Wall clock time and date at job start Wed Apr 1 2020 04:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46838 * 2 1 4 4 C 1.52999 * 109.47121 * 119.99773 * 2 1 3 5 5 C 1.50689 * 109.47172 * 174.43556 * 4 2 1 6 6 N 1.30296 * 126.35086 * 275.84505 * 5 4 2 7 7 N 1.28522 * 110.05689 * 179.69013 * 6 5 4 8 8 C 1.31216 * 109.86160 * 0.45529 * 7 6 5 9 9 N 1.38576 * 126.47403 * 179.81867 * 8 7 6 10 10 C 1.46950 * 111.00180 * 343.82554 * 9 8 7 11 11 C 1.53059 * 109.36813 * 183.18870 * 10 9 8 12 12 N 1.46957 * 109.35883 * 301.60428 * 11 10 9 13 13 C 1.46904 * 110.99441 * 183.18704 * 12 11 10 14 14 C 1.50700 * 109.47081 * 169.99647 * 13 12 11 15 15 H 1.07999 * 119.99859 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00096 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99670 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00020 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46874 * 90.00528 * 18 16 14 20 20 H 1.48491 * 109.47138 * 210.00310 * 18 16 14 21 21 H 1.48496 * 109.46893 * 330.00643 * 18 16 14 22 22 C 1.46959 * 110.88482 * 59.31798 * 12 11 10 23 23 C 1.46951 * 111.00026 * 107.63102 * 9 8 7 24 24 N 1.36454 * 107.05346 * 359.56005 * 8 7 6 25 25 C 1.46500 * 127.14112 * 180.27872 * 24 8 7 26 26 C 1.52998 * 109.47454 * 271.71747 * 25 24 8 27 27 C 1.52997 * 117.49718 * 243.57192 * 26 25 24 28 28 C 1.52995 * 117.49861 * 174.90781 * 26 25 24 29 29 H 1.08991 * 109.47576 * 299.99692 * 1 2 3 30 30 H 1.08999 * 109.47286 * 60.00704 * 1 2 3 31 31 H 1.09003 * 109.47118 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47215 * 240.00087 * 2 1 3 33 33 H 1.09005 * 109.47299 * 62.43096 * 3 2 1 34 34 H 1.09001 * 109.47340 * 182.43290 * 3 2 1 35 35 H 1.09002 * 109.47278 * 302.43275 * 3 2 1 36 36 H 1.08999 * 109.47114 * 54.43214 * 4 2 1 37 37 H 1.09000 * 109.47403 * 294.43923 * 4 2 1 38 38 H 1.09002 * 109.49127 * 63.22051 * 10 9 8 39 39 H 1.09006 * 109.51152 * 303.16884 * 10 9 8 40 40 H 1.08995 * 109.49113 * 181.63289 * 11 10 9 41 41 H 1.09005 * 109.48543 * 61.56410 * 11 10 9 42 42 H 1.08999 * 109.47188 * 289.99590 * 13 12 11 43 43 H 1.08998 * 109.47408 * 49.99660 * 13 12 11 44 44 H 0.97007 * 119.99421 * 179.97438 * 17 16 14 45 45 H 1.09003 * 109.48431 * 60.64767 * 22 12 11 46 46 H 1.08996 * 109.48585 * 180.70776 * 22 12 11 47 47 H 1.08997 * 109.48609 * 296.77599 * 23 9 8 48 48 H 1.09002 * 109.49469 * 56.82119 * 23 9 8 49 49 H 1.09008 * 109.46853 * 31.71700 * 25 24 8 50 50 H 1.08995 * 109.46795 * 151.71305 * 25 24 8 51 51 H 1.09003 * 115.54895 * 29.23768 * 26 25 24 52 52 H 1.09001 * 117.50069 * 359.97438 * 27 26 25 53 53 H 1.09000 * 117.49534 * 145.01965 * 27 26 25 54 54 H 1.09001 * 117.49853 * 214.97433 * 28 26 25 55 55 H 1.08996 * 117.50181 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5406 -0.8416 1.1823 6 7 4.2141 -1.7696 0.5635 7 7 5.4754 -1.5669 0.7042 8 6 5.6760 -0.4953 1.4343 9 7 6.9032 0.0336 1.8013 10 6 7.9797 -0.9467 1.6029 11 6 9.3029 -0.3536 2.0929 12 7 9.5825 0.8876 1.3574 13 6 10.8834 1.4483 1.7464 14 6 11.2474 2.5704 0.8086 15 1 10.5791 2.8403 0.0044 16 6 12.4333 3.2531 0.9780 17 7 13.2469 2.9247 1.9577 18 14 12.8848 4.6436 -0.1849 19 1 12.3584 5.9256 0.3485 20 1 14.3624 4.7274 -0.3060 21 1 12.2925 4.3830 -1.5214 22 6 8.5058 1.8680 1.5558 23 6 7.1828 1.2748 1.0659 24 7 4.4480 0.0033 1.7591 25 6 4.1612 1.1963 2.5594 26 6 4.0934 0.8137 4.0393 27 6 2.7546 0.9994 4.7563 28 6 3.9207 1.9454 5.0543 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.7126 1.9436 0.9110 34 1 3.1291 1.4429 -0.0436 35 1 1.6414 1.9688 -0.8674 36 1 1.5976 -1.7160 1.3006 37 1 1.7603 -0.1531 2.1365 38 1 8.0602 -1.1891 0.5432 39 1 7.7561 -1.8522 2.1670 40 1 10.1078 -1.0679 1.9201 41 1 9.2315 -0.1365 3.1587 42 1 10.8240 1.8311 2.7652 43 1 11.6447 0.6700 1.6945 44 1 14.0814 3.4048 2.0766 45 1 8.4255 2.1103 2.6156 46 1 8.7298 2.7732 0.9915 47 1 7.2541 1.0577 0.0001 48 1 6.3777 1.9891 1.2384 49 1 4.9513 1.9324 2.4103 50 1 3.2062 1.6206 2.2497 51 1 4.7083 -0.0368 4.3336 52 1 1.9223 1.3945 4.1739 53 1 2.4890 0.2712 5.5226 54 1 4.4215 1.8391 6.0166 55 1 3.8557 2.9625 4.6679 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601904017.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:52 Heat of formation + Delta-G solvation = 92.577137 kcal Electronic energy + Delta-G solvation = -32104.749562 eV Core-core repulsion = 28178.043073 eV Total energy + Delta-G solvation = -3926.706488 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.10354 -40.35182 -38.77238 -37.54946 -36.76529 -35.24655 -34.54629 -32.10886 -31.74527 -29.92253 -28.67971 -28.00034 -27.65904 -26.74221 -24.74037 -23.80467 -23.30742 -22.67664 -22.50481 -21.62403 -20.95401 -20.49522 -18.61560 -18.48976 -17.65783 -17.38845 -16.72733 -16.42810 -16.19896 -15.97316 -15.83346 -15.49354 -15.45748 -15.29870 -15.13810 -14.91680 -14.60821 -14.25396 -14.00625 -13.61940 -13.50663 -13.20488 -13.13567 -12.92967 -12.86624 -12.73534 -12.62834 -12.61736 -12.39194 -12.36719 -12.27388 -12.22130 -12.07052 -11.87096 -11.69969 -11.68040 -11.61015 -11.47168 -11.27020 -11.04741 -10.93013 -10.64328 -10.59491 -9.42044 -9.09432 -8.20646 -6.30741 0.69446 1.17099 1.41294 1.43217 1.54487 1.75496 2.40039 2.54844 2.79896 3.10868 3.18225 3.30131 3.58315 3.63864 3.66051 3.80594 3.93235 3.93852 3.96344 3.97782 4.06963 4.16696 4.20328 4.22870 4.23300 4.30441 4.40485 4.51331 4.53616 4.65568 4.70684 4.75669 4.78226 4.79041 4.86822 4.88528 4.90174 4.97362 4.98723 4.99458 5.01570 5.06133 5.15698 5.18204 5.22907 5.23923 5.27019 5.40022 5.48649 5.52004 5.59362 5.64011 6.02322 6.15700 6.27460 6.54800 6.84413 7.38987 7.71532 8.90464 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.013632 B = 0.002545 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.484802 B =10997.805335 C =11183.182891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 C -0.151 4.151 4 C -0.023 4.023 5 C 0.198 3.802 6 N -0.328 5.328 7 N -0.357 5.357 8 C 0.354 3.646 9 N -0.452 5.452 10 C 0.092 3.908 11 C 0.060 3.940 12 N -0.548 5.548 13 C 0.211 3.789 14 C -0.523 4.523 15 H 0.064 0.936 16 C 0.003 3.997 17 N -0.933 5.933 18 Si 0.968 3.032 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.266 1.266 22 C 0.075 3.925 23 C 0.076 3.924 24 N -0.462 5.462 25 C 0.136 3.864 26 C -0.187 4.187 27 C -0.159 4.159 28 C -0.163 4.163 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.027 0.973 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.048 0.952 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.032 0.968 42 H -0.033 1.033 43 H 0.005 0.995 44 H 0.264 0.736 45 H 0.031 0.969 46 H 0.083 0.917 47 H 0.040 0.960 48 H 0.100 0.900 49 H 0.096 0.904 50 H 0.126 0.874 51 H 0.082 0.918 52 H 0.120 0.880 53 H 0.098 0.902 54 H 0.095 0.905 55 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.010 -1.001 3.879 30.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 C -0.208 4.208 4 C -0.063 4.063 5 C -0.071 4.071 6 N -0.167 5.167 7 N -0.201 5.201 8 C -0.004 4.004 9 N -0.177 5.177 10 C -0.035 4.035 11 C -0.069 4.069 12 N -0.273 5.273 13 C 0.085 3.915 14 C -0.561 4.561 15 H 0.082 0.918 16 C -0.195 4.195 17 N -0.574 5.574 18 Si 0.793 3.207 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.191 1.191 22 C -0.054 4.054 23 C -0.051 4.051 24 N -0.155 5.155 25 C 0.015 3.985 26 C -0.206 4.206 27 C -0.196 4.196 28 C -0.200 4.200 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.066 0.934 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.050 0.950 42 H -0.015 1.015 43 H 0.023 0.977 44 H 0.073 0.927 45 H 0.049 0.951 46 H 0.101 0.899 47 H 0.058 0.942 48 H 0.118 0.882 49 H 0.115 0.885 50 H 0.143 0.857 51 H 0.101 0.899 52 H 0.138 0.862 53 H 0.117 0.883 54 H 0.113 0.887 55 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -29.515 -2.172 3.134 29.760 hybrid contribution 1.220 1.380 0.507 1.910 sum -28.295 -0.792 3.641 28.539 Atomic orbital electron populations 1.21779 0.92278 1.02698 1.02992 1.21078 0.97478 0.95830 0.96412 1.21975 0.99457 0.96066 1.03326 1.20381 0.80972 1.04224 1.00708 1.25375 0.96244 0.88683 0.96771 1.73877 0.97957 1.23077 1.21787 1.74561 1.10238 1.17434 1.17862 1.22575 0.86468 0.94365 0.96993 1.58953 0.97835 1.06753 1.54167 1.21932 0.87657 0.93084 1.00834 1.22141 0.96116 0.92976 0.95621 1.62213 1.03281 1.05059 1.56732 1.19343 0.85408 0.93717 0.93049 1.21427 1.04678 1.16127 1.13892 0.91826 1.25891 0.96153 1.00233 0.97229 1.70086 1.11815 1.42785 1.32683 0.85399 0.77212 0.78973 0.79144 1.19534 1.20944 1.19079 1.21939 0.88871 0.95516 0.99054 1.22291 0.97951 0.89350 0.95530 1.46289 1.04358 1.24036 1.40830 1.21815 1.04832 0.83576 0.88294 1.22378 1.03529 1.02645 0.92075 1.23239 0.91226 1.02335 1.02772 1.23050 1.02158 0.95598 0.99241 0.90832 0.92082 0.91979 0.92653 0.90340 0.95356 0.91744 0.87732 0.87311 0.93377 0.89342 0.90033 0.94951 1.01526 0.97653 0.92676 0.95060 0.89922 0.94167 0.88241 0.88543 0.85659 0.89931 0.86201 0.88332 0.88676 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.19 71.98 0.66 -0.36 16 2 C -0.09 -1.07 2.90 -10.79 -0.03 -1.10 16 3 C -0.15 -1.73 7.93 71.98 0.57 -1.16 16 4 C -0.02 -0.31 4.96 29.84 0.15 -0.16 16 5 C 0.20 4.59 6.43 137.63 0.88 5.47 16 6 N -0.33 -10.54 12.18 -49.54 -0.60 -11.14 16 7 N -0.36 -12.66 11.39 -58.01 -0.66 -13.32 16 8 C 0.35 10.80 6.95 260.11 1.81 12.61 16 9 N -0.45 -14.10 4.73 -705.55 -3.33 -17.43 16 10 C 0.09 3.11 5.04 86.31 0.44 3.54 16 11 C 0.06 2.25 5.61 86.31 0.48 2.73 16 12 N -0.55 -23.88 4.70 -900.26 -4.23 -28.11 16 13 C 0.21 11.18 4.72 85.56 0.40 11.58 16 14 C -0.52 -29.24 8.47 25.60 0.22 -29.02 16 15 H 0.06 3.48 7.13 -2.91 -0.02 3.45 16 16 C 0.00 0.18 5.46 84.66 0.46 0.64 16 17 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 18 Si 0.97 43.75 29.54 68.60 2.03 45.78 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 C 0.07 2.81 5.43 86.31 0.47 3.27 16 23 C 0.08 2.34 5.44 86.31 0.47 2.81 16 24 N -0.46 -10.56 2.57 -514.86 -1.32 -11.89 16 25 C 0.14 2.11 5.73 86.38 0.50 2.60 16 26 C -0.19 -2.83 6.01 -10.80 -0.06 -2.89 16 27 C -0.16 -1.46 10.18 30.62 0.31 -1.14 16 28 C -0.16 -1.88 10.25 30.62 0.31 -1.56 16 29 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 0.52 7.21 -2.38 -0.02 0.51 16 34 H 0.03 0.46 6.87 -2.39 -0.02 0.44 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.11 0.86 7.59 -2.39 -0.02 0.84 16 38 H 0.05 1.77 8.05 -2.39 -0.02 1.75 16 39 H 0.09 2.82 8.13 -2.38 -0.02 2.80 16 40 H 0.08 3.01 8.07 -2.39 -0.02 2.99 16 41 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 42 H -0.03 -1.88 8.12 -2.39 -0.02 -1.90 16 43 H 0.01 0.31 8.03 -2.39 -0.02 0.29 16 44 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 45 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.08 3.28 6.79 -2.39 -0.02 3.26 16 47 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 48 H 0.10 2.47 6.07 -2.39 -0.01 2.45 16 49 H 0.10 1.60 6.04 -2.38 -0.01 1.59 16 50 H 0.13 1.18 5.18 -2.39 -0.01 1.17 16 51 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 52 H 0.12 0.55 8.03 -2.39 -0.02 0.53 16 53 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 54 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 55 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -71.80 425.89 1.05 -70.75 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.85 Total: 12.95 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 8.04 Total: 7.87 kcal Atomic # 7 Polarization: -127.48 SS G_CDS: -9.87 Total: -137.35 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -71.80 1.05 -70.75 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601904017.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.325 kcal (2) G-P(sol) polarization free energy of solvation -71.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds