Wall clock time and date at job start Wed Apr 1 2020 04:38:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52997 * 109.47187 * 2 1
4 4 H 1.09001 * 109.47110 * 54.99691 * 3 2 1
5 5 C 1.53000 * 109.47243 * 295.00414 * 3 2 1
6 6 C 1.50701 * 109.47530 * 175.00257 * 3 2 1
7 7 N 1.30291 * 126.34698 * 60.01775 * 6 3 2
8 8 N 1.28532 * 110.05375 * 179.97438 * 7 6 3
9 9 C 1.31210 * 109.85633 * 0.02562 * 8 7 6
10 10 N 1.38586 * 126.47137 * 179.97438 * 9 8 7
11 11 C 1.46959 * 110.99902 * 36.04729 * 10 9 8
12 12 C 1.53047 * 109.38065 * 176.82357 * 11 10 9
13 13 N 1.46955 * 109.36525 * 58.39472 * 12 11 10
14 14 C 1.46903 * 111.00048 * 176.80889 * 13 12 11
15 15 C 1.50693 * 109.47225 * 189.99819 * 14 13 12
16 16 H 1.08000 * 120.00132 * 0.02562 * 15 14 13
17 17 C 1.37876 * 120.00264 * 180.02562 * 15 14 13
18 18 N 1.31516 * 119.99796 * 359.97438 * 17 15 14
19 19 Si 1.86804 * 120.00172 * 180.02562 * 17 15 14
20 20 H 1.48500 * 109.46943 * 90.00104 * 19 17 15
21 21 H 1.48502 * 109.47131 * 209.99646 * 19 17 15
22 22 H 1.48492 * 109.46878 * 329.99801 * 19 17 15
23 23 C 1.46957 * 110.87919 * 300.67762 * 13 12 11
24 24 C 1.46960 * 111.01701 * 272.24257 * 10 9 8
25 25 N 1.36451 * 107.05799 * 0.22434 * 9 8 7
26 26 C 1.46504 * 127.13533 * 179.77098 * 25 9 8
27 27 C 1.52999 * 109.46687 * 93.75057 * 26 25 9
28 28 C 1.52998 * 117.49923 * 243.74378 * 27 26 25
29 29 C 1.53000 * 117.49505 * 175.08497 * 27 26 25
30 30 H 1.08996 * 109.46783 * 60.00121 * 1 2 3
31 31 H 1.09002 * 109.46692 * 179.97438 * 1 2 3
32 32 H 1.08997 * 109.47123 * 299.99409 * 1 2 3
33 33 H 1.09004 * 109.46984 * 240.00216 * 2 1 3
34 34 H 1.09003 * 109.47213 * 120.00423 * 2 1 3
35 35 H 1.09003 * 109.47133 * 59.99684 * 5 3 2
36 36 H 1.08996 * 109.47255 * 180.02562 * 5 3 2
37 37 H 1.09004 * 109.47139 * 299.99992 * 5 3 2
38 38 H 1.09001 * 109.48802 * 56.84980 * 11 10 9
39 39 H 1.09002 * 109.48866 * 296.80434 * 11 10 9
40 40 H 1.09007 * 109.48578 * 178.36019 * 12 11 10
41 41 H 1.08994 * 109.49228 * 298.42163 * 12 11 10
42 42 H 1.09002 * 109.47344 * 309.99952 * 14 13 12
43 43 H 1.09006 * 109.46961 * 69.99803 * 14 13 12
44 44 H 0.97007 * 119.99869 * 179.97438 * 18 17 15
45 45 H 1.09000 * 109.48592 * 179.29210 * 23 13 12
46 46 H 1.08998 * 109.48484 * 299.35324 * 23 13 12
47 47 H 1.08994 * 109.47592 * 63.19286 * 24 10 9
48 48 H 1.09001 * 109.50485 * 303.14947 * 24 10 9
49 49 H 1.09004 * 109.46877 * 213.75051 * 26 25 9
50 50 H 1.08999 * 109.47515 * 333.75113 * 26 25 9
51 51 H 1.08993 * 115.55288 * 29.41903 * 27 26 25
52 52 H 1.09005 * 117.50001 * 0.02562 * 28 27 26
53 53 H 1.08994 * 117.50057 * 145.02691 * 28 27 26
54 54 H 1.09007 * 117.49778 * 214.97918 * 29 27 26
55 55 H 1.09005 * 117.50116 * 359.97438 * 29 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.6054 1.9815 0.8418
5 6 1.6352 2.1266 -1.3073
6 6 3.5420 1.4444 0.1238
7 7 4.3856 0.8947 -0.7031
8 7 5.5897 1.0859 -0.2962
9 6 5.5786 1.7730 0.8216
10 7 6.6850 2.1694 1.5560
11 6 7.8057 2.5197 0.6722
12 6 8.9782 3.0263 1.5153
13 7 9.3735 1.9862 2.4752
14 6 10.5467 2.4062 3.2532
15 6 11.0704 1.2352 4.0440
16 1 10.5811 0.2749 3.9753
17 6 12.1744 1.3898 4.8554
18 7 12.7706 2.5590 4.9388
19 14 12.8241 -0.0620 5.8352
20 1 13.8307 -0.7947 5.0258
21 1 13.4567 0.4284 7.0861
22 1 11.7015 -0.9735 6.1726
23 6 8.2530 1.6362 3.3593
24 6 7.0805 1.1295 2.5162
25 7 4.2716 2.0186 1.1275
26 6 3.7572 2.7490 2.2886
27 6 3.5457 4.2174 1.9145
28 6 4.3930 5.2615 2.6444
29 6 2.9017 5.1275 2.9623
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5137 0.8900
33 1 1.8934 -0.5138 -0.8900
34 1 1.8934 -0.5139 0.8900
35 1 0.5489 2.1252 -1.3968
36 1 1.9990 3.1540 -1.3075
37 1 2.0698 1.5875 -2.1492
38 1 7.4920 3.3004 -0.0208
39 1 8.1155 1.6381 0.1109
40 1 9.8206 3.2592 0.8639
41 1 8.6768 3.9239 2.0553
42 1 11.3226 2.7637 2.5763
43 1 10.2623 3.2074 3.9355
44 1 13.5471 2.6679 5.5100
45 1 8.5667 0.8556 4.0523
46 1 7.9433 2.5180 3.9202
47 1 7.3819 0.2320 1.9762
48 1 6.2382 0.8964 3.1676
49 1 2.8081 2.3131 2.6007
50 1 4.4742 2.6821 3.1068
51 1 3.3057 4.4061 0.8682
52 1 5.1015 4.9022 3.3909
53 1 4.7102 6.1373 2.0784
54 1 2.2383 5.9153 2.6052
55 1 2.6283 4.6801 3.9179
RHF calculation, no. of doubly occupied orbitals= 67
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601906467.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:38:46
Heat of formation + Delta-G solvation = 92.556177 kcal
Electronic energy + Delta-G solvation = -31922.489995 eV
Core-core repulsion = 27995.782598 eV
Total energy + Delta-G solvation = -3926.707397 eV
No. of doubly occupied orbitals = 67
Molecular weight
(most abundant/longest-lived isotopes) = 347.238 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-44.11101 -40.32146 -38.70682 -37.56856 -36.65298 -35.28439 -34.53403 -32.08229
-31.59743 -30.27822 -29.03146 -28.62165 -26.80705 -25.92189 -24.68227 -23.83466
-23.35736 -23.06289 -22.61552 -21.66674 -21.02601 -20.29302 -18.63498 -18.49034
-17.60535 -17.35594 -16.67102 -16.57181 -16.03557 -15.95572 -15.80469 -15.78668
-15.48569 -15.32729 -15.11096 -14.81336 -14.46884 -14.11883 -14.00789 -13.60799
-13.50292 -13.18340 -13.08638 -12.95550 -12.86649 -12.71737 -12.61745 -12.60689
-12.39960 -12.35477 -12.30322 -12.19060 -12.14127 -11.91596 -11.68313 -11.61724
-11.59137 -11.44721 -11.26229 -11.04049 -10.97788 -10.61664 -10.39467 -9.62914
-9.07490 -8.20610 -6.30440 0.64639 1.14967 1.41420 1.43073 1.53561
1.73554 2.39999 2.54374 2.82261 3.11220 3.19672 3.23144 3.50464
3.68554 3.70523 3.80335 3.97756 4.00377 4.01494 4.05278 4.11882
4.16873 4.22680 4.24158 4.27736 4.34572 4.42258 4.51068 4.52283
4.60365 4.67021 4.70237 4.75832 4.79940 4.85349 4.91115 4.94992
4.96302 4.99264 5.02606 5.09684 5.15456 5.18625 5.19706 5.20819
5.23526 5.24239 5.41968 5.50838 5.53322 5.59446 5.64485 6.03075
6.16603 6.28964 6.56599 6.84795 7.39181 7.67994 8.90383
Molecular weight = 347.24amu
Principal moments of inertia in cm(-1)
A = 0.015039 B = 0.002487 C = 0.002350
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1861.346976 B =11254.382933 C =11913.558381
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.110 4.110
3 C 0.004 3.996
4 H 0.112 0.888
5 C -0.138 4.138
6 C 0.195 3.805
7 N -0.321 5.321
8 N -0.352 5.352
9 C 0.350 3.650
10 N -0.453 5.453
11 C 0.091 3.909
12 C 0.062 3.938
13 N -0.548 5.548
14 C 0.211 3.789
15 C -0.523 4.523
16 H 0.062 0.938
17 C 0.003 3.997
18 N -0.933 5.933
19 Si 0.967 3.033
20 H -0.276 1.276
21 H -0.282 1.282
22 H -0.263 1.263
23 C 0.077 3.923
24 C 0.080 3.920
25 N -0.459 5.459
26 C 0.138 3.862
27 C -0.176 4.176
28 C -0.184 4.184
29 C -0.142 4.142
30 H 0.068 0.932
31 H 0.059 0.941
32 H 0.068 0.932
33 H 0.057 0.943
34 H 0.053 0.947
35 H 0.096 0.904
36 H 0.050 0.950
37 H 0.050 0.950
38 H 0.086 0.914
39 H 0.046 0.954
40 H 0.080 0.920
41 H 0.034 0.966
42 H 0.005 0.995
43 H -0.032 1.032
44 H 0.264 0.736
45 H 0.079 0.921
46 H 0.032 0.968
47 H 0.038 0.962
48 H 0.094 0.906
49 H 0.125 0.875
50 H 0.098 0.902
51 H 0.099 0.901
52 H 0.090 0.910
53 H 0.090 0.910
54 H 0.111 0.889
55 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -30.041 2.926 -5.425 30.667
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.149 4.149
3 C -0.016 4.016
4 H 0.130 0.870
5 C -0.195 4.195
6 C -0.074 4.074
7 N -0.160 5.160
8 N -0.195 5.195
9 C -0.007 4.007
10 N -0.179 5.179
11 C -0.037 4.037
12 C -0.067 4.067
13 N -0.273 5.273
14 C 0.085 3.915
15 C -0.561 4.561
16 H 0.080 0.920
17 C -0.195 4.195
18 N -0.573 5.573
19 Si 0.792 3.208
20 H -0.202 1.202
21 H -0.207 1.207
22 H -0.187 1.187
23 C -0.052 4.052
24 C -0.047 4.047
25 N -0.151 5.151
26 C 0.017 3.983
27 C -0.195 4.195
28 C -0.221 4.221
29 C -0.179 4.179
30 H 0.087 0.913
31 H 0.078 0.922
32 H 0.087 0.913
33 H 0.076 0.924
34 H 0.072 0.928
35 H 0.115 0.885
36 H 0.069 0.931
37 H 0.069 0.931
38 H 0.104 0.896
39 H 0.065 0.935
40 H 0.098 0.902
41 H 0.052 0.948
42 H 0.023 0.977
43 H -0.014 1.014
44 H 0.073 0.927
45 H 0.097 0.903
46 H 0.050 0.950
47 H 0.056 0.944
48 H 0.112 0.888
49 H 0.143 0.857
50 H 0.116 0.884
51 H 0.117 0.883
52 H 0.108 0.892
53 H 0.108 0.892
54 H 0.129 0.871
55 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges -29.342 2.261 -6.504 30.139
hybrid contribution 1.029 0.355 1.473 1.831
sum -28.314 2.616 -5.032 28.876
Atomic orbital electron populations
1.21798 0.92920 1.02598 1.03095 1.21498 0.97656 0.93738 1.02017
1.19869 0.80876 0.99203 1.01687 0.87032 1.21817 1.03143 0.99572
0.95017 1.25502 0.98206 0.97236 0.86432 1.73879 0.95357 1.21628
1.25103 1.74591 1.15504 1.17324 1.12101 1.22442 0.85487 0.98562
0.94256 1.58981 1.03313 1.39278 1.16314 1.21962 0.87923 1.00468
0.93306 1.22108 0.96469 0.92971 0.95111 1.62193 1.05968 1.40490
1.18682 1.19335 0.87239 0.94205 0.90681 1.21431 1.12740 0.96892
1.25054 0.91951 1.25877 0.96838 0.98716 0.98050 1.70081 1.21914
1.24981 1.40340 0.85412 0.78615 0.78992 0.77773 1.20186 1.20708
1.18750 1.21919 0.89092 1.00053 0.94128 1.22211 0.97655 0.91419
0.93446 1.46444 1.04962 1.42076 1.21646 1.21723 1.01801 0.90073
0.84718 1.22409 1.07919 0.90543 0.98613 1.23052 0.95092 1.00637
1.03302 1.23084 0.94790 1.00882 0.99189 0.91272 0.92203 0.91319
0.92393 0.92794 0.88541 0.93073 0.93095 0.89587 0.93539 0.90206
0.94761 0.97656 1.01443 0.92676 0.90270 0.94989 0.94357 0.88767
0.85704 0.88402 0.88318 0.89184 0.89185 0.87059 0.86886
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.16 9.67 71.98 0.70 -0.47 16
2 C -0.11 -1.50 5.38 30.59 0.16 -1.34 16
3 C 0.00 0.06 2.76 -11.54 -0.03 0.03 16
4 H 0.11 0.99 7.04 -2.39 -0.02 0.97 16
5 C -0.14 -1.75 8.93 71.98 0.64 -1.11 16
6 C 0.19 4.54 6.58 137.64 0.91 5.45 16
7 N -0.32 -10.17 12.18 -49.54 -0.60 -10.78 16
8 N -0.35 -12.44 11.64 -58.01 -0.68 -13.11 16
9 C 0.35 10.61 6.75 260.11 1.76 12.37 16
10 N -0.45 -13.94 4.72 -705.54 -3.33 -17.27 16
11 C 0.09 3.01 5.28 86.31 0.46 3.46 16
12 C 0.06 2.29 5.61 86.31 0.48 2.78 16
13 N -0.55 -23.95 4.70 -900.30 -4.23 -28.18 16
14 C 0.21 11.22 4.72 85.55 0.40 11.62 16
15 C -0.52 -29.42 8.47 25.60 0.22 -29.21 16
16 H 0.06 3.45 7.13 -2.91 -0.02 3.43 16
17 C 0.00 0.19 5.46 84.65 0.46 0.65 16
18 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16
19 Si 0.97 44.12 29.54 68.60 2.03 46.14 16
20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16
21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16
22 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16
23 C 0.08 2.91 5.43 86.31 0.47 3.38 16
24 C 0.08 2.55 5.55 86.31 0.48 3.03 16
25 N -0.46 -10.58 2.81 -514.85 -1.45 -12.03 16
26 C 0.14 2.12 6.09 86.38 0.53 2.65 16
27 C -0.18 -2.50 6.01 -10.79 -0.06 -2.57 16
28 C -0.18 -2.93 10.18 30.62 0.31 -2.62 16
29 C -0.14 -1.40 10.25 30.62 0.31 -1.09 16
30 H 0.07 0.44 6.56 -2.39 -0.02 0.42 16
31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16
32 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16
33 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16
34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16
35 H 0.10 0.70 6.57 -2.39 -0.02 0.68 16
36 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16
37 H 0.05 0.85 8.14 -2.38 -0.02 0.84 16
38 H 0.09 2.63 8.13 -2.39 -0.02 2.61 16
39 H 0.05 1.71 7.98 -2.39 -0.02 1.69 16
40 H 0.08 2.92 8.07 -2.38 -0.02 2.90 16
41 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16
42 H 0.01 0.31 8.03 -2.39 -0.02 0.29 16
43 H -0.03 -1.83 8.12 -2.38 -0.02 -1.85 16
44 H 0.26 14.88 8.31 -92.70 -0.77 14.10 16
45 H 0.08 3.23 6.79 -2.39 -0.02 3.21 16
46 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16
47 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16
48 H 0.09 2.52 8.13 -2.39 -0.02 2.50 16
49 H 0.13 1.14 7.41 -2.38 -0.02 1.12 16
50 H 0.10 1.65 7.87 -2.39 -0.02 1.63 16
51 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16
52 H 0.09 1.66 8.03 -2.38 -0.02 1.64 16
53 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16
54 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16
55 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16
Total: -1.00 -71.04 433.33 1.05 -69.98
By element:
Atomic # 1 Polarization: 12.87 SS G_CDS: 0.84 Total: 13.71 kcal
Atomic # 6 Polarization: -1.15 SS G_CDS: 8.19 Total: 7.03 kcal
Atomic # 7 Polarization: -126.87 SS G_CDS: -10.00 Total: -136.87 kcal
Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal
Total: -71.04 1.05 -69.98 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601906467.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 162.540 kcal
(2) G-P(sol) polarization free energy of solvation -71.036 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.504 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.984 kcal
(6) G-S(sol) free energy of system = (1) + (5) 92.556 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds