Wall clock time and date at job start Wed Apr 1 2020 05:32:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81401 * 1
3 3 O 1.42102 * 110.54274 * 2 1
4 4 O 1.42098 * 110.54050 * 223.24585 * 2 1 3
5 5 N 1.65603 * 104.44969 * 111.62221 * 2 1 3
6 6 C 1.39156 * 119.99827 * 65.00221 * 5 2 1
7 7 C 1.38178 * 123.52823 * 34.96992 * 6 5 2
8 8 C 1.33550 * 115.09626 * 180.02562 * 7 6 5
9 9 S 1.70558 * 111.23236 * 0.02562 * 8 7 6
10 10 C 1.37632 * 123.52189 * 215.00250 * 6 5 2
11 11 C 1.41253 * 125.49038 * 359.97341 * 10 6 5
12 12 O 1.21732 * 120.00487 * 359.97438 * 11 10 6
13 13 O 1.35000 * 120.00104 * 179.97438 * 11 10 6
14 14 C 1.42898 * 117.00117 * 179.97438 * 13 11 10
15 15 C 1.50705 * 109.47132 * 179.97438 * 14 13 11
16 16 O 1.21288 * 119.99969 * 0.02562 * 15 14 13
17 17 N 1.34773 * 120.00205 * 180.02562 * 15 14 13
18 18 C 1.37092 * 120.00397 * 180.02562 * 17 15 14
19 19 H 1.08009 * 120.00023 * 359.97438 * 18 17 15
20 20 C 1.38951 * 120.00339 * 179.97438 * 18 17 15
21 21 N 1.31412 * 119.99773 * 359.97438 * 20 18 17
22 22 Si 1.86797 * 119.99980 * 179.97438 * 20 18 17
23 23 H 1.48503 * 109.47455 * 0.02562 * 22 20 18
24 24 H 1.48506 * 109.46984 * 120.00079 * 22 20 18
25 25 H 1.48501 * 109.47350 * 240.00124 * 22 20 18
26 26 H 1.09000 * 109.47144 * 308.37721 * 1 2 3
27 27 H 1.09002 * 109.47337 * 68.37447 * 1 2 3
28 28 H 1.08999 * 109.47104 * 188.38261 * 1 2 3
29 29 H 0.96999 * 119.99825 * 245.00080 * 5 2 1
30 30 H 1.07998 * 122.45127 * 0.04832 * 7 6 5
31 31 H 1.07992 * 124.38035 * 180.26694 * 8 7 6
32 32 H 1.08994 * 109.47620 * 299.99815 * 14 13 11
33 33 H 1.09007 * 109.47079 * 60.00547 * 14 13 11
34 34 H 0.97005 * 120.00024 * 359.97438 * 17 15 14
35 35 H 0.97003 * 119.99584 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 8 2.3127 1.3307 0.0000
4 8 2.3126 -0.9693 -0.9117
5 7 2.2272 -0.5909 1.4908
6 6 1.9077 -1.9014 1.8328
7 6 1.9147 -2.9488 0.9315
8 6 1.5798 -4.1369 1.4412
9 16 1.2286 -4.0181 3.1060
10 6 1.5509 -2.2898 3.1041
11 6 1.4581 -1.4370 4.2263
12 8 1.7049 -0.2505 4.1114
13 8 1.0958 -1.9379 5.4265
14 6 1.0230 -1.0184 6.5180
15 6 0.6057 -1.7525 7.7662
16 8 0.3922 -2.9457 7.7253
17 7 0.4698 -1.0831 8.9281
18 6 0.0907 -1.7509 10.0637
19 1 -0.0995 -2.8135 10.0273
20 6 -0.0490 -1.0609 11.2617
21 7 0.1829 0.2318 11.3061
22 14 -0.5662 -1.9708 12.8089
23 1 -0.7640 -3.4087 12.4948
24 1 0.4914 -1.8313 13.8421
25 1 -1.8365 -1.3960 13.3200
26 1 -0.3633 0.6380 0.8056
27 1 -0.3634 0.3787 -0.9553
28 1 -0.3633 -1.0167 0.1498
29 1 2.6920 -0.0236 2.1256
30 1 2.1726 -2.8163 -0.1088
31 1 1.5406 -5.0548 0.8736
32 1 2.0002 -0.5617 6.6742
33 1 0.2914 -0.2427 6.2914
34 1 0.6409 -0.1288 8.9609
35 1 0.0857 0.7135 12.1425
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000731244029.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:32:03
Heat of formation + Delta-G solvation = -174.166875 kcal
Electronic energy + Delta-G solvation = -25370.724775 eV
Core-core repulsion = 21201.471334 eV
Total energy + Delta-G solvation = -4169.253440 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 348.037 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-41.90094 -40.33907 -39.65034 -38.28881 -37.44753 -37.20260 -36.02635 -34.80367
-33.41721 -31.62706 -30.40618 -29.65714 -26.74937 -25.72043 -23.36925 -21.55798
-21.44659 -20.43742 -20.08669 -19.78875 -18.97046 -18.35494 -17.88893 -17.68051
-17.39301 -17.17003 -16.73781 -16.45679 -15.99687 -15.84088 -15.58526 -15.26926
-14.67874 -14.63102 -14.23732 -14.08406 -13.99123 -13.84160 -13.63279 -13.56378
-13.38958 -13.33548 -12.94470 -12.85202 -12.46069 -12.30504 -12.10531 -11.96043
-11.85160 -11.76818 -11.72764 -11.57815 -10.50331 -10.11534 -10.03691 -9.25535
-8.52314 -6.02698 -1.05394 -0.68237 0.37065 0.89268 1.07335 1.34849
1.38749 1.46242 1.48181 1.60239 1.72439 1.87471 2.30646 2.65067
3.05854 3.09004 3.13487 3.56539 3.81338 3.94792 3.99189 4.07275
4.12029 4.15331 4.22056 4.44570 4.84257 4.86632 4.96447 5.11059
5.26533 5.37611 5.71638 5.89213 6.43823 6.56642 7.03236 7.40198
7.93326 8.64977
Molecular weight = 348.04amu
Principal moments of inertia in cm(-1)
A = 0.021233 B = 0.002376 C = 0.002183
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1318.402166 B =11782.592771 C =12822.401184
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.651 4.651
2 S 2.615 3.385
3 O -0.983 6.983
4 O -0.966 6.966
5 N -1.035 6.035
6 C 0.247 3.753
7 C -0.212 4.212
8 C -0.168 4.168
9 S 0.294 5.706
10 C -0.350 4.350
11 C 0.540 3.460
12 O -0.528 6.528
13 O -0.337 6.337
14 C 0.072 3.928
15 C 0.438 3.562
16 O -0.615 6.615
17 N -0.558 5.558
18 C -0.336 4.336
19 H 0.085 0.915
20 C -0.010 4.010
21 N -0.916 5.916
22 Si 0.998 3.002
23 H -0.270 1.270
24 H -0.270 1.270
25 H -0.270 1.270
26 H 0.141 0.859
27 H 0.162 0.838
28 H 0.149 0.851
29 H 0.435 0.565
30 H 0.191 0.809
31 H 0.221 0.779
32 H 0.103 0.897
33 H 0.105 0.895
34 H 0.400 0.600
35 H 0.280 0.720
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.241 -3.936 -24.474 24.790
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.805 4.805
2 S 2.712 3.288
3 O -0.974 6.974
4 O -0.956 6.956
5 N -0.783 5.783
6 C 0.130 3.870
7 C -0.244 4.244
8 C -0.307 4.307
9 S 0.562 5.438
10 C -0.473 4.473
11 C 0.389 3.611
12 O -0.421 6.421
13 O -0.253 6.253
14 C -0.005 4.005
15 C 0.225 3.775
16 O -0.501 6.501
17 N -0.196 5.196
18 C -0.465 4.465
19 H 0.103 0.897
20 C -0.210 4.210
21 N -0.556 5.556
22 Si 0.821 3.179
23 H -0.194 1.194
24 H -0.196 1.196
25 H -0.195 1.195
26 H 0.160 0.840
27 H 0.180 0.820
28 H 0.167 0.833
29 H 0.275 0.725
30 H 0.207 0.793
31 H 0.237 0.763
32 H 0.121 0.879
33 H 0.123 0.877
34 H 0.234 0.766
35 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 0.284 -5.040 -24.043 24.567
hybrid contribution 0.131 1.807 0.648 1.924
sum 0.414 -3.234 -23.394 23.620
Atomic orbital electron populations
1.30335 1.22192 1.13893 1.14064 1.04859 0.79609 0.72673 0.71676
1.93610 1.80011 1.38568 1.85241 1.93536 1.78966 1.61192 1.61899
1.53378 1.69489 1.17651 1.37793 1.16963 0.93377 0.85505 0.91160
1.20585 1.09615 0.90497 1.03751 1.25931 1.00402 1.03808 1.00524
1.83972 1.59746 0.97069 1.03061 1.22285 1.27024 1.01992 0.95992
1.18543 0.73729 0.86546 0.82283 1.90808 1.48735 1.17117 1.85460
1.86215 1.79813 1.41665 1.17579 1.22135 1.04318 0.90874 0.83219
1.20066 0.84543 0.87912 0.85017 1.90522 1.56941 1.16613 1.86048
1.41748 1.59657 1.11292 1.06886 1.19757 1.45140 0.94836 0.86742
0.89683 1.26128 0.96448 0.96489 1.01951 1.69682 1.48361 1.08167
1.29415 0.84802 0.78236 0.78151 0.76734 1.19448 1.19561 1.19473
0.84040 0.81971 0.83277 0.72548 0.79260 0.76254 0.87937 0.87718
0.76610 0.91004
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.65 -5.21 10.84 113.37 1.23 -3.98 16
2 S 2.61 41.85 5.97 -56.49 -0.34 41.51 16
3 O -0.98 -23.42 18.08 -127.65 -2.31 -25.73 16
4 O -0.97 -18.29 15.12 -127.65 -1.93 -20.22 16
5 N -1.03 -20.24 5.23 -52.92 -0.28 -20.52 16
6 C 0.25 4.96 6.29 37.82 0.24 5.20 16
7 C -0.21 -3.19 9.30 21.19 0.20 -2.99 16
8 C -0.17 -1.93 10.89 66.76 0.73 -1.20 16
9 S 0.29 5.52 22.81 -56.49 -1.29 4.23 16
10 C -0.35 -8.59 6.28 22.87 0.14 -8.45 16
11 C 0.54 16.85 7.71 68.56 0.53 17.38 16
12 O -0.53 -17.06 14.62 19.08 0.28 -16.79 16
13 O -0.34 -12.34 9.40 -52.72 -0.50 -12.83 16
14 C 0.07 2.70 5.86 71.24 0.42 3.12 16
15 C 0.44 21.12 7.86 87.66 0.69 21.81 16
16 O -0.61 -34.28 16.07 15.98 0.26 -34.02 16
17 N -0.56 -28.38 5.29 -306.98 -1.62 -30.00 16
18 C -0.34 -18.65 9.68 84.04 0.81 -17.84 16
19 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16
20 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16
21 N -0.92 -48.39 13.05 21.66 0.28 -48.11 16
22 Si 1.00 41.66 29.55 68.60 2.03 43.68 16
23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16
24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16
25 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16
26 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16
27 H 0.16 0.48 8.14 -2.39 -0.02 0.46 16
28 H 0.15 0.80 8.14 -2.39 -0.02 0.78 16
29 H 0.43 9.41 7.30 -96.75 -0.71 8.70 16
30 H 0.19 2.61 5.65 -2.91 -0.02 2.60 16
31 H 0.22 0.70 8.06 -2.91 -0.02 0.68 16
32 H 0.10 3.46 8.13 -2.39 -0.02 3.44 16
33 H 0.10 3.48 8.13 -2.38 -0.02 3.46 16
34 H 0.40 19.19 7.90 -92.70 -0.73 18.46 16
35 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16
Total: -1.00 -78.70 341.77 -0.21 -78.91
By element:
Atomic # 1 Polarization: 27.13 SS G_CDS: -0.25 Total: 26.88 kcal
Atomic # 6 Polarization: 7.56 SS G_CDS: 5.45 Total: 13.01 kcal
Atomic # 7 Polarization: -97.01 SS G_CDS: -1.62 Total: -98.63 kcal
Atomic # 8 Polarization: -105.39 SS G_CDS: -4.20 Total: -109.58 kcal
Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal
Atomic # 16 Polarization: 47.36 SS G_CDS: -1.63 Total: 45.74 kcal
Total: -78.70 -0.21 -78.91 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000731244029.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -95.259 kcal
(2) G-P(sol) polarization free energy of solvation -78.699 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.958 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.209 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.908 kcal
(6) G-S(sol) free energy of system = (1) + (5) -174.167 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds