Wall clock time and date at job start Wed Apr 1 2020 05:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 116.99908 * 2 1 4 4 O 1.20828 * 119.99856 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00106 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47455 * 179.97438 * 5 3 2 7 7 C 1.36777 * 120.00040 * 95.45927 * 6 5 3 8 8 H 1.08002 * 120.00328 * 226.81224 * 7 6 5 9 9 C 1.39082 * 120.00131 * 46.80454 * 7 6 5 10 10 N 1.31349 * 119.99518 * 357.40447 * 9 7 6 11 11 Si 1.86800 * 120.00447 * 177.40612 * 9 7 6 12 12 H 1.48499 * 109.47051 * 89.99925 * 11 9 7 13 13 H 1.48499 * 109.47133 * 210.00175 * 11 9 7 14 14 H 1.48502 * 109.46871 * 329.99947 * 11 9 7 15 15 C 1.34777 * 120.00375 * 275.18700 * 6 5 3 16 16 O 1.21688 * 119.99778 * 5.78529 * 15 6 5 17 17 C 1.46995 * 120.00198 * 185.78454 * 15 6 5 18 18 N 1.30657 * 125.53152 * 185.98233 * 17 15 6 19 19 C 1.30689 * 115.89972 * 179.97438 * 18 17 15 20 20 C 1.34400 * 115.75631 * 359.97438 * 19 18 17 21 21 Br 1.89093 * 125.45452 * 180.02562 * 20 19 18 22 22 S 1.71070 * 109.08903 * 359.75258 * 20 19 18 23 23 H 1.08996 * 109.47150 * 300.00527 * 1 2 3 24 24 H 1.09009 * 109.46797 * 60.00397 * 1 2 3 25 25 H 1.08997 * 109.47175 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47242 * 59.99980 * 5 3 2 27 27 H 1.09000 * 109.47141 * 299.99723 * 5 3 2 28 28 H 0.96999 * 119.99662 * 179.97438 * 10 9 7 29 29 H 1.07994 * 122.11867 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.2832 3.3044 1.1787 8 1 3.8793 4.2836 1.3898 9 6 5.1097 2.6786 2.1058 10 7 5.5594 1.4668 1.8720 11 14 5.5802 3.5611 3.6835 12 1 4.5812 3.2550 4.7387 13 1 6.9224 3.1042 4.1249 14 1 5.6110 5.0259 3.4410 15 6 4.0721 3.3552 -1.1629 16 8 3.7087 2.8325 -2.2000 17 6 4.6096 4.7233 -1.1784 18 7 4.6438 5.5140 -2.2180 19 6 5.1645 6.6961 -2.0192 20 6 5.5957 6.9419 -0.7702 21 35 6.3899 8.5537 -0.1813 22 16 5.3039 5.5658 0.2033 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 3.9564 0.7806 -0.8892 27 1 3.9557 0.7811 0.8908 28 1 6.1362 1.0305 2.5184 29 1 5.2433 7.4289 -2.8086 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617999467.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:39 Heat of formation + Delta-G solvation = -62.245390 kcal Electronic energy + Delta-G solvation = -20418.359682 eV Core-core repulsion = 16901.655035 eV Total energy + Delta-G solvation = -3516.704647 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.961 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.95940 -39.23479 -38.18755 -35.81573 -35.10534 -32.11634 -31.89559 -29.54217 -28.26860 -26.69481 -25.79171 -24.39629 -21.65947 -20.17042 -19.30674 -18.17944 -17.19390 -16.99306 -16.29328 -15.81993 -15.56137 -15.03659 -14.83775 -14.48128 -14.28594 -13.42156 -13.15744 -12.95153 -12.71493 -12.59912 -11.98197 -11.78883 -11.62408 -11.56600 -11.18975 -10.99585 -10.89542 -10.68130 -10.29146 -10.11282 -9.81441 -9.63632 -9.39084 -8.84594 -8.74972 -8.25164 -8.01716 -6.93954 -4.82712 0.75642 1.39420 2.18899 2.38404 2.83193 2.92282 2.95021 2.98084 2.99888 3.23840 3.68985 4.04214 4.06132 4.55411 5.20596 5.41604 5.48472 5.55523 5.63371 5.73311 5.85741 6.16952 6.43372 6.58442 6.87487 6.95029 7.32290 7.74357 8.07528 8.44375 8.48848 8.87560 9.30833 10.03661 Molecular weight = 347.96amu Principal moments of inertia in cm(-1) A = 0.015501 B = 0.004443 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.912440 B = 6300.932694 C = 7567.627592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.367 6.367 3 C 0.445 3.555 4 O -0.505 6.505 5 C 0.125 3.875 6 N -0.418 5.418 7 C -0.340 4.340 8 H 0.104 0.896 9 C 0.065 3.935 10 N -0.839 5.839 11 Si 0.910 3.090 12 H -0.265 1.265 13 H -0.270 1.270 14 H -0.250 1.250 15 C 0.559 3.441 16 O -0.554 6.554 17 C 0.037 3.963 18 N -0.428 5.428 19 C 0.062 3.938 20 C -0.341 4.341 21 Br -0.005 7.005 22 S 0.318 5.682 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.161 0.839 28 H 0.286 0.714 29 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.353 5.080 2.669 5.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.287 3.713 4 O -0.391 6.391 5 C 0.000 4.000 6 N -0.138 5.138 7 C -0.476 4.476 8 H 0.121 0.879 9 C -0.148 4.148 10 N -0.472 5.472 11 Si 0.733 3.267 12 H -0.190 1.190 13 H -0.194 1.194 14 H -0.174 1.174 15 C 0.345 3.655 16 O -0.435 6.435 17 C -0.238 4.238 18 N -0.145 5.145 19 C -0.100 4.100 20 C -0.542 4.542 21 Br 0.078 6.922 22 S 0.582 5.418 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.112 0.888 26 H 0.120 0.880 27 H 0.178 0.822 28 H 0.098 0.902 29 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.348 5.150 2.955 6.089 hybrid contribution -0.147 0.843 -0.140 0.868 sum 1.201 5.993 2.815 6.729 Atomic orbital electron populations 1.23104 0.77951 1.02685 1.02046 1.86537 1.22304 1.34631 1.84909 1.25220 0.93528 0.80950 0.71600 1.90595 1.67038 1.36440 1.45046 1.21328 0.84373 0.86165 1.08099 1.42732 1.57068 1.09302 1.04739 1.19542 1.29334 1.03130 0.95614 0.87938 1.25747 0.93308 0.95639 1.00061 1.69492 1.29272 1.11910 1.36525 0.86110 0.79071 0.81057 0.80422 1.19033 1.19425 1.17352 1.16986 0.81267 0.83114 0.84161 1.90731 1.51981 1.68352 1.32460 1.27438 1.04972 0.99660 0.91714 1.66880 1.15846 1.02368 1.29384 1.21556 0.98944 0.94435 0.95086 1.28782 1.15808 1.03999 1.05622 1.96545 1.80461 1.25982 1.89243 1.85567 1.47999 0.98246 1.10036 0.92464 0.92457 0.88831 0.87991 0.82248 0.90226 0.81787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 15 2 O -0.37 -6.77 10.57 -39.26 -0.41 -7.19 15 3 C 0.45 9.68 7.99 36.00 0.29 9.97 15 4 O -0.50 -12.33 16.06 -18.75 -0.30 -12.63 15 5 C 0.13 2.75 5.40 -5.20 -0.03 2.72 15 6 N -0.42 -9.92 2.05 -117.48 -0.24 -10.16 15 7 C -0.34 -7.69 6.57 -15.03 -0.10 -7.79 15 8 H 0.10 2.29 5.93 -41.73 -0.25 2.04 15 9 C 0.07 1.39 5.34 -17.44 -0.09 1.30 15 10 N -0.84 -18.25 10.92 55.50 0.61 -17.64 15 11 Si 0.91 16.48 29.55 -169.99 -5.02 11.45 15 12 H -0.27 -4.81 7.11 56.52 0.40 -4.40 15 13 H -0.27 -4.81 7.11 56.52 0.40 -4.41 15 14 H -0.25 -4.34 7.11 56.52 0.40 -3.93 15 15 C 0.56 13.99 7.43 -12.71 -0.09 13.89 15 16 O -0.55 -15.08 16.80 5.20 0.09 -15.00 15 17 C 0.04 0.84 7.27 -14.51 -0.11 0.74 15 18 N -0.43 -9.48 10.60 -11.53 -0.12 -9.61 15 19 C 0.06 1.14 11.19 -19.39 -0.22 0.92 15 20 C -0.34 -6.02 6.82 29.38 0.20 -5.82 15 21 Br 0.00 -0.07 34.08 -68.01 -2.32 -2.39 15 22 S 0.32 6.16 18.74 -107.50 -2.01 4.15 15 23 H 0.06 0.80 8.13 -51.93 -0.42 0.38 15 24 H 0.06 0.83 8.13 -51.92 -0.42 0.41 15 25 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.10 2.17 7.67 -51.93 -0.40 1.78 15 27 H 0.16 3.46 5.43 -51.93 -0.28 3.18 15 28 H 0.29 5.77 8.31 -40.82 -0.34 5.43 15 29 H 0.16 2.55 8.06 -52.49 -0.42 2.13 15 LS Contribution 299.07 15.07 4.51 4.51 Total: -1.00 -27.76 299.07 -6.07 -33.83 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -1.75 Total: 3.15 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 0.92 Total: 17.52 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.24 Total: -37.41 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.63 Total: -34.81 kcal Atomic # 14 Polarization: 16.48 SS G_CDS: -5.02 Total: 11.45 kcal Atomic # 16 Polarization: 6.16 SS G_CDS: -2.01 Total: 4.15 kcal Atomic # 35 Polarization: -0.07 SS G_CDS: -2.32 Total: -2.39 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.76 -6.07 -33.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617999467.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.419 kcal (2) G-P(sol) polarization free energy of solvation -27.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds