Wall clock time and date at job start Wed Apr 1 2020 05:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42100 * 110.54015 * 2 1 4 4 O 1.42094 * 110.54346 * 223.24119 * 2 1 3 5 5 C 1.76203 * 104.44881 * 111.61646 * 2 1 3 6 6 C 1.38436 * 119.90798 * 90.00232 * 5 2 1 7 7 C 1.38298 * 120.33072 * 179.97438 * 6 5 2 8 8 C 1.38089 * 120.14340 * 0.02562 * 7 6 5 9 9 Br 1.89099 * 120.09458 * 179.97438 * 8 7 6 10 10 C 1.39756 * 119.81076 * 359.97438 * 8 7 6 11 11 C 1.47606 * 120.15910 * 179.97438 * 10 8 7 12 12 O 1.21516 * 119.99843 * 359.72731 * 11 10 8 13 13 O 1.34740 * 119.99993 * 179.97438 * 11 10 8 14 14 C 1.34856 * 116.99632 * 180.02562 * 13 11 10 15 15 H 1.08001 * 120.00503 * 0.02562 * 14 13 11 16 16 C 1.38816 * 119.99650 * 180.02562 * 14 13 11 17 17 N 1.31418 * 119.99797 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 119.99976 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47168 * 90.00198 * 18 16 14 20 20 H 1.48505 * 109.47136 * 210.00020 * 18 16 14 21 21 H 1.48499 * 109.47353 * 330.00418 * 18 16 14 22 22 C 1.37875 * 119.91311 * 270.25779 * 5 2 1 23 23 H 1.09006 * 109.47248 * 308.37637 * 1 2 3 24 24 H 1.08996 * 109.46873 * 68.37970 * 1 2 3 25 25 H 1.09004 * 109.46832 * 188.38187 * 1 2 3 26 26 H 1.08003 * 119.83296 * 359.97349 * 6 5 2 27 27 H 1.08000 * 119.93041 * 179.97438 * 7 6 5 28 28 H 0.96996 * 119.99880 * 179.97438 * 17 16 14 29 29 H 1.08001 * 120.07746 * 0.02562 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9693 -0.9115 5 6 2.2537 -0.6286 1.5863 6 6 2.4260 -1.9904 1.7656 7 6 2.7715 -2.4932 3.0068 8 6 2.9467 -1.6384 4.0770 9 35 3.4185 -2.3274 5.7736 10 6 2.7743 -0.2625 3.9026 11 6 2.9591 0.6582 5.0415 12 8 3.2570 0.2199 6.1350 13 8 2.7925 1.9842 4.8696 14 6 2.9768 2.7695 5.9504 15 1 3.2459 2.3284 6.8989 16 6 2.8207 4.1447 5.8438 17 7 3.0008 4.9100 6.8969 18 14 2.3561 4.9075 4.2033 19 1 0.8770 4.9809 4.0927 20 1 2.9276 6.2753 4.1138 21 1 2.8941 4.0730 3.0992 22 6 2.4200 0.2367 2.6468 23 1 -0.3634 0.6380 0.8057 24 1 -0.3633 0.3786 -0.9553 25 1 -0.3633 -1.0167 0.1498 26 1 2.2898 -2.6636 0.9321 27 1 2.9039 -3.5568 3.1395 28 1 2.8920 5.8709 6.8224 29 1 2.2808 1.2984 2.5061 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729018409.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:33 Heat of formation + Delta-G solvation = -93.889790 kcal Electronic energy + Delta-G solvation = -20116.588665 eV Core-core repulsion = 16566.219062 eV Total energy + Delta-G solvation = -3550.369603 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.955 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.93175 -38.52494 -37.27035 -36.10949 -35.49181 -32.57129 -32.44060 -31.51533 -29.88679 -29.39030 -25.97750 -23.79800 -22.97721 -20.85808 -18.95855 -18.22686 -17.93508 -16.73143 -16.40962 -16.01846 -15.91143 -15.18874 -15.03828 -14.96473 -14.19877 -13.90958 -13.62666 -13.45466 -13.26301 -12.64560 -12.45192 -12.29292 -12.23440 -12.12694 -11.82577 -11.43925 -11.30461 -10.97608 -10.93344 -10.56998 -10.53163 -10.40592 -9.81654 -9.20941 -9.08208 -8.78178 -8.52228 -6.50906 -4.20494 -0.18023 0.37006 0.84868 1.63060 2.60393 2.78066 3.16544 3.19831 3.35488 3.64547 3.77451 3.86154 3.94188 4.16262 4.46493 4.50854 4.68303 4.77438 5.02376 5.12028 5.21170 5.37301 5.46187 5.62376 5.74969 5.78293 6.30725 6.46335 7.58218 7.90305 8.49340 8.85912 9.52263 10.55970 Molecular weight = 347.95amu Principal moments of inertia in cm(-1) A = 0.008281 B = 0.006846 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.398755 B = 4089.036015 C = 7255.335917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.500 3.500 3 O -0.928 6.928 4 O -0.938 6.938 5 C -0.662 4.662 6 C -0.011 4.011 7 C -0.121 4.121 8 C -0.006 4.006 9 Br 0.002 6.998 10 C -0.082 4.082 11 C 0.427 3.573 12 O -0.505 6.505 13 O -0.239 6.239 14 C -0.368 4.368 15 H 0.115 0.885 16 C 0.067 3.933 17 N -0.861 5.861 18 Si 0.896 3.104 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.251 1.251 22 C 0.021 3.979 23 H 0.136 0.864 24 H 0.132 0.868 25 H 0.132 0.868 26 H 0.151 0.849 27 H 0.146 0.854 28 H 0.283 0.717 29 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.787 -14.729 -12.437 20.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.679 3.321 3 O -0.925 6.925 4 O -0.935 6.935 5 C -0.749 4.749 6 C -0.031 4.031 7 C -0.142 4.142 8 C -0.087 4.087 9 Br 0.090 6.910 10 C -0.086 4.086 11 C 0.273 3.727 12 O -0.400 6.400 13 O -0.147 6.147 14 C -0.443 4.443 15 H 0.132 0.868 16 C -0.138 4.138 17 N -0.499 5.499 18 Si 0.720 3.280 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.175 1.175 22 C 0.001 3.999 23 H 0.154 0.846 24 H 0.151 0.849 25 H 0.151 0.849 26 H 0.169 0.831 27 H 0.164 0.836 28 H 0.093 0.907 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.953 -14.609 -12.017 19.554 hybrid contribution -0.731 0.389 -0.105 0.834 sum -5.684 -14.220 -12.122 19.531 Atomic orbital electron populations 1.30225 1.25420 1.12215 1.12129 1.05244 0.78032 0.74784 0.74024 1.93640 1.77152 1.36060 1.85667 1.93577 1.77481 1.61812 1.60610 1.30653 1.19107 1.02920 1.22175 1.21013 0.91817 0.93099 0.97216 1.21145 1.01566 1.00055 0.91420 1.22357 0.98060 0.94013 0.94243 1.96814 1.90283 1.83016 1.20923 1.19296 1.03442 0.91850 0.94040 1.20120 0.82303 0.82685 0.87599 1.90865 1.46737 1.76452 1.25901 1.83503 1.73885 1.16585 1.40752 1.20754 1.47031 0.87857 0.88690 0.86794 1.24589 0.95688 0.94734 0.98832 1.69584 1.45062 1.05917 1.29335 0.86340 0.79468 0.78943 0.83231 1.19523 1.20343 1.17493 1.21333 0.88383 1.00633 0.89578 0.84570 0.84910 0.84899 0.83117 0.83585 0.90673 0.82129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.71 10.80 101.05 1.09 -2.62 15 2 S 2.50 25.53 5.80 -107.50 -0.62 24.91 15 3 O -0.93 -13.45 17.12 -57.54 -0.99 -14.44 15 4 O -0.94 -11.28 17.11 -57.54 -0.98 -12.27 15 5 C -0.66 -8.16 5.65 -39.64 -0.22 -8.38 15 6 C -0.01 -0.12 9.46 -39.49 -0.37 -0.50 15 7 C -0.12 -1.45 9.78 -39.61 -0.39 -1.83 15 8 C -0.01 -0.09 6.26 -39.07 -0.24 -0.33 15 9 Br 0.00 0.03 30.40 -68.01 -2.07 -2.03 15 10 C -0.08 -1.52 5.88 -104.96 -0.62 -2.14 15 11 C 0.43 10.04 7.82 34.55 0.27 10.31 15 12 O -0.50 -12.79 12.72 -19.28 -0.25 -13.04 15 13 O -0.24 -6.16 7.82 -21.67 -0.17 -6.33 15 14 C -0.37 -10.61 10.11 30.95 0.31 -10.30 15 15 H 0.11 3.60 7.09 -52.49 -0.37 3.23 15 16 C 0.07 1.87 5.50 -17.51 -0.10 1.77 15 17 N -0.86 -24.75 13.96 55.49 0.77 -23.97 15 18 Si 0.90 20.79 28.62 -169.99 -4.86 15.92 15 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 21 H -0.25 -5.76 7.11 56.52 0.40 -5.36 15 22 C 0.02 0.33 9.03 -39.17 -0.35 -0.02 15 23 H 0.14 0.72 8.14 -51.92 -0.42 0.30 15 24 H 0.13 0.52 8.14 -51.93 -0.42 0.10 15 25 H 0.13 0.48 8.14 -51.92 -0.42 0.06 15 26 H 0.15 1.12 7.56 -52.48 -0.40 0.72 15 27 H 0.15 1.29 8.06 -52.49 -0.42 0.86 15 28 H 0.28 7.41 8.31 -40.82 -0.34 7.07 15 29 H 0.16 2.62 7.12 -52.49 -0.37 2.25 15 LS Contribution 297.72 15.07 4.49 4.49 Total: -1.00 -35.75 297.72 -7.27 -43.02 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: -1.97 Total: -2.22 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -0.62 Total: -14.04 kcal Atomic # 7 Polarization: -24.75 SS G_CDS: 0.77 Total: -23.97 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -2.38 Total: -46.07 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.86 Total: 15.92 kcal Atomic # 16 Polarization: 25.53 SS G_CDS: -0.62 Total: 24.91 kcal Atomic # 35 Polarization: 0.03 SS G_CDS: -2.07 Total: -2.03 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -35.75 -7.27 -43.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729018409.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.871 kcal (2) G-P(sol) polarization free energy of solvation -35.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds