Wall clock time and date at job start Wed Apr 1 2020 05:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42100 * 110.54015 * 2 1 4 4 O 1.42094 * 110.54346 * 223.24119 * 2 1 3 5 5 C 1.76203 * 104.44881 * 111.61646 * 2 1 3 6 6 C 1.38436 * 119.90798 * 90.00232 * 5 2 1 7 7 C 1.38298 * 120.33072 * 179.97438 * 6 5 2 8 8 C 1.38089 * 120.14340 * 0.02562 * 7 6 5 9 9 Br 1.89099 * 120.09458 * 179.97438 * 8 7 6 10 10 C 1.39756 * 119.81076 * 359.97438 * 8 7 6 11 11 C 1.47606 * 120.15910 * 179.97438 * 10 8 7 12 12 O 1.21516 * 119.99843 * 359.72731 * 11 10 8 13 13 O 1.34740 * 119.99993 * 179.97438 * 11 10 8 14 14 C 1.34856 * 116.99632 * 180.02562 * 13 11 10 15 15 H 1.08001 * 120.00503 * 0.02562 * 14 13 11 16 16 C 1.38816 * 119.99650 * 180.02562 * 14 13 11 17 17 N 1.31418 * 119.99797 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 119.99976 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47168 * 90.00198 * 18 16 14 20 20 H 1.48505 * 109.47136 * 210.00020 * 18 16 14 21 21 H 1.48499 * 109.47353 * 330.00418 * 18 16 14 22 22 C 1.37875 * 119.91311 * 270.25779 * 5 2 1 23 23 H 1.09006 * 109.47248 * 308.37637 * 1 2 3 24 24 H 1.08996 * 109.46873 * 68.37970 * 1 2 3 25 25 H 1.09004 * 109.46832 * 188.38187 * 1 2 3 26 26 H 1.08003 * 119.83296 * 359.97349 * 6 5 2 27 27 H 1.08000 * 119.93041 * 179.97438 * 7 6 5 28 28 H 0.96996 * 119.99880 * 179.97438 * 17 16 14 29 29 H 1.08001 * 120.07746 * 0.02562 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9693 -0.9115 5 6 2.2537 -0.6286 1.5863 6 6 2.4260 -1.9904 1.7656 7 6 2.7715 -2.4932 3.0068 8 6 2.9467 -1.6384 4.0770 9 35 3.4185 -2.3274 5.7736 10 6 2.7743 -0.2625 3.9026 11 6 2.9591 0.6582 5.0415 12 8 3.2570 0.2199 6.1350 13 8 2.7925 1.9842 4.8696 14 6 2.9768 2.7695 5.9504 15 1 3.2459 2.3284 6.8989 16 6 2.8207 4.1447 5.8438 17 7 3.0008 4.9100 6.8969 18 14 2.3561 4.9075 4.2033 19 1 0.8770 4.9809 4.0927 20 1 2.9276 6.2753 4.1138 21 1 2.8941 4.0730 3.0992 22 6 2.4200 0.2367 2.6468 23 1 -0.3634 0.6380 0.8057 24 1 -0.3633 0.3786 -0.9553 25 1 -0.3633 -1.0167 0.1498 26 1 2.2898 -2.6636 0.9321 27 1 2.9039 -3.5568 3.1395 28 1 2.8920 5.8709 6.8224 29 1 2.2808 1.2984 2.5061 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729018409.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:32 Heat of formation + Delta-G solvation = -120.877481 kcal Electronic energy + Delta-G solvation = -20117.758939 eV Core-core repulsion = 16566.219062 eV Total energy + Delta-G solvation = -3551.539877 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.955 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.54337 -40.01270 -38.16369 -37.45107 -36.99545 -34.57647 -33.71434 -32.78018 -30.79456 -30.17054 -27.92662 -25.23909 -24.11931 -22.36815 -20.30310 -19.93834 -19.30200 -18.16796 -17.21735 -17.12039 -16.96975 -16.83039 -16.82163 -16.20565 -15.77208 -15.25643 -14.60574 -14.56915 -14.18374 -13.98556 -13.89757 -13.49500 -13.27120 -13.19201 -13.14867 -12.90546 -12.48180 -12.41952 -12.24419 -12.18427 -12.00875 -11.86979 -11.69232 -10.87065 -10.40900 -10.25650 -10.17770 -8.59566 -6.43157 -0.96885 -0.75293 -0.32815 0.39246 1.27765 1.32170 1.47019 1.54321 1.82624 2.13567 2.22209 2.26128 2.90289 2.98341 3.09775 3.42734 3.74797 3.89799 4.02709 4.15762 4.21936 4.33906 4.50746 4.60988 4.68945 4.85964 5.02495 5.36750 5.43520 5.83003 6.43361 6.75783 7.48257 8.52607 Molecular weight = 347.95amu Principal moments of inertia in cm(-1) A = 0.008281 B = 0.006846 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.398755 B = 4089.036015 C = 7255.335917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.622 4.622 2 S 2.507 3.493 3 O -0.978 6.978 4 O -0.955 6.955 5 C -0.657 4.657 6 C 0.017 3.983 7 C -0.108 4.108 8 C -0.015 4.015 9 Br -0.014 7.014 10 C -0.121 4.121 11 C 0.432 3.568 12 O -0.529 6.529 13 O -0.249 6.249 14 C -0.401 4.401 15 H 0.064 0.936 16 C 0.022 3.978 17 N -0.909 5.909 18 Si 0.965 3.035 19 H -0.249 1.249 20 H -0.263 1.263 21 H -0.251 1.251 22 C 0.015 3.985 23 H 0.146 0.854 24 H 0.160 0.840 25 H 0.166 0.834 26 H 0.200 0.800 27 H 0.186 0.814 28 H 0.291 0.709 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.853 -16.890 -16.585 24.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.776 4.776 2 S 2.687 3.313 3 O -0.976 6.976 4 O -0.952 6.952 5 C -0.741 4.741 6 C -0.002 4.002 7 C -0.129 4.129 8 C -0.096 4.096 9 Br 0.074 6.926 10 C -0.125 4.125 11 C 0.279 3.721 12 O -0.424 6.424 13 O -0.158 6.158 14 C -0.476 4.476 15 H 0.082 0.918 16 C -0.179 4.179 17 N -0.548 5.548 18 Si 0.784 3.216 19 H -0.173 1.173 20 H -0.188 1.188 21 H -0.175 1.175 22 C -0.005 4.005 23 H 0.164 0.836 24 H 0.178 0.822 25 H 0.185 0.815 26 H 0.217 0.783 27 H 0.204 0.796 28 H 0.101 0.899 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.964 -16.805 -16.124 24.308 hybrid contribution -0.146 0.715 1.033 1.265 sum -7.111 -16.090 -15.091 23.177 Atomic orbital electron populations 1.30044 1.18367 1.15005 1.14223 1.05153 0.80496 0.73159 0.72460 1.93587 1.79992 1.38218 1.85765 1.93552 1.79709 1.61787 1.60177 1.31085 1.17707 1.03306 1.21993 1.21694 0.87710 0.92959 0.97869 1.21653 0.99486 1.01405 0.90311 1.22582 0.98711 0.93407 0.94853 1.96801 1.90482 1.82759 1.22590 1.19079 1.08227 0.91914 0.93313 1.21282 0.79339 0.82510 0.88921 1.90838 1.46968 1.76829 1.27725 1.83517 1.75601 1.17469 1.39255 1.20361 1.50163 0.88992 0.88115 0.91764 1.25475 0.94887 0.94554 1.02954 1.69671 1.46795 1.06646 1.31699 0.85343 0.80308 0.78216 0.77759 1.17327 1.18778 1.17458 1.21260 0.88737 1.00936 0.89578 0.83597 0.82171 0.81542 0.78301 0.79649 0.89885 0.83238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -3.41 10.80 113.37 1.22 -2.19 15 2 S 2.51 42.05 5.80 -56.49 -0.33 41.72 15 3 O -0.98 -26.76 17.12 -127.65 -2.19 -28.94 15 4 O -0.95 -18.95 17.11 -127.65 -2.18 -21.13 15 5 C -0.66 -13.97 5.65 22.23 0.13 -13.85 15 6 C 0.02 0.27 9.46 22.33 0.21 0.49 15 7 C -0.11 -2.13 9.78 22.25 0.22 -1.92 15 8 C -0.01 -0.45 6.26 22.60 0.14 -0.30 15 9 Br -0.01 -0.46 30.40 -20.37 -0.62 -1.08 15 10 C -0.12 -4.53 5.88 -20.08 -0.12 -4.65 15 11 C 0.43 21.40 7.82 70.29 0.55 21.95 15 12 O -0.53 -28.50 12.72 19.78 0.25 -28.25 15 13 O -0.25 -13.53 7.82 11.24 0.09 -13.45 15 14 C -0.40 -24.73 10.11 67.96 0.69 -24.04 15 15 H 0.06 4.47 7.09 -2.91 -0.02 4.45 15 16 C 0.02 1.30 5.50 84.89 0.47 1.77 15 17 N -0.91 -54.82 13.96 21.64 0.30 -54.52 15 18 Si 0.96 43.65 28.62 68.60 1.96 45.61 15 19 H -0.25 -10.36 7.11 99.48 0.71 -9.66 15 20 H -0.26 -11.17 7.11 99.48 0.71 -10.46 15 21 H -0.25 -11.21 7.11 99.48 0.71 -10.50 15 22 C 0.01 0.45 9.03 22.54 0.20 0.66 15 23 H 0.15 0.75 8.14 -2.39 -0.02 0.73 15 24 H 0.16 0.23 8.14 -2.39 -0.02 0.21 15 25 H 0.17 -0.06 8.14 -2.39 -0.02 -0.08 15 26 H 0.20 1.46 7.56 -2.91 -0.02 1.44 15 27 H 0.19 2.23 8.06 -2.91 -0.02 2.21 15 28 H 0.29 15.81 8.31 -92.71 -0.77 15.04 15 29 H 0.15 4.91 7.12 -2.91 -0.02 4.89 15 Total: -1.00 -86.05 297.72 2.20 -83.85 By element: Atomic # 1 Polarization: -2.94 SS G_CDS: 1.21 Total: -1.73 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 3.71 Total: -22.08 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.30 Total: -54.52 kcal Atomic # 8 Polarization: -87.74 SS G_CDS: -4.03 Total: -91.77 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.96 Total: 45.61 kcal Atomic # 16 Polarization: 42.05 SS G_CDS: -0.33 Total: 41.72 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -0.62 Total: -1.08 kcal Total: -86.05 2.20 -83.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729018409.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.029 kcal (2) G-P(sol) polarization free energy of solvation -86.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds