Wall clock time and date at job start Wed Apr 1 2020 04:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47059 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47439 * 180.02562 * 16 15 14 18 18 N 1.46897 * 109.47333 * 179.97438 * 17 16 15 19 19 C 1.46962 * 111.00144 * 293.79934 * 18 17 16 20 20 C 1.53048 * 109.36323 * 176.80835 * 19 18 17 21 21 N 1.46954 * 109.36251 * 58.40484 * 20 19 18 22 22 C 1.38406 * 111.00184 * 176.80875 * 21 20 19 23 23 N 1.32495 * 119.22114 * 123.52436 * 22 21 20 24 24 C 1.32273 * 120.74376 * 179.71684 * 23 22 21 25 25 C 1.38610 * 119.19667 * 0.55131 * 24 23 22 26 26 C 1.38602 * 118.55513 * 359.72793 * 25 24 23 27 27 N 1.32272 * 119.20136 * 359.97438 * 26 25 24 28 28 C 1.46957 * 110.88011 * 300.67234 * 21 20 19 29 29 C 1.46956 * 110.99926 * 169.99692 * 18 17 16 30 30 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 32 32 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 33 33 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 34 34 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 35 35 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 36 36 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 37 37 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 38 38 H 1.00902 * 111.00152 * 56.04664 * 14 13 2 39 39 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 40 40 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 41 41 H 1.09008 * 109.47237 * 300.00217 * 16 15 14 42 42 H 1.08999 * 109.47484 * 59.99634 * 16 15 14 43 43 H 1.08993 * 109.46624 * 300.00000 * 17 16 15 44 44 H 1.08999 * 109.46678 * 60.00026 * 17 16 15 45 45 H 1.08997 * 109.48795 * 296.77992 * 19 18 17 46 46 H 1.08998 * 109.48520 * 56.84528 * 19 18 17 47 47 H 1.08993 * 109.49114 * 298.43249 * 20 19 18 48 48 H 1.09001 * 109.50776 * 178.37972 * 20 19 18 49 49 H 1.07996 * 120.40672 * 180.25526 * 24 23 22 50 50 H 1.07999 * 120.72244 * 179.70760 * 25 24 23 51 51 H 1.07998 * 120.40077 * 179.97438 * 26 25 24 52 52 H 1.08997 * 109.49025 * 299.35518 * 28 21 20 53 53 H 1.09006 * 109.50623 * 179.29516 * 28 21 20 54 54 H 1.08997 * 109.48964 * 303.15695 * 29 18 17 55 55 H 1.08998 * 109.48920 * 63.20586 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7025 0.1904 -4.8892 17 6 2.1961 -0.5015 -6.1614 18 7 1.7891 0.2829 -7.3349 19 6 0.3273 0.2844 -7.4862 20 6 -0.0595 1.1750 -8.6693 21 7 0.5927 0.6763 -9.8881 22 6 0.2093 1.4153 -10.9937 23 7 1.1388 2.0010 -11.7343 24 6 0.8066 2.7097 -12.8006 25 6 -0.5324 2.8450 -13.1323 26 6 -1.4790 2.2239 -12.3327 27 7 -1.0790 1.5246 -11.2836 28 6 2.0545 0.6748 -9.7368 29 6 2.4413 -0.2157 -8.5537 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.1263 -0.7995 1.2057 34 1 1.6053 -1.7197 1.2953 35 1 2.9286 -2.0221 3.0617 36 1 3.1263 -0.7997 -1.2054 37 1 1.6053 -1.7200 -1.2950 38 1 1.9883 0.9871 -2.3967 39 1 3.2127 -0.7042 -3.6399 40 1 1.6921 -1.6250 -3.7299 41 1 0.6155 0.2673 -4.9162 42 1 2.1358 1.1886 -4.8266 43 1 3.2829 -0.5787 -6.1347 44 1 1.7623 -1.4995 -6.2238 45 1 -0.0206 -0.7325 -7.6674 46 1 -0.1321 0.6695 -6.5758 47 1 0.2644 2.1976 -8.4759 48 1 -1.1413 1.1550 -8.8015 49 1 1.5690 3.1814 -13.4027 50 1 -0.8316 3.4219 -13.9948 51 1 -2.5305 2.3100 -12.5634 52 1 2.4023 1.6917 -9.5556 53 1 2.5142 0.2899 -10.6472 54 1 3.5231 -0.1954 -8.4216 55 1 2.1177 -1.2385 -8.7469 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602509942.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:27 Heat of formation + Delta-G solvation = 34.861312 kcal Electronic energy + Delta-G solvation = -29301.810991 eV Core-core repulsion = 25372.601756 eV Total energy + Delta-G solvation = -3929.209234 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.25963 -40.25548 -38.65563 -37.31309 -36.00752 -34.78456 -34.31416 -32.66108 -32.12776 -31.26692 -28.61041 -28.07746 -26.62329 -25.93408 -25.01254 -24.36667 -23.97034 -23.36296 -22.10059 -21.04022 -20.88635 -19.02924 -18.84783 -18.45458 -17.13757 -16.94595 -16.54619 -16.31126 -16.16863 -15.99611 -15.81895 -15.67980 -15.56820 -15.49707 -15.29840 -15.12153 -14.62579 -14.54166 -14.33765 -13.97861 -13.67861 -13.42614 -13.18557 -12.98730 -12.88404 -12.73003 -12.56106 -12.47010 -12.38764 -12.13692 -11.99851 -11.95943 -11.94438 -11.86503 -11.73187 -11.61775 -11.44392 -11.29028 -11.20081 -10.55306 -10.51571 -10.19959 -9.51457 -9.38982 -9.34611 -8.65135 -6.34165 -0.04472 0.16606 1.53052 1.61728 1.80671 2.08712 2.58390 2.70874 2.78245 3.17939 3.19162 3.27443 3.57295 3.79956 3.81910 3.89482 3.97482 4.03134 4.12804 4.14775 4.22472 4.25968 4.29803 4.31808 4.36051 4.39576 4.45443 4.49565 4.55588 4.70369 4.72380 4.77780 4.79457 4.80133 4.83258 4.83917 4.89251 4.91748 4.95401 5.07744 5.22322 5.27512 5.30268 5.32452 5.37410 5.48922 5.49814 5.64909 5.69516 5.95876 6.00490 6.02454 6.12397 6.22597 6.23846 6.46795 6.62563 7.12297 7.46978 8.75543 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.030171 B = 0.001270 C = 0.001241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.806905 B =22038.903564 C =22557.915077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.070 4.070 3 H 0.053 0.947 4 C 0.016 3.984 5 C -0.606 4.606 6 H 0.052 0.948 7 C -0.042 4.042 8 N -0.942 5.942 9 Si 1.116 2.884 10 H -0.285 1.285 11 H -0.269 1.269 12 H -0.269 1.269 13 C 0.078 3.922 14 N -0.686 5.686 15 C 0.062 3.938 16 C -0.100 4.100 17 C 0.064 3.936 18 N -0.546 5.546 19 C 0.058 3.942 20 C 0.080 3.920 21 N -0.474 5.474 22 C 0.471 3.529 23 N -0.573 5.573 24 C 0.159 3.841 25 C -0.247 4.247 26 C 0.160 3.840 27 N -0.560 5.560 28 C 0.084 3.916 29 C 0.057 3.943 30 H 0.033 0.967 31 H 0.036 0.964 32 H 0.069 0.931 33 H -0.018 1.018 34 H -0.014 1.014 35 H 0.253 0.747 36 H 0.017 0.983 37 H 0.060 0.940 38 H 0.343 0.657 39 H 0.029 0.971 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.038 0.962 45 H 0.042 0.958 46 H 0.097 0.903 47 H 0.043 0.957 48 H 0.094 0.906 49 H 0.198 0.802 50 H 0.184 0.816 51 H 0.199 0.801 52 H 0.051 0.949 53 H 0.089 0.911 54 H 0.101 0.899 55 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.949 8.894 -39.926 41.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 H 0.072 0.928 4 C -0.022 4.022 5 C -0.644 4.644 6 H 0.071 0.929 7 C -0.239 4.239 8 N -0.580 5.580 9 Si 0.937 3.063 10 H -0.210 1.210 11 H -0.194 1.194 12 H -0.194 1.194 13 C -0.052 4.052 14 N -0.317 5.317 15 C -0.068 4.068 16 C -0.138 4.138 17 C -0.064 4.064 18 N -0.271 5.271 19 C -0.070 4.070 20 C -0.046 4.046 21 N -0.194 5.194 22 C 0.115 3.885 23 N -0.294 5.294 24 C -0.007 4.007 25 C -0.270 4.270 26 C -0.006 4.006 27 N -0.278 5.278 28 C -0.044 4.044 29 C -0.071 4.071 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.000 1.000 34 H 0.004 0.996 35 H 0.063 0.937 36 H 0.035 0.965 37 H 0.079 0.921 38 H 0.161 0.839 39 H 0.048 0.952 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.115 0.885 47 H 0.061 0.939 48 H 0.113 0.887 49 H 0.215 0.785 50 H 0.202 0.798 51 H 0.216 0.784 52 H 0.070 0.930 53 H 0.108 0.892 54 H 0.119 0.881 55 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.198 8.048 -37.464 38.669 hybrid contribution 0.814 -0.030 -2.230 2.375 sum -4.383 8.018 -39.694 40.732 Atomic orbital electron populations 1.21471 0.94518 1.00311 1.00606 1.20921 0.96855 0.98321 0.92787 0.92838 1.19192 0.93695 0.94893 0.94385 1.22450 1.38045 1.10459 0.93447 0.92922 1.27407 0.94029 0.97251 1.05196 1.70920 1.38288 1.16019 1.32773 0.82954 0.76953 0.74557 0.71823 1.21042 1.19389 1.19439 1.21832 0.96441 0.97326 0.89564 1.60443 1.64162 1.05941 1.01155 1.21910 0.97312 0.98311 0.89251 1.21409 1.01672 0.99134 0.91630 1.21992 1.01076 0.94424 0.88923 1.62173 1.07167 1.54321 1.03480 1.22221 0.88362 0.98723 0.97712 1.22168 0.99643 0.96846 0.85982 1.58660 1.10940 1.47540 1.02277 1.21188 0.85986 0.88300 0.93048 1.68392 1.38627 1.12439 1.09916 1.23735 0.97126 0.89719 0.90097 1.23151 0.94503 1.04922 1.04415 1.23760 1.02678 0.87395 0.86791 1.68029 1.17066 1.21057 1.21695 1.22009 0.83519 1.00091 0.98739 1.22256 1.00296 0.96382 0.88158 0.94744 0.94506 0.91169 0.99963 0.99593 0.93729 0.96458 0.92104 0.83868 0.95230 0.91542 0.91339 0.91401 0.89895 0.94421 0.93973 0.88456 0.93862 0.88747 0.78517 0.79843 0.78412 0.93023 0.89241 0.88100 0.94103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.37 8.89 71.98 0.64 -3.73 16 2 C -0.07 -2.91 2.48 -10.79 -0.03 -2.93 16 3 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 4 C 0.02 0.84 3.76 29.85 0.11 0.95 16 5 C -0.61 -35.07 8.41 25.60 0.22 -34.86 16 6 H 0.05 2.96 7.06 -2.91 -0.02 2.94 16 7 C -0.04 -2.49 5.46 84.65 0.46 -2.03 16 8 N -0.94 -59.79 13.65 21.45 0.29 -59.49 16 9 Si 1.12 51.17 29.90 68.60 2.05 53.22 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 C 0.08 2.67 5.07 86.31 0.44 3.11 16 14 N -0.69 -18.75 5.96 -513.89 -3.06 -21.81 16 15 C 0.06 1.36 5.68 86.30 0.49 1.85 16 16 C -0.10 -1.80 5.41 30.59 0.17 -1.64 16 17 C 0.06 1.01 4.96 86.30 0.43 1.44 16 18 N -0.55 -9.05 4.71 -895.73 -4.22 -13.27 16 19 C 0.06 0.97 5.41 86.31 0.47 1.43 16 20 C 0.08 1.44 5.46 86.31 0.47 1.91 16 21 N -0.47 -9.25 4.77 -708.32 -3.38 -12.63 16 22 C 0.47 9.40 7.17 261.48 1.88 11.28 16 23 N -0.57 -10.05 8.70 -197.98 -1.72 -11.77 16 24 C 0.16 1.60 11.30 84.72 0.96 2.56 16 25 C -0.25 -1.64 10.16 22.45 0.23 -1.42 16 26 C 0.16 1.68 11.30 84.71 0.96 2.64 16 27 N -0.56 -10.37 9.72 -197.99 -1.92 -12.29 16 28 C 0.08 1.42 4.76 86.31 0.41 1.83 16 29 C 0.06 0.86 5.61 86.31 0.48 1.34 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 31 H 0.04 1.54 6.95 -2.39 -0.02 1.53 16 32 H 0.07 2.37 7.75 -2.39 -0.02 2.35 16 33 H -0.02 -1.01 8.01 -2.39 -0.02 -1.03 16 34 H -0.01 -0.81 8.00 -2.39 -0.02 -0.83 16 35 H 0.25 16.31 7.22 -92.71 -0.67 15.64 16 36 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.34 8.86 8.73 -89.69 -0.78 8.08 16 39 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.07 1.30 6.49 -2.38 -0.02 1.28 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.21 8.03 -2.39 -0.02 1.19 16 44 H 0.04 0.61 8.12 -2.39 -0.02 0.59 16 45 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.10 1.54 6.34 -2.39 -0.02 1.52 16 47 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.09 1.72 7.64 -2.39 -0.02 1.71 16 49 H 0.20 0.56 8.06 -2.91 -0.02 0.53 16 50 H 0.18 -0.22 8.06 -2.91 -0.02 -0.24 16 51 H 0.20 0.66 8.06 -2.91 -0.02 0.64 16 52 H 0.05 0.98 8.03 -2.39 -0.02 0.96 16 53 H 0.09 1.50 7.81 -2.38 -0.02 1.48 16 54 H 0.10 1.23 8.07 -2.39 -0.02 1.21 16 55 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -73.72 429.87 -3.02 -76.74 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.16 Total: 17.56 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 8.78 Total: -16.25 kcal Atomic # 7 Polarization: -117.26 SS G_CDS: -14.01 Total: -131.27 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.05 Total: 53.22 kcal Total: -73.72 -3.02 -76.74 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602509942.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.600 kcal (2) G-P(sol) polarization free energy of solvation -73.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds