Wall clock time and date at job start Wed Apr 1 2020 05:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42102 * 110.54274 * 2 1 4 4 O 1.42098 * 110.54050 * 223.24585 * 2 1 3 5 5 N 1.65603 * 104.44969 * 111.62221 * 2 1 3 6 6 C 1.39156 * 119.99827 * 65.00221 * 5 2 1 7 7 C 1.38178 * 123.52823 * 34.96992 * 6 5 2 8 8 C 1.33550 * 115.09626 * 180.02562 * 7 6 5 9 9 S 1.70558 * 111.23236 * 0.02562 * 8 7 6 10 10 C 1.37632 * 123.52189 * 215.00250 * 6 5 2 11 11 C 1.41253 * 125.49038 * 359.97341 * 10 6 5 12 12 O 1.21732 * 120.00487 * 359.97438 * 11 10 6 13 13 O 1.35000 * 120.00104 * 179.97438 * 11 10 6 14 14 C 1.42898 * 117.00117 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.47132 * 179.97438 * 14 13 11 16 16 O 1.21288 * 119.99969 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00205 * 180.02562 * 15 14 13 18 18 C 1.37092 * 120.00397 * 180.02562 * 17 15 14 19 19 H 1.08009 * 120.00023 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00339 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99980 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47455 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46984 * 120.00079 * 22 20 18 25 25 H 1.48501 * 109.47350 * 240.00124 * 22 20 18 26 26 H 1.09000 * 109.47144 * 308.37721 * 1 2 3 27 27 H 1.09002 * 109.47337 * 68.37447 * 1 2 3 28 28 H 1.08999 * 109.47104 * 188.38261 * 1 2 3 29 29 H 0.96999 * 119.99825 * 245.00080 * 5 2 1 30 30 H 1.07998 * 122.45127 * 0.04832 * 7 6 5 31 31 H 1.07992 * 124.38035 * 180.26694 * 8 7 6 32 32 H 1.08994 * 109.47620 * 299.99815 * 14 13 11 33 33 H 1.09007 * 109.47079 * 60.00547 * 14 13 11 34 34 H 0.97005 * 120.00024 * 359.97438 * 17 15 14 35 35 H 0.97003 * 119.99584 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9693 -0.9117 5 7 2.2272 -0.5909 1.4908 6 6 1.9077 -1.9014 1.8328 7 6 1.9147 -2.9488 0.9315 8 6 1.5798 -4.1369 1.4412 9 16 1.2286 -4.0181 3.1060 10 6 1.5509 -2.2898 3.1041 11 6 1.4581 -1.4370 4.2263 12 8 1.7049 -0.2505 4.1114 13 8 1.0958 -1.9379 5.4265 14 6 1.0230 -1.0184 6.5180 15 6 0.6057 -1.7525 7.7662 16 8 0.3922 -2.9457 7.7253 17 7 0.4698 -1.0831 8.9281 18 6 0.0907 -1.7509 10.0637 19 1 -0.0995 -2.8135 10.0273 20 6 -0.0490 -1.0609 11.2617 21 7 0.1829 0.2318 11.3061 22 14 -0.5662 -1.9708 12.8089 23 1 -0.7640 -3.4087 12.4948 24 1 0.4914 -1.8313 13.8421 25 1 -1.8365 -1.3960 13.3200 26 1 -0.3633 0.6380 0.8056 27 1 -0.3634 0.3787 -0.9553 28 1 -0.3633 -1.0167 0.1498 29 1 2.6920 -0.0236 2.1256 30 1 2.1726 -2.8163 -0.1088 31 1 1.5406 -5.0548 0.8736 32 1 2.0002 -0.5617 6.6742 33 1 0.2914 -0.2427 6.2914 34 1 0.6409 -0.1288 8.9609 35 1 0.0857 0.7135 12.1425 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731244029.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:03 Heat of formation + Delta-G solvation = -146.462958 kcal Electronic energy + Delta-G solvation = -25369.523443 eV Core-core repulsion = 21201.471334 eV Total energy + Delta-G solvation = -4168.052108 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.71345 -39.17266 -38.07114 -37.47813 -36.44231 -36.14408 -34.06905 -34.00876 -31.42403 -30.59205 -29.92041 -28.18739 -25.27040 -24.46155 -22.32150 -20.77633 -19.70883 -19.48921 -18.85448 -18.16485 -18.10918 -17.21434 -16.79945 -16.51489 -16.33820 -15.96989 -15.61349 -15.05867 -14.67530 -14.44683 -14.31275 -13.96438 -13.81852 -13.67910 -13.45740 -13.30314 -13.04569 -12.59196 -12.54927 -12.37238 -12.15103 -12.00993 -11.64749 -11.60407 -11.21185 -11.17469 -11.02551 -10.62776 -10.44171 -10.41031 -10.32350 -9.64060 -9.22568 -8.55167 -8.47832 -8.10822 -6.52409 -3.94422 -0.35626 0.10992 1.15941 1.61592 1.87683 2.18674 2.72157 2.77012 3.09903 3.22377 3.29290 3.29817 3.70939 3.71648 4.09923 4.21807 4.39311 4.55000 4.70498 4.78059 4.99285 5.12438 5.12711 5.25888 5.45036 5.57840 5.65933 5.73970 5.85910 6.01832 6.41545 6.62951 7.45711 7.71549 7.92504 8.45757 9.04728 9.36816 9.86366 10.64849 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.021233 B = 0.002376 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.402166 B =11782.592771 C =12822.401184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.667 4.667 2 S 2.608 3.392 3 O -0.945 6.945 4 O -0.948 6.948 5 N -1.028 6.028 6 C 0.230 3.770 7 C -0.199 4.199 8 C -0.210 4.210 9 S 0.307 5.693 10 C -0.308 4.308 11 C 0.540 3.460 12 O -0.512 6.512 13 O -0.319 6.319 14 C 0.061 3.939 15 C 0.439 3.561 16 O -0.576 6.576 17 N -0.552 5.552 18 C -0.302 4.302 19 H 0.107 0.893 20 C 0.025 3.975 21 N -0.897 5.897 22 Si 0.933 3.067 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.135 0.865 27 H 0.134 0.866 28 H 0.132 0.868 29 H 0.439 0.561 30 H 0.181 0.819 31 H 0.180 0.820 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.395 0.605 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.963 -3.247 -23.162 23.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.818 4.818 2 S 2.702 3.298 3 O -0.935 6.935 4 O -0.938 6.938 5 N -0.779 5.779 6 C 0.115 3.885 7 C -0.233 4.233 8 C -0.349 4.349 9 S 0.574 5.426 10 C -0.431 4.431 11 C 0.387 3.613 12 O -0.405 6.405 13 O -0.233 6.233 14 C -0.017 4.017 15 C 0.223 3.777 16 O -0.460 6.460 17 N -0.189 5.189 18 C -0.431 4.431 19 H 0.125 0.875 20 C -0.178 4.178 21 N -0.537 5.537 22 Si 0.760 3.240 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.154 0.846 27 H 0.152 0.848 28 H 0.150 0.850 29 H 0.280 0.720 30 H 0.198 0.802 31 H 0.197 0.803 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.229 0.771 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.960 -4.384 -22.712 23.152 hybrid contribution -0.080 1.625 0.403 1.676 sum 0.880 -2.760 -22.309 22.497 Atomic orbital electron populations 1.30467 1.26900 1.12345 1.12117 1.05126 0.78118 0.73966 0.72607 1.93659 1.78111 1.36828 1.84922 1.93572 1.77392 1.61156 1.61645 1.53250 1.69370 1.17600 1.37704 1.16696 0.95303 0.85038 0.91496 1.20477 1.08503 0.90653 1.03639 1.25497 1.04419 1.02857 1.02145 1.83882 1.59238 0.98538 1.00900 1.22392 1.23412 1.00893 0.96436 1.18181 0.74305 0.86147 0.82671 1.90828 1.47673 1.16509 1.85462 1.86226 1.78923 1.41318 1.16831 1.22399 1.03073 0.91414 0.84862 1.19289 0.86170 0.88213 0.83986 1.90559 1.55554 1.14691 1.85160 1.41710 1.59385 1.11115 1.06724 1.19774 1.42892 0.95303 0.85123 0.87540 1.25319 0.97184 0.95700 0.99579 1.69624 1.48538 1.07249 1.28298 0.85744 0.78125 0.79631 0.80515 1.19075 1.20613 1.20619 0.84628 0.84764 0.84956 0.71987 0.80212 0.80274 0.89618 0.89665 0.77148 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -3.60 10.84 101.05 1.10 -2.51 16 2 S 2.61 22.25 5.97 -107.50 -0.64 21.61 16 3 O -0.94 -11.27 18.08 -57.54 -1.04 -12.31 16 4 O -0.95 -9.64 15.12 -57.54 -0.87 -10.51 16 5 N -1.03 -10.35 5.23 31.92 0.17 -10.18 16 6 C 0.23 2.45 6.29 -84.78 -0.53 1.92 16 7 C -0.20 -1.75 9.30 -41.24 -0.38 -2.14 16 8 C -0.21 -1.55 10.89 29.09 0.32 -1.23 16 9 S 0.31 3.07 22.81 -107.50 -2.45 0.62 16 10 C -0.31 -3.86 6.28 -38.66 -0.24 -4.11 16 11 C 0.54 8.40 7.71 31.88 0.25 8.64 16 12 O -0.51 -8.25 14.62 -19.45 -0.28 -8.53 16 13 O -0.32 -5.75 9.40 -48.08 -0.45 -6.21 16 14 C 0.06 1.12 5.86 36.01 0.21 1.33 16 15 C 0.44 10.34 7.86 -10.98 -0.09 10.25 16 16 O -0.58 -15.56 16.07 -14.36 -0.23 -15.80 16 17 N -0.55 -13.72 5.29 -10.96 -0.06 -13.78 16 18 C -0.30 -8.20 9.68 -14.94 -0.14 -8.34 16 19 H 0.11 3.02 7.16 -52.48 -0.38 2.65 16 20 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 21 N -0.90 -23.80 13.05 55.50 0.72 -23.07 16 22 Si 0.93 20.43 29.55 -169.99 -5.02 15.41 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H 0.14 0.71 8.14 -51.92 -0.42 0.28 16 27 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.13 0.59 8.14 -51.92 -0.42 0.16 16 29 H 0.44 4.68 7.30 -34.47 -0.25 4.42 16 30 H 0.18 1.50 5.65 -52.49 -0.30 1.20 16 31 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.09 1.45 8.13 -51.93 -0.42 1.03 16 33 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 34 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 35 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 LS Contribution 341.77 15.07 5.15 5.15 Total: -1.00 -35.82 341.77 -7.54 -43.37 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -2.92 Total: 9.87 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 0.38 Total: 4.37 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.83 Total: -47.03 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -2.88 Total: -53.36 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 25.32 SS G_CDS: -3.09 Total: 22.23 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.82 -7.54 -43.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244029.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.096 kcal (2) G-P(sol) polarization free energy of solvation -35.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds