Wall clock time and date at job start Wed Apr 1 2020 05:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 116.99908 * 2 1 4 4 O 1.20828 * 119.99856 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00106 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47455 * 179.97438 * 5 3 2 7 7 C 1.36777 * 120.00040 * 95.45927 * 6 5 3 8 8 H 1.08002 * 120.00328 * 226.81224 * 7 6 5 9 9 C 1.39082 * 120.00131 * 46.80454 * 7 6 5 10 10 N 1.31349 * 119.99518 * 357.40447 * 9 7 6 11 11 Si 1.86800 * 120.00447 * 177.40612 * 9 7 6 12 12 H 1.48499 * 109.47051 * 89.99925 * 11 9 7 13 13 H 1.48499 * 109.47133 * 210.00175 * 11 9 7 14 14 H 1.48502 * 109.46871 * 329.99947 * 11 9 7 15 15 C 1.34777 * 120.00375 * 275.18700 * 6 5 3 16 16 O 1.21688 * 119.99778 * 5.78529 * 15 6 5 17 17 C 1.46995 * 120.00198 * 185.78454 * 15 6 5 18 18 N 1.30657 * 125.53152 * 185.98233 * 17 15 6 19 19 C 1.30689 * 115.89972 * 179.97438 * 18 17 15 20 20 C 1.34400 * 115.75631 * 359.97438 * 19 18 17 21 21 Br 1.89093 * 125.45452 * 180.02562 * 20 19 18 22 22 S 1.71070 * 109.08903 * 359.75258 * 20 19 18 23 23 H 1.08996 * 109.47150 * 300.00527 * 1 2 3 24 24 H 1.09009 * 109.46797 * 60.00397 * 1 2 3 25 25 H 1.08997 * 109.47175 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47242 * 59.99980 * 5 3 2 27 27 H 1.09000 * 109.47141 * 299.99723 * 5 3 2 28 28 H 0.96999 * 119.99662 * 179.97438 * 10 9 7 29 29 H 1.07994 * 122.11867 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.2832 3.3044 1.1787 8 1 3.8793 4.2836 1.3898 9 6 5.1097 2.6786 2.1058 10 7 5.5594 1.4668 1.8720 11 14 5.5802 3.5611 3.6835 12 1 4.5812 3.2550 4.7387 13 1 6.9224 3.1042 4.1249 14 1 5.6110 5.0259 3.4410 15 6 4.0721 3.3552 -1.1629 16 8 3.7087 2.8325 -2.2000 17 6 4.6096 4.7233 -1.1784 18 7 4.6438 5.5140 -2.2180 19 6 5.1645 6.6961 -2.0192 20 6 5.5957 6.9419 -0.7702 21 35 6.3899 8.5537 -0.1813 22 16 5.3039 5.5658 0.2033 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 3.9564 0.7806 -0.8892 27 1 3.9557 0.7811 0.8908 28 1 6.1362 1.0305 2.5184 29 1 5.2433 7.4289 -2.8086 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617999467.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:39 Heat of formation + Delta-G solvation = -79.323209 kcal Electronic energy + Delta-G solvation = -20419.100232 eV Core-core repulsion = 16901.655035 eV Total energy + Delta-G solvation = -3517.445197 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.961 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.66015 -40.85713 -39.86812 -37.49478 -36.87534 -33.83442 -33.31757 -31.16002 -29.75351 -28.08380 -27.47891 -26.01233 -23.28163 -21.82937 -20.97809 -19.77773 -18.86322 -18.66997 -17.93794 -17.40336 -17.17013 -16.69301 -16.47463 -16.11903 -15.78771 -14.99835 -14.77816 -14.45783 -14.23221 -14.20290 -13.57243 -13.41686 -13.19300 -12.92658 -12.80135 -12.43076 -12.32836 -12.07659 -11.77217 -11.65428 -11.46854 -11.31091 -11.00867 -10.53114 -10.26917 -9.81952 -9.72250 -8.58098 -6.55421 -0.83810 -0.08548 0.72522 0.82099 1.23873 1.28281 1.45428 1.47708 1.59066 1.71893 2.15487 2.34592 2.43384 2.89091 3.65673 4.01499 4.06536 4.21988 4.30516 4.33258 4.44234 4.66297 4.84755 4.95168 5.17353 5.34457 5.57751 6.05857 6.52329 6.75175 6.81255 7.10252 7.54270 8.42109 Molecular weight = 347.96amu Principal moments of inertia in cm(-1) A = 0.015501 B = 0.004443 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.912440 B = 6300.932694 C = 7567.627592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.450 3.550 4 O -0.537 6.537 5 C 0.122 3.878 6 N -0.418 5.418 7 C -0.365 4.365 8 H 0.104 0.896 9 C 0.041 3.959 10 N -0.858 5.858 11 Si 0.956 3.044 12 H -0.263 1.263 13 H -0.262 1.262 14 H -0.236 1.236 15 C 0.541 3.459 16 O -0.597 6.597 17 C -0.007 4.007 18 N -0.451 5.451 19 C 0.055 3.945 20 C -0.332 4.332 21 Br 0.039 6.961 22 S 0.354 5.646 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.140 0.860 26 H 0.100 0.900 27 H 0.164 0.836 28 H 0.294 0.706 29 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 6.384 4.166 7.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.293 3.707 4 O -0.427 6.427 5 C -0.003 4.003 6 N -0.137 5.137 7 C -0.499 4.499 8 H 0.121 0.879 9 C -0.170 4.170 10 N -0.491 5.491 11 Si 0.776 3.224 12 H -0.188 1.188 13 H -0.187 1.187 14 H -0.159 1.159 15 C 0.328 3.672 16 O -0.482 6.482 17 C -0.280 4.280 18 N -0.169 5.169 19 C -0.106 4.106 20 C -0.533 4.533 21 Br 0.121 6.879 22 S 0.616 5.384 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.158 0.842 26 H 0.118 0.882 27 H 0.180 0.820 28 H 0.105 0.895 29 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 2.024 6.405 4.476 8.072 hybrid contribution -0.345 0.502 -0.569 0.834 sum 1.679 6.908 3.906 8.111 Atomic orbital electron populations 1.23523 0.75244 1.05725 1.02001 1.86505 1.24847 1.32589 1.84102 1.25052 0.93435 0.81359 0.70856 1.90570 1.67671 1.37656 1.46769 1.21368 0.85029 0.85861 1.08018 1.42918 1.56205 1.09644 1.04912 1.19759 1.30690 1.03841 0.95564 0.87938 1.26389 0.92597 0.95993 1.02049 1.69524 1.29318 1.12696 1.37566 0.85431 0.79007 0.80968 0.77018 1.18804 1.18653 1.15874 1.17423 0.81448 0.84296 0.83998 1.90663 1.54217 1.69727 1.33630 1.27126 1.07650 0.99584 0.93652 1.66859 1.16354 1.03602 1.30091 1.21957 0.98528 0.93838 0.96311 1.28896 1.14514 1.05029 1.04901 1.96603 1.79562 1.22955 1.88782 1.85142 1.46724 0.97957 1.08601 0.92208 0.92894 0.84232 0.88212 0.81980 0.89494 0.78821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.56 113.37 1.20 1.97 15 2 O -0.36 -13.39 10.57 -51.43 -0.54 -13.93 15 3 C 0.45 20.04 7.99 71.23 0.57 20.61 15 4 O -0.54 -27.00 16.06 21.96 0.35 -26.65 15 5 C 0.12 5.53 5.40 85.63 0.46 6.00 15 6 N -0.42 -20.44 2.05 -643.83 -1.32 -21.76 15 7 C -0.36 -16.58 6.57 84.12 0.55 -16.03 15 8 H 0.10 4.58 5.93 -9.75 -0.06 4.52 15 9 C 0.04 1.71 5.34 84.97 0.45 2.16 15 10 N -0.86 -37.14 10.92 21.69 0.24 -36.90 15 11 Si 0.96 32.06 29.55 68.60 2.03 34.08 15 12 H -0.26 -8.76 7.11 99.48 0.71 -8.05 15 13 H -0.26 -8.48 7.11 99.48 0.71 -7.77 15 14 H -0.24 -7.32 7.11 99.48 0.71 -6.61 15 15 C 0.54 28.19 7.43 86.54 0.64 28.83 15 16 O -0.60 -34.23 16.80 -4.31 -0.07 -34.31 15 17 C -0.01 -0.34 7.27 87.16 0.63 0.29 15 18 N -0.45 -20.14 10.60 -190.39 -2.02 -22.15 15 19 C 0.05 1.95 11.19 83.98 0.94 2.89 15 20 C -0.33 -11.02 6.82 66.94 0.46 -10.56 15 21 Br 0.04 0.98 34.08 -20.37 -0.69 0.29 15 22 S 0.35 13.34 18.74 -56.49 -1.06 12.29 15 23 H 0.06 1.62 8.13 -2.39 -0.02 1.60 15 24 H 0.05 1.51 8.13 -2.38 -0.02 1.49 15 25 H 0.14 2.54 8.14 -2.39 -0.02 2.52 15 26 H 0.10 4.49 7.67 -2.38 -0.02 4.47 15 27 H 0.16 7.21 5.43 -2.39 -0.01 7.20 15 28 H 0.29 11.63 8.31 -92.71 -0.77 10.86 15 29 H 0.20 5.55 8.06 -2.91 -0.02 5.53 15 Total: -1.00 -61.13 299.07 4.00 -57.13 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.18 Total: 15.76 kcal Atomic # 6 Polarization: 30.25 SS G_CDS: 5.91 Total: 36.16 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -3.10 Total: -80.82 kcal Atomic # 8 Polarization: -74.62 SS G_CDS: -0.26 Total: -74.88 kcal Atomic # 14 Polarization: 32.06 SS G_CDS: 2.03 Total: 34.08 kcal Atomic # 16 Polarization: 13.34 SS G_CDS: -1.06 Total: 12.29 kcal Atomic # 35 Polarization: 0.98 SS G_CDS: -0.69 Total: 0.29 kcal Total: -61.13 4.00 -57.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617999467.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.194 kcal (2) G-P(sol) polarization free energy of solvation -61.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds