Wall clock time and date at job start Wed Apr 1 2020 04:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47200 * 2 1 4 4 C 1.52996 * 109.47180 * 240.00199 * 2 1 3 5 5 C 1.50702 * 109.46939 * 119.99938 * 2 1 3 6 6 N 1.30285 * 126.34625 * 233.84279 * 5 2 1 7 7 N 1.28529 * 110.05529 * 179.69867 * 6 5 2 8 8 C 1.31214 * 109.85791 * 0.45093 * 7 6 5 9 9 N 1.38583 * 126.47534 * 179.82657 * 8 7 6 10 10 C 1.46959 * 110.99592 * 321.65802 * 9 8 7 11 11 C 1.53049 * 109.38012 * 183.17721 * 10 9 8 12 12 N 1.46961 * 109.36677 * 301.63675 * 11 10 9 13 13 C 1.46897 * 110.99824 * 183.16749 * 12 11 10 14 14 C 1.50702 * 109.47194 * 66.17736 * 13 12 11 15 15 H 1.07997 * 120.00161 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99649 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00304 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99883 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47319 * 89.99828 * 18 16 14 20 20 H 1.48503 * 109.47103 * 209.99967 * 18 16 14 21 21 H 1.48504 * 109.46802 * 329.99937 * 18 16 14 22 22 C 1.46961 * 110.89775 * 59.28222 * 12 11 10 23 23 C 1.46955 * 111.00159 * 85.46003 * 9 8 7 24 24 N 1.36454 * 107.05489 * 359.56293 * 8 7 6 25 25 C 1.46497 * 127.14041 * 180.23929 * 24 8 7 26 26 C 1.53001 * 109.47253 * 91.06749 * 25 24 8 27 27 C 1.53003 * 117.49850 * 245.01845 * 26 25 24 28 28 C 1.53002 * 117.50167 * 176.35804 * 26 25 24 29 29 H 1.09001 * 109.47062 * 300.00188 * 1 2 3 30 30 H 1.08998 * 109.46941 * 59.99577 * 1 2 3 31 31 H 1.09001 * 109.47174 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47121 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47176 * 300.00488 * 3 2 1 34 34 H 1.09005 * 109.46840 * 59.99673 * 3 2 1 35 35 H 1.08996 * 109.47074 * 294.02149 * 4 2 1 36 36 H 1.09005 * 109.47372 * 54.01986 * 4 2 1 37 37 H 1.08995 * 109.47179 * 174.02281 * 4 2 1 38 38 H 1.08994 * 109.49130 * 303.15537 * 10 9 8 39 39 H 1.08995 * 109.48717 * 63.20463 * 10 9 8 40 40 H 1.09000 * 109.48564 * 61.57817 * 11 10 9 41 41 H 1.08995 * 109.48795 * 181.64366 * 11 10 9 42 42 H 1.09004 * 109.46736 * 186.17654 * 13 12 11 43 43 H 1.09002 * 109.47324 * 306.17121 * 13 12 11 44 44 H 0.97008 * 119.99953 * 179.97438 * 17 16 14 45 45 H 1.09004 * 109.48433 * 180.72323 * 22 12 11 46 46 H 1.09001 * 109.48662 * 60.66565 * 22 12 11 47 47 H 1.09001 * 109.48454 * 296.78052 * 23 9 8 48 48 H 1.08997 * 109.49039 * 56.82419 * 23 9 8 49 49 H 1.09005 * 109.47399 * 211.06503 * 25 24 8 50 50 H 1.09000 * 109.47052 * 331.06389 * 25 24 8 51 51 H 1.09005 * 115.55173 * 30.68482 * 26 25 24 52 52 H 1.08998 * 117.49765 * 359.97438 * 27 26 25 53 53 H 1.08996 * 117.49800 * 145.01616 * 27 26 25 54 54 H 1.08995 * 117.49830 * 214.97474 * 28 26 25 55 55 H 1.09002 * 117.49428 * 359.97352 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 2.8734 -0.2375 2.1059 7 7 3.0792 -1.1042 3.0324 8 6 2.3820 -2.1891 2.7907 9 7 2.3504 -3.3378 3.5653 10 6 3.6822 -3.6459 4.1048 11 6 3.6219 -4.9603 4.8865 12 7 2.6335 -4.8396 5.9673 13 6 2.6001 -6.0572 6.7885 14 6 3.9097 -6.2066 7.5190 15 1 4.6891 -5.4708 7.3862 16 6 4.1129 -7.2825 8.3568 17 7 3.1636 -8.1782 8.5189 18 14 5.7365 -7.4680 9.2619 19 1 5.6531 -6.7787 10.5745 20 1 6.0214 -8.9095 9.4769 21 1 6.8256 -6.8634 8.4535 22 6 1.3017 -4.5314 5.4278 23 6 1.3624 -3.2168 4.6465 24 7 1.6893 -1.9706 1.6355 25 6 0.7693 -2.8945 0.9675 26 6 -0.6534 -2.6550 1.4769 27 6 -1.3228 -3.7855 2.2610 28 6 -1.7798 -3.4674 0.8351 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.7667 -1.7751 -1.1974 36 1 1.5919 -0.2729 -2.1360 37 1 3.1247 -0.6294 -1.3043 38 1 4.3933 -3.7430 3.2844 39 1 4.0004 -2.8423 4.7687 40 1 3.3303 -5.7689 4.2162 41 1 4.6020 -5.1757 5.3119 42 1 1.7871 -5.9859 7.5110 43 1 2.4410 -6.9239 6.1469 44 1 3.3067 -8.9354 9.1082 45 1 0.5906 -4.4344 6.2482 46 1 0.9836 -5.3350 4.7636 47 1 1.6542 -2.4084 5.3169 48 1 0.3824 -3.0007 4.2211 49 1 0.8030 -2.7260 -0.1089 50 1 1.0647 -3.9212 1.1840 51 1 -0.8791 -1.6318 1.7775 52 1 -0.7497 -4.7001 2.4135 53 1 -1.9890 -3.5061 3.0771 54 1 -2.7466 -2.9789 0.7138 55 1 -1.5073 -4.1723 0.0496 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601901996.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:48 Heat of formation + Delta-G solvation = 99.836766 kcal Electronic energy + Delta-G solvation = -32512.913631 eV Core-core repulsion = 28586.521943 eV Total energy + Delta-G solvation = -3926.391687 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.15975 -40.33323 -38.95121 -37.83877 -36.67091 -35.20960 -34.51137 -32.08919 -30.94066 -29.44176 -28.70608 -28.26953 -28.05735 -26.75706 -24.78278 -23.77077 -23.70642 -23.25865 -22.54002 -21.87328 -20.74898 -20.13922 -18.62225 -18.46843 -17.55082 -17.35619 -16.66620 -16.33027 -16.11163 -15.97314 -15.84018 -15.58670 -15.44653 -15.33859 -14.85987 -14.81756 -14.59219 -14.07451 -13.99539 -13.53775 -13.20837 -13.17091 -13.15009 -12.97985 -12.84199 -12.73769 -12.63282 -12.61358 -12.39758 -12.38624 -12.32814 -12.26649 -12.17317 -11.98802 -11.89757 -11.67234 -11.51822 -11.46208 -11.24513 -11.03905 -10.91364 -10.61637 -10.38444 -9.67517 -9.07031 -8.20924 -6.30335 0.65653 1.16093 1.41328 1.42427 1.53417 1.74318 2.40042 2.54324 2.80351 3.11105 3.15851 3.20206 3.51239 3.68248 3.70617 3.78066 3.94541 3.96821 4.00100 4.06003 4.10618 4.11159 4.19526 4.23977 4.29222 4.37059 4.43728 4.49684 4.59222 4.67616 4.71584 4.78896 4.81829 4.83677 4.85354 4.92045 4.95696 4.97971 4.98778 4.99029 5.04548 5.05076 5.15233 5.18387 5.23693 5.24803 5.25807 5.35328 5.44103 5.54182 5.58795 5.65218 6.03418 6.17217 6.28487 6.57898 6.84892 7.39284 7.68662 8.90009 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.002619 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.950465 B =10688.179080 C =11798.449773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.022 3.978 3 C -0.128 4.128 4 C -0.142 4.142 5 C 0.200 3.800 6 N -0.324 5.324 7 N -0.353 5.353 8 C 0.348 3.652 9 N -0.453 5.453 10 C 0.087 3.913 11 C 0.077 3.923 12 N -0.549 5.549 13 C 0.212 3.788 14 C -0.524 4.524 15 H 0.061 0.939 16 C 0.005 3.995 17 N -0.932 5.932 18 Si 0.965 3.035 19 H -0.275 1.275 20 H -0.281 1.281 21 H -0.265 1.265 22 C 0.064 3.936 23 C 0.085 3.915 24 N -0.454 5.454 25 C 0.134 3.866 26 C -0.184 4.184 27 C -0.186 4.186 28 C -0.140 4.140 29 H 0.046 0.954 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.030 0.970 41 H 0.077 0.923 42 H 0.007 0.993 43 H -0.032 1.032 44 H 0.265 0.735 45 H 0.081 0.919 46 H 0.038 0.962 47 H 0.034 0.966 48 H 0.097 0.903 49 H 0.125 0.875 50 H 0.097 0.903 51 H 0.105 0.895 52 H 0.091 0.909 53 H 0.095 0.905 54 H 0.113 0.887 55 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.551 13.954 -25.128 30.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.020 3.980 3 C -0.185 4.185 4 C -0.200 4.200 5 C -0.069 4.069 6 N -0.163 5.163 7 N -0.196 5.196 8 C -0.009 4.009 9 N -0.179 5.179 10 C -0.040 4.040 11 C -0.052 4.052 12 N -0.274 5.274 13 C 0.086 3.914 14 C -0.562 4.562 15 H 0.079 0.921 16 C -0.193 4.193 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.201 1.201 20 H -0.206 1.206 21 H -0.190 1.190 22 C -0.065 4.065 23 C -0.042 4.042 24 N -0.145 5.145 25 C 0.013 3.987 26 C -0.203 4.203 27 C -0.223 4.223 28 C -0.177 4.177 29 H 0.066 0.934 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.095 0.905 42 H 0.026 0.974 43 H -0.014 1.014 44 H 0.073 0.927 45 H 0.099 0.901 46 H 0.056 0.944 47 H 0.053 0.947 48 H 0.115 0.885 49 H 0.143 0.857 50 H 0.116 0.884 51 H 0.123 0.877 52 H 0.110 0.890 53 H 0.113 0.887 54 H 0.131 0.869 55 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.642 14.713 -24.326 30.356 hybrid contribution 0.120 -1.467 0.749 1.651 sum -10.522 13.246 -23.577 29.018 Atomic orbital electron populations 1.22227 0.91222 1.03944 1.03465 1.19290 0.97003 0.95042 0.86697 1.21706 1.01204 0.92819 1.02805 1.22004 1.01487 1.00312 0.96195 1.25489 0.97446 0.83610 1.00323 1.73920 1.16656 1.23903 1.01850 1.74591 1.24653 0.99343 1.21048 1.22442 0.96196 0.92550 0.89745 1.58949 1.09729 1.26657 1.22546 1.22031 0.87347 0.96988 0.97668 1.21926 0.97471 0.94683 0.91118 1.62182 1.06004 1.38134 1.21077 1.19326 0.96578 0.84576 0.90888 1.21449 1.00721 1.08003 1.26069 0.92113 1.25843 1.00576 0.95328 0.97583 1.70071 1.34933 1.13374 1.38894 0.85439 0.79449 0.77231 0.78852 1.20060 1.20639 1.18979 1.22085 0.91594 0.95491 0.97341 1.22146 0.94838 0.97184 0.90046 1.46324 1.35060 1.14568 1.18570 1.21857 0.86001 0.92750 0.98113 1.22579 0.92268 0.97785 1.07658 1.23142 1.03828 0.99042 0.96296 1.23075 0.97504 1.01497 0.95643 0.93447 0.88522 0.90508 0.93140 0.88877 0.93406 0.92115 0.88141 0.93048 0.89723 0.93709 0.95213 0.90504 0.97442 1.01436 0.92656 0.90102 0.94395 0.94716 0.88481 0.85746 0.88436 0.87705 0.89011 0.88692 0.86917 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 7.51 71.98 0.54 -0.95 16 2 C 0.02 0.32 0.77 -52.93 -0.04 0.28 16 3 C -0.13 -1.88 7.99 71.98 0.57 -1.31 16 4 C -0.14 -1.46 8.40 71.98 0.60 -0.86 16 5 C 0.20 4.76 6.35 137.64 0.87 5.64 16 6 N -0.32 -10.55 11.51 -49.54 -0.57 -11.12 16 7 N -0.35 -12.75 11.69 -58.00 -0.68 -13.43 16 8 C 0.35 10.70 6.72 260.11 1.75 12.45 16 9 N -0.45 -14.08 4.73 -705.57 -3.33 -17.41 16 10 C 0.09 3.04 5.30 86.31 0.46 3.49 16 11 C 0.08 3.05 5.43 86.31 0.47 3.52 16 12 N -0.55 -24.07 4.70 -900.27 -4.23 -28.30 16 13 C 0.21 11.27 4.72 85.56 0.40 11.68 16 14 C -0.52 -29.83 8.47 25.60 0.22 -29.61 16 15 H 0.06 3.43 7.13 -2.91 -0.02 3.41 16 16 C 0.00 0.28 5.46 84.65 0.46 0.74 16 17 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 18 Si 0.97 44.69 29.54 68.60 2.03 46.71 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 22 C 0.06 2.25 5.61 86.31 0.48 2.74 16 23 C 0.09 2.64 5.55 86.31 0.48 3.12 16 24 N -0.45 -10.48 2.81 -514.85 -1.45 -11.92 16 25 C 0.13 2.04 5.47 86.38 0.47 2.52 16 26 C -0.18 -2.40 4.23 -10.79 -0.05 -2.44 16 27 C -0.19 -2.64 9.37 30.62 0.29 -2.35 16 28 C -0.14 -1.21 10.25 30.62 0.31 -0.90 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.08 0.66 3.95 -2.39 -0.01 0.65 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.06 0.57 5.68 -2.39 -0.01 0.55 16 36 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 37 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.08 2.74 8.13 -2.39 -0.02 2.72 16 39 H 0.04 1.74 7.99 -2.39 -0.02 1.72 16 40 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 3.31 6.79 -2.39 -0.02 3.29 16 42 H 0.01 0.43 8.03 -2.39 -0.02 0.41 16 43 H -0.03 -1.83 8.12 -2.39 -0.02 -1.85 16 44 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 45 H 0.08 2.81 8.07 -2.38 -0.02 2.79 16 46 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 48 H 0.10 2.55 7.30 -2.39 -0.02 2.53 16 49 H 0.12 1.23 5.00 -2.38 -0.01 1.21 16 50 H 0.10 1.66 7.88 -2.39 -0.02 1.65 16 51 H 0.10 1.57 6.96 -2.38 -0.02 1.55 16 52 H 0.09 1.53 8.04 -2.39 -0.02 1.51 16 53 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 54 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 55 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -71.97 420.38 1.21 -70.77 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.86 Total: 12.55 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 8.30 Total: 7.76 kcal Atomic # 7 Polarization: -127.81 SS G_CDS: -9.98 Total: -137.79 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -71.97 1.21 -70.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601901996.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.602 kcal (2) G-P(sol) polarization free energy of solvation -71.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds