Wall clock time and date at job start Wed Apr 1 2020 04:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47187 * 2 1 4 4 H 1.09001 * 109.47110 * 54.99691 * 3 2 1 5 5 C 1.53000 * 109.47243 * 295.00414 * 3 2 1 6 6 C 1.50701 * 109.47530 * 175.00257 * 3 2 1 7 7 N 1.30291 * 126.34698 * 60.01775 * 6 3 2 8 8 N 1.28532 * 110.05375 * 179.97438 * 7 6 3 9 9 C 1.31210 * 109.85633 * 0.02562 * 8 7 6 10 10 N 1.38586 * 126.47137 * 179.97438 * 9 8 7 11 11 C 1.46959 * 110.99902 * 36.04729 * 10 9 8 12 12 C 1.53047 * 109.38065 * 176.82357 * 11 10 9 13 13 N 1.46955 * 109.36525 * 58.39472 * 12 11 10 14 14 C 1.46903 * 111.00048 * 176.80889 * 13 12 11 15 15 C 1.50693 * 109.47225 * 189.99819 * 14 13 12 16 16 H 1.08000 * 120.00132 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00264 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99796 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46943 * 90.00104 * 19 17 15 21 21 H 1.48502 * 109.47131 * 209.99646 * 19 17 15 22 22 H 1.48492 * 109.46878 * 329.99801 * 19 17 15 23 23 C 1.46957 * 110.87919 * 300.67762 * 13 12 11 24 24 C 1.46960 * 111.01701 * 272.24257 * 10 9 8 25 25 N 1.36451 * 107.05799 * 0.22434 * 9 8 7 26 26 C 1.46504 * 127.13533 * 179.77098 * 25 9 8 27 27 C 1.52999 * 109.46687 * 93.75057 * 26 25 9 28 28 C 1.52998 * 117.49923 * 243.74378 * 27 26 25 29 29 C 1.53000 * 117.49505 * 175.08497 * 27 26 25 30 30 H 1.08996 * 109.46783 * 60.00121 * 1 2 3 31 31 H 1.09002 * 109.46692 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47123 * 299.99409 * 1 2 3 33 33 H 1.09004 * 109.46984 * 240.00216 * 2 1 3 34 34 H 1.09003 * 109.47213 * 120.00423 * 2 1 3 35 35 H 1.09003 * 109.47133 * 59.99684 * 5 3 2 36 36 H 1.08996 * 109.47255 * 180.02562 * 5 3 2 37 37 H 1.09004 * 109.47139 * 299.99992 * 5 3 2 38 38 H 1.09001 * 109.48802 * 56.84980 * 11 10 9 39 39 H 1.09002 * 109.48866 * 296.80434 * 11 10 9 40 40 H 1.09007 * 109.48578 * 178.36019 * 12 11 10 41 41 H 1.08994 * 109.49228 * 298.42163 * 12 11 10 42 42 H 1.09002 * 109.47344 * 309.99952 * 14 13 12 43 43 H 1.09006 * 109.46961 * 69.99803 * 14 13 12 44 44 H 0.97007 * 119.99869 * 179.97438 * 18 17 15 45 45 H 1.09000 * 109.48592 * 179.29210 * 23 13 12 46 46 H 1.08998 * 109.48484 * 299.35324 * 23 13 12 47 47 H 1.08994 * 109.47592 * 63.19286 * 24 10 9 48 48 H 1.09001 * 109.50485 * 303.14947 * 24 10 9 49 49 H 1.09004 * 109.46877 * 213.75051 * 26 25 9 50 50 H 1.08999 * 109.47515 * 333.75113 * 26 25 9 51 51 H 1.08993 * 115.55288 * 29.41903 * 27 26 25 52 52 H 1.09005 * 117.50001 * 0.02562 * 28 27 26 53 53 H 1.08994 * 117.50057 * 145.02691 * 28 27 26 54 54 H 1.09007 * 117.49778 * 214.97918 * 29 27 26 55 55 H 1.09005 * 117.50116 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5420 1.4444 0.1238 7 7 4.3856 0.8947 -0.7031 8 7 5.5897 1.0859 -0.2962 9 6 5.5786 1.7730 0.8216 10 7 6.6850 2.1694 1.5560 11 6 7.8057 2.5197 0.6722 12 6 8.9782 3.0263 1.5153 13 7 9.3735 1.9862 2.4752 14 6 10.5467 2.4062 3.2532 15 6 11.0704 1.2352 4.0440 16 1 10.5811 0.2749 3.9753 17 6 12.1744 1.3898 4.8554 18 7 12.7706 2.5590 4.9388 19 14 12.8241 -0.0620 5.8352 20 1 13.8307 -0.7947 5.0258 21 1 13.4567 0.4284 7.0861 22 1 11.7015 -0.9735 6.1726 23 6 8.2530 1.6362 3.3593 24 6 7.0805 1.1295 2.5162 25 7 4.2716 2.0186 1.1275 26 6 3.7572 2.7490 2.2886 27 6 3.5457 4.2174 1.9145 28 6 4.3930 5.2615 2.6444 29 6 2.9017 5.1275 2.9623 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 0.5489 2.1252 -1.3968 36 1 1.9990 3.1540 -1.3075 37 1 2.0698 1.5875 -2.1492 38 1 7.4920 3.3004 -0.0208 39 1 8.1155 1.6381 0.1109 40 1 9.8206 3.2592 0.8639 41 1 8.6768 3.9239 2.0553 42 1 11.3226 2.7637 2.5763 43 1 10.2623 3.2074 3.9355 44 1 13.5471 2.6679 5.5100 45 1 8.5667 0.8556 4.0523 46 1 7.9433 2.5180 3.9202 47 1 7.3819 0.2320 1.9762 48 1 6.2382 0.8964 3.1676 49 1 2.8081 2.3131 2.6007 50 1 4.4742 2.6821 3.1068 51 1 3.3057 4.4061 0.8682 52 1 5.1015 4.9022 3.3909 53 1 4.7102 6.1373 2.0784 54 1 2.2383 5.9153 2.6052 55 1 2.6283 4.6801 3.9179 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601906467.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:46 Heat of formation + Delta-G solvation = 92.556177 kcal Electronic energy + Delta-G solvation = -31922.489995 eV Core-core repulsion = 27995.782598 eV Total energy + Delta-G solvation = -3926.707397 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.11101 -40.32146 -38.70682 -37.56856 -36.65298 -35.28439 -34.53403 -32.08229 -31.59743 -30.27822 -29.03146 -28.62165 -26.80705 -25.92189 -24.68227 -23.83466 -23.35736 -23.06289 -22.61552 -21.66674 -21.02601 -20.29302 -18.63498 -18.49034 -17.60535 -17.35594 -16.67102 -16.57181 -16.03557 -15.95572 -15.80469 -15.78668 -15.48569 -15.32729 -15.11096 -14.81336 -14.46884 -14.11883 -14.00789 -13.60799 -13.50292 -13.18340 -13.08638 -12.95550 -12.86649 -12.71737 -12.61745 -12.60689 -12.39960 -12.35477 -12.30322 -12.19060 -12.14127 -11.91596 -11.68313 -11.61724 -11.59137 -11.44721 -11.26229 -11.04049 -10.97788 -10.61664 -10.39467 -9.62914 -9.07490 -8.20610 -6.30440 0.64639 1.14967 1.41420 1.43073 1.53561 1.73554 2.39999 2.54374 2.82261 3.11220 3.19672 3.23144 3.50464 3.68554 3.70523 3.80335 3.97756 4.00377 4.01494 4.05278 4.11882 4.16873 4.22680 4.24158 4.27736 4.34572 4.42258 4.51068 4.52283 4.60365 4.67021 4.70237 4.75832 4.79940 4.85349 4.91115 4.94992 4.96302 4.99264 5.02606 5.09684 5.15456 5.18625 5.19706 5.20819 5.23526 5.24239 5.41968 5.50838 5.53322 5.59446 5.64485 6.03075 6.16603 6.28964 6.56599 6.84795 7.39181 7.67994 8.90383 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.015039 B = 0.002487 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.346976 B =11254.382933 C =11913.558381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C 0.004 3.996 4 H 0.112 0.888 5 C -0.138 4.138 6 C 0.195 3.805 7 N -0.321 5.321 8 N -0.352 5.352 9 C 0.350 3.650 10 N -0.453 5.453 11 C 0.091 3.909 12 C 0.062 3.938 13 N -0.548 5.548 14 C 0.211 3.789 15 C -0.523 4.523 16 H 0.062 0.938 17 C 0.003 3.997 18 N -0.933 5.933 19 Si 0.967 3.033 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.263 1.263 23 C 0.077 3.923 24 C 0.080 3.920 25 N -0.459 5.459 26 C 0.138 3.862 27 C -0.176 4.176 28 C -0.184 4.184 29 C -0.142 4.142 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.080 0.920 41 H 0.034 0.966 42 H 0.005 0.995 43 H -0.032 1.032 44 H 0.264 0.736 45 H 0.079 0.921 46 H 0.032 0.968 47 H 0.038 0.962 48 H 0.094 0.906 49 H 0.125 0.875 50 H 0.098 0.902 51 H 0.099 0.901 52 H 0.090 0.910 53 H 0.090 0.910 54 H 0.111 0.889 55 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.041 2.926 -5.425 30.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.016 4.016 4 H 0.130 0.870 5 C -0.195 4.195 6 C -0.074 4.074 7 N -0.160 5.160 8 N -0.195 5.195 9 C -0.007 4.007 10 N -0.179 5.179 11 C -0.037 4.037 12 C -0.067 4.067 13 N -0.273 5.273 14 C 0.085 3.915 15 C -0.561 4.561 16 H 0.080 0.920 17 C -0.195 4.195 18 N -0.573 5.573 19 Si 0.792 3.208 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.187 1.187 23 C -0.052 4.052 24 C -0.047 4.047 25 N -0.151 5.151 26 C 0.017 3.983 27 C -0.195 4.195 28 C -0.221 4.221 29 C -0.179 4.179 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.052 0.948 42 H 0.023 0.977 43 H -0.014 1.014 44 H 0.073 0.927 45 H 0.097 0.903 46 H 0.050 0.950 47 H 0.056 0.944 48 H 0.112 0.888 49 H 0.143 0.857 50 H 0.116 0.884 51 H 0.117 0.883 52 H 0.108 0.892 53 H 0.108 0.892 54 H 0.129 0.871 55 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -29.342 2.261 -6.504 30.139 hybrid contribution 1.029 0.355 1.473 1.831 sum -28.314 2.616 -5.032 28.876 Atomic orbital electron populations 1.21798 0.92920 1.02598 1.03095 1.21498 0.97656 0.93738 1.02017 1.19869 0.80876 0.99203 1.01687 0.87032 1.21817 1.03143 0.99572 0.95017 1.25502 0.98206 0.97236 0.86432 1.73879 0.95357 1.21628 1.25103 1.74591 1.15504 1.17324 1.12101 1.22442 0.85487 0.98562 0.94256 1.58981 1.03313 1.39278 1.16314 1.21962 0.87923 1.00468 0.93306 1.22108 0.96469 0.92971 0.95111 1.62193 1.05968 1.40490 1.18682 1.19335 0.87239 0.94205 0.90681 1.21431 1.12740 0.96892 1.25054 0.91951 1.25877 0.96838 0.98716 0.98050 1.70081 1.21914 1.24981 1.40340 0.85412 0.78615 0.78992 0.77773 1.20186 1.20708 1.18750 1.21919 0.89092 1.00053 0.94128 1.22211 0.97655 0.91419 0.93446 1.46444 1.04962 1.42076 1.21646 1.21723 1.01801 0.90073 0.84718 1.22409 1.07919 0.90543 0.98613 1.23052 0.95092 1.00637 1.03302 1.23084 0.94790 1.00882 0.99189 0.91272 0.92203 0.91319 0.92393 0.92794 0.88541 0.93073 0.93095 0.89587 0.93539 0.90206 0.94761 0.97656 1.01443 0.92676 0.90270 0.94989 0.94357 0.88767 0.85704 0.88402 0.88318 0.89184 0.89185 0.87059 0.86886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 71.98 0.70 -0.47 16 2 C -0.11 -1.50 5.38 30.59 0.16 -1.34 16 3 C 0.00 0.06 2.76 -11.54 -0.03 0.03 16 4 H 0.11 0.99 7.04 -2.39 -0.02 0.97 16 5 C -0.14 -1.75 8.93 71.98 0.64 -1.11 16 6 C 0.19 4.54 6.58 137.64 0.91 5.45 16 7 N -0.32 -10.17 12.18 -49.54 -0.60 -10.78 16 8 N -0.35 -12.44 11.64 -58.01 -0.68 -13.11 16 9 C 0.35 10.61 6.75 260.11 1.76 12.37 16 10 N -0.45 -13.94 4.72 -705.54 -3.33 -17.27 16 11 C 0.09 3.01 5.28 86.31 0.46 3.46 16 12 C 0.06 2.29 5.61 86.31 0.48 2.78 16 13 N -0.55 -23.95 4.70 -900.30 -4.23 -28.18 16 14 C 0.21 11.22 4.72 85.55 0.40 11.62 16 15 C -0.52 -29.42 8.47 25.60 0.22 -29.21 16 16 H 0.06 3.45 7.13 -2.91 -0.02 3.43 16 17 C 0.00 0.19 5.46 84.65 0.46 0.65 16 18 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 19 Si 0.97 44.12 29.54 68.60 2.03 46.14 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 23 C 0.08 2.91 5.43 86.31 0.47 3.38 16 24 C 0.08 2.55 5.55 86.31 0.48 3.03 16 25 N -0.46 -10.58 2.81 -514.85 -1.45 -12.03 16 26 C 0.14 2.12 6.09 86.38 0.53 2.65 16 27 C -0.18 -2.50 6.01 -10.79 -0.06 -2.57 16 28 C -0.18 -2.93 10.18 30.62 0.31 -2.62 16 29 C -0.14 -1.40 10.25 30.62 0.31 -1.09 16 30 H 0.07 0.44 6.56 -2.39 -0.02 0.42 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.10 0.70 6.57 -2.39 -0.02 0.68 16 36 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.05 0.85 8.14 -2.38 -0.02 0.84 16 38 H 0.09 2.63 8.13 -2.39 -0.02 2.61 16 39 H 0.05 1.71 7.98 -2.39 -0.02 1.69 16 40 H 0.08 2.92 8.07 -2.38 -0.02 2.90 16 41 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.01 0.31 8.03 -2.39 -0.02 0.29 16 43 H -0.03 -1.83 8.12 -2.38 -0.02 -1.85 16 44 H 0.26 14.88 8.31 -92.70 -0.77 14.10 16 45 H 0.08 3.23 6.79 -2.39 -0.02 3.21 16 46 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.09 2.52 8.13 -2.39 -0.02 2.50 16 49 H 0.13 1.14 7.41 -2.38 -0.02 1.12 16 50 H 0.10 1.65 7.87 -2.39 -0.02 1.63 16 51 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16 52 H 0.09 1.66 8.03 -2.38 -0.02 1.64 16 53 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 54 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 55 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -71.04 433.33 1.05 -69.98 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.84 Total: 13.71 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 8.19 Total: 7.03 kcal Atomic # 7 Polarization: -126.87 SS G_CDS: -10.00 Total: -136.87 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -71.04 1.05 -69.98 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601906467.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.540 kcal (2) G-P(sol) polarization free energy of solvation -71.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds