7104 1.2305
6 7 2.8734 -0.2375 2.1059
7 7 3.0792 -1.1042 3.0324
8 6 2.3820 -2.1891 2.7907
9 7 2.3504 -3.3378 3.5653
10 6 3.6822 -3.6459 4.1048
11 6 3.6219 -4.9603 4.8865
12 7 2.6335 -4.8396 5.9673
13 6 2.6001 -6.0572 6.7885
14 6 3.9097 -6.2066 7.5190
15 1 4.6891 -5.4708 7.3862
16 6 4.1129 -7.2825 8.3568
17 7 3.1636 -8.1782 8.5189
18 14 5.7365 -7.4680 9.2619
19 1 5.6531 -6.7787 10.5745
20 1 6.0214 -8.9095 9.4769
21 1 6.8256 -6.8634 8.4535
22 6 1.3017 -4.5314 5.4278
23 6 1.3624 -3.2168 4.6465
24 7 1.6893 -1.9706 1.6355
25 6 0.7693 -2.8945 0.9675
26 6 -0.6534 -2.6550 1.4769
27 6 -1.3228 -3.7855 2.2610
28 6 -1.7798 -3.4674 0.8351
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5139 -0.8899
31 1 -0.3633 -1.0277 -0.0005
32 1 3.1300 1.4425 0.0005
33 1 1.6767 1.9564 -0.8899
34 1 1.6766 1.9563 0.8900
35 1 1.7667 -1.7751 -1.1974
36 1 1.5919 -0.2729 -2.1360
37 1 3.1247 -0.6294 -1.3043
38 1 4.3933 -3.7430 3.2844
39 1 4.0004 -2.8423 4.7687
40 1 3.3303 -5.7689 4.2162
41 1 4.6020 -5.1757 5.3119
42 1 1.7871 -5.9859 7.5110
43 1 2.4410 -6.9239 6.1469
44 1 3.3067 -8.9354 9.1082
45 1 0.5906 -4.4344 6.2482
46 1 0.9836 -5.3350 4.7636
47 1 1.6542 -2.4084 5.3169
48 1 0.3824 -3.0007 4.2211
49 1 0.8030 -2.7260 -0.1089
50 1 1.0647 -3.9212 1.1840
51 1 -0.8791 -1.6318 1.7775
52 1 -0.7497 -4.7001 2.4135
53 1 -1.9890 -3.5061 3.0771
54 1 -2.7466 -2.9789 0.7138
55 1 -1.5073 -4.1723 0.0496
RHF calculation, no. of doubly occupied orbitals= 67
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601901996.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:33:48
Heat of formation + Delta-G solvation = 99.836766 kcal
Electronic energy + Delta-G solvation = -32512.913631 eV
Core-core repulsion = 28586.521943 eV
Total energy + Delta-G solvation = -3926.391687 eV
No. of doubly occupied orbitals = 67
Molecular weight
(most abundant/longest-lived isotopes) = 347.238 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-44.15975 -40.33323 -38.95121 -37.83877 -36.67091 -35.20960 -34.51137 -32.08919
-30.94066 -29.44176 -28.70608 -28.26953 -28.05735 -26.75706 -24.78278 -23.77077
-23.70642 -23.25865 -22.54002 -21.87328 -20.74898 -20.13922 -18.62225 -18.46843
-17.55082 -17.35619 -16.66620 -16.33027 -16.11163 -15.97314 -15.84018 -15.58670
-15.44653 -15.33859 -14.85987 -14.81756 -14.59219 -14.07451 -13.99539 -13.53775
-13.20837 -13.17091 -13.15009 -12.97985 -12.84199 -12.73769 -12.63282 -12.61358
-12.39758 -12.38624 -12.32814 -12.26649 -12.17317 -11.98802 -11.89757 -11.67234
-11.51822 -11.46208 -11.24513 -11.03905 -10.91364 -10.61637 -10.38444 -9.67517
-9.07031 -8.20924 -6.30335 0.65653 1.16093 1.41328 1.42427 1.53417
1.74318 2.40042 2.54324 2.80351 3.11105 3.15851 3.20206 3.51239
3.68248 3.70617 3.78066 3.94541 3.96821 4.00100 4.06003 4.10618
4.11159 4.19526 4.23977 4.29222 4.37059 4.43728 4.49684 4.59222
4.67616 4.71584 4.78896 4.81829 4.83677 4.85354 4.92045 4.95696
4.97971 4.98778 4.99029 5.04548 5.05076 5.15233 5.18387 5.23693
5.24803 5.25807 5.35328 5.44103 5.54182 5.58795 5.65218 6.03418
6.17217 6.28487 6.57898 6.84892 7.39284 7.68662 8.90009
Molecular weight = 347.24amu
Principal moments of inertia in cm(-1)
A = 0.017529 B = 0.002619 C = 0.002373
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1596.950465 B =10688.179080 C =11798.449773
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.022 3.978
3 C -0.128 4.128
4 C -0.142 4.142
5 C 0.200 3.800
6 N -0.324 5.324
7 N -0.353 5.353
8 C 0.348 3.652
9 N -0.453 5.453
10 C 0.087 3.913
11 C 0.077 3.923
12 N -0.549 5.549
13 C 0.212 3.788
14 C -0.524 4.524
15 H 0.061 0.939
16 C 0.005 3.995
17 N -0.932 5.932
18 Si 0.965 3.035
19 H -0.275 1.275
20 H -0.281 1.281
21 H -0.265 1.265
22 C 0.064 3.936
23 C 0.085 3.915
24 N -0.454 5.454
25 C 0.134 3.866
26 C -0.184 4.184
27 C -0.186 4.186
28 C -0.140 4.140
29 H 0.046 0.954
30 H 0.096 0.904
31 H 0.076 0.924
32 H 0.049 0.951
33 H 0.092 0.908
34 H 0.047 0.953
35 H 0.060 0.940
36 H 0.100 0.900
37 H 0.050 0.950
38 H 0.084 0.916
39 H 0.044 0.956
40 H 0.030 0.970
41 H 0.077 0.923
42 H 0.007 0.993
43 H -0.032 1.032
44 H 0.265 0.735
45 H 0.081 0.919
46 H 0.038 0.962
47 H 0.034 0.966
48 H 0.097 0.903
49 H 0.125 0.875
50 H 0.097 0.903
51 H 0.105 0.895
52 H 0.091 0.909
53 H 0.095 0.905
54 H 0.113 0.887
55 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.551 13.954 -25.128 30.976
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.020 3.980
3 C -0.185 4.185
4 C -0.200 4.200
5 C -0.069 4.069
6 N -0.163 5.163
7 N -0.196 5.196
8 C -0.009 4.009
9 N -0.179 5.179
10 C -0.040 4.040
11 C -0.052 4.052
12 N -0.274 5.274
13 C 0.086 3.914
14 C -0.562 4.562
15 H 0.079 0.921
16 C -0.193 4.193
17 N -0.573 5.573
18 Si 0.790 3.210
19 H -0.201 1.201
20 H -0.206 1.206
21 H -0.190 1.190
22 C -0.065 4.065
23 C -0.042 4.042
24 N -0.145 5.145
25 C 0.013 3.987
26 C -0.203 4.203
27 C -0.223 4.223
28 C -0.177 4.177
29 H 0.066 0.934
30 H 0.115 0.885
31 H 0.095 0.905
32 H 0.069 0.931
33 H 0.111 0.889
34 H 0.066 0.934
35 H 0.079 0.921
36 H 0.119 0.881
37 H 0.070 0.930
38 H 0.103 0.897
39 H 0.063 0.937
40 H 0.048 0.952
41 H 0.095 0.905
42 H 0.026 0.974
43 H -0.014 1.014
44 H 0.073 0.927
45 H 0.099 0.901
46 H 0.056 0.944
47 H 0.053 0.947
48 H 0.115 0.885
49 H 0.143 0.857
50 H 0.116 0.884
51 H 0.123 0.877
52 H 0.110 0.890
53 H 0.113 0.887
54 H 0.131 0.869
55 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges -10.642 14.713 -24.326 30.356
hybrid contribution 0.120 -1.467 0.749 1.651
sum -10.522 13.246 -23.577 29.018
Atomic orbital electron populations
1.22227 0.91222 1.03944 1.03465 1.19290 0.97003 0.95042 0.86697
1.21706 1.01204 0.92819 1.02805 1.22004 1.01487 1.00312 0.96195
1.25489 0.97446 0.83610 1.00323 1.73920 1.16656 1.23903 1.01850
1.74591 1.24653 0.99343 1.21048 1.22442 0.96196 0.92550 0.89745
1.58949 1.09729 1.26657 1.22546 1.22031 0.87347 0.96988 0.97668
1.21926 0.97471 0.94683 0.91118 1.62182 1.06004 1.38134 1.21077
1.19326 0.96578 0.84576 0.90888 1.21449 1.00721 1.08003 1.26069
0.92113 1.25843 1.00576 0.95328 0.97583 1.70071 1.34933 1.13374
1.38894 0.85439 0.79449 0.77231 0.78852 1.20060 1.20639 1.18979
1.22085 0.91594 0.95491 0.97341 1.22146 0.94838 0.97184 0.90046
1.46324 1.35060 1.14568 1.18570 1.21857 0.86001 0.92750 0.98113
1.22579 0.92268 0.97785 1.07658 1.23142 1.03828 0.99042 0.96296
1.23075 0.97504 1.01497 0.95643 0.93447 0.88522 0.90508 0.93140
0.88877 0.93406 0.92115 0.88141 0.93048 0.89723 0.93709 0.95213
0.90504 0.97442 1.01436 0.92656 0.90102 0.94395 0.94716 0.88481
0.85746 0.88436 0.87705 0.89011 0.88692 0.86917 0.86959
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.49 7.51 71.98 0.54 -0.95 16
2 C 0.02 0.32 0.77 -52.93 -0.04 0.28 16
3 C -0.13 -1.88 7.99 71.98 0.57 -1.31 16
4 C -0.14 -1.46 8.40 71.98 0.60 -0.86 16
5 C 0.20 4.76 6.35 137.64 0.87 5.64 16
6 N -0.32 -10.55 11.51 -49.54 -0.57 -11.12 16
7 N -0.35 -12.75 11.69 -58.00 -0.68 -13.43 16
8 C 0.35 10.70 6.72 260.11 1.75 12.45 16
9 N -0.45 -14.08 4.73 -705.57 -3.33 -17.41 16
10 C 0.09 3.04 5.30 86.31 0.46 3.49 16
11 C 0.08 3.05 5.43 86.31 0.47 3.52 16
12 N -0.55 -24.07 4.70 -900.27 -4.23 -28.30 16
13 C 0.21 11.27 4.72 85.56 0.40 11.68 16
14 C -0.52 -29.83 8.47 25.60 0.22 -29.61 16
15 H 0.06 3.43 7.13 -2.91 -0.02 3.41 16
16 C 0.00 0.28 5.46 84.65 0.46 0.74 16
17 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16
18 Si 0.97 44.69 29.54 68.60 2.03 46.71 16
19 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16
20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16
21 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16
22 C 0.06 2.25 5.61 86.31 0.48 2.74 16
23 C 0.09 2.64 5.55 86.31 0.48 3.12 16
24 N -0.45 -10.48 2.81 -514.85 -1.45 -11.92 16
25 C 0.13 2.04 5.47 86.38 0.47 2.52 16
26 C -0.18 -2.40 4.23 -10.79 -0.05 -2.44 16
27 C -0.19 -2.64 9.37 30.62 0.29 -2.35 16
28 C -0.14 -1.21 10.25 30.62 0.31 -0.90 16
29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16
30 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16
31 H 0.08 0.66 3.95 -2.39 -0.01 0.65 16
32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16
33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16
34 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16
35 H 0.06 0.57 5.68 -2.39 -0.01 0.55 16
36 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16
37 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16
38 H 0.08 2.74 8.13 -2.39 -0.02 2.72 16
39 H 0.04 1.74 7.99 -2.39 -0.02 1.72 16
40 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16
41 H 0.08 3.31 6.79 -2.39 -0.02 3.29 16
42 H 0.01 0.43 8.03 -2.39 -0.02 0.41 16
43 H -0.03 -1.83 8.12 -2.39 -0.02 -1.85 16
44 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16
45 H 0.08 2.81 8.07 -2.38 -0.02 2.79 16
46 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16
47 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16
48 H 0.10 2.55 7.30 -2.39 -0.02 2.53 16
49 H 0.12 1.23 5.00 -2.38 -0.01 1.21 16
50 H 0.10 1.66 7.88 -2.39 -0.02 1.65 16
51 H 0.10 1.57 6.96 -2.38 -0.02 1.55 16
52 H 0.09 1.53 8.04 -2.39 -0.02 1.51 16
53 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16
54 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16
55 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16
Total: -1.00 -71.97 420.38 1.21 -70.77
By element:
Atomic # 1 Polarization: 11.69 SS G_CDS: 0.86 Total: 12.55 kcal
Atomic # 6 Polarization: -0.54 SS G_CDS: 8.30 Total: 7.76 kcal
Atomic # 7 Polarization: -127.81 SS G_CDS: -9.98 Total: -137.79 kcal
Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal
Total: -71.97 1.21 -70.77 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601901996.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 170.602 kcal
(2) G-P(sol) polarization free energy of solvation -71.973 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.629 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.765 kcal
(6) G-S(sol) free energy of system = (1) + (5) 99.837 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds