Wall clock time and date at job start Wed Apr 1 2020 05:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42102 * 110.54274 * 2 1 4 4 O 1.42098 * 110.54050 * 223.24585 * 2 1 3 5 5 N 1.65603 * 104.44969 * 111.62221 * 2 1 3 6 6 C 1.39156 * 119.99827 * 65.00221 * 5 2 1 7 7 C 1.38178 * 123.52823 * 34.96992 * 6 5 2 8 8 C 1.33550 * 115.09626 * 180.02562 * 7 6 5 9 9 S 1.70558 * 111.23236 * 0.02562 * 8 7 6 10 10 C 1.37632 * 123.52189 * 215.00250 * 6 5 2 11 11 C 1.41253 * 125.49038 * 359.97341 * 10 6 5 12 12 O 1.21732 * 120.00487 * 359.97438 * 11 10 6 13 13 O 1.35000 * 120.00104 * 179.97438 * 11 10 6 14 14 C 1.42898 * 117.00117 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.47132 * 179.97438 * 14 13 11 16 16 O 1.21288 * 119.99969 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00205 * 180.02562 * 15 14 13 18 18 C 1.37092 * 120.00397 * 180.02562 * 17 15 14 19 19 H 1.08009 * 120.00023 * 359.97438 * 18 17 15 20 20 C 1.38951 * 120.00339 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99980 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47455 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46984 * 120.00079 * 22 20 18 25 25 H 1.48501 * 109.47350 * 240.00124 * 22 20 18 26 26 H 1.09000 * 109.47144 * 308.37721 * 1 2 3 27 27 H 1.09002 * 109.47337 * 68.37447 * 1 2 3 28 28 H 1.08999 * 109.47104 * 188.38261 * 1 2 3 29 29 H 0.96999 * 119.99825 * 245.00080 * 5 2 1 30 30 H 1.07998 * 122.45127 * 0.04832 * 7 6 5 31 31 H 1.07992 * 124.38035 * 180.26694 * 8 7 6 32 32 H 1.08994 * 109.47620 * 299.99815 * 14 13 11 33 33 H 1.09007 * 109.47079 * 60.00547 * 14 13 11 34 34 H 0.97005 * 120.00024 * 359.97438 * 17 15 14 35 35 H 0.97003 * 119.99584 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9693 -0.9117 5 7 2.2272 -0.5909 1.4908 6 6 1.9077 -1.9014 1.8328 7 6 1.9147 -2.9488 0.9315 8 6 1.5798 -4.1369 1.4412 9 16 1.2286 -4.0181 3.1060 10 6 1.5509 -2.2898 3.1041 11 6 1.4581 -1.4370 4.2263 12 8 1.7049 -0.2505 4.1114 13 8 1.0958 -1.9379 5.4265 14 6 1.0230 -1.0184 6.5180 15 6 0.6057 -1.7525 7.7662 16 8 0.3922 -2.9457 7.7253 17 7 0.4698 -1.0831 8.9281 18 6 0.0907 -1.7509 10.0637 19 1 -0.0995 -2.8135 10.0273 20 6 -0.0490 -1.0609 11.2617 21 7 0.1829 0.2318 11.3061 22 14 -0.5662 -1.9708 12.8089 23 1 -0.7640 -3.4087 12.4948 24 1 0.4914 -1.8313 13.8421 25 1 -1.8365 -1.3960 13.3200 26 1 -0.3633 0.6380 0.8056 27 1 -0.3634 0.3787 -0.9553 28 1 -0.3633 -1.0167 0.1498 29 1 2.6920 -0.0236 2.1256 30 1 2.1726 -2.8163 -0.1088 31 1 1.5406 -5.0548 0.8736 32 1 2.0002 -0.5617 6.6742 33 1 0.2914 -0.2427 6.2914 34 1 0.6409 -0.1288 8.9609 35 1 0.0857 0.7135 12.1425 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731244029.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:03 Heat of formation + Delta-G solvation = -174.166875 kcal Electronic energy + Delta-G solvation = -25370.724775 eV Core-core repulsion = 21201.471334 eV Total energy + Delta-G solvation = -4169.253440 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.90094 -40.33907 -39.65034 -38.28881 -37.44753 -37.20260 -36.02635 -34.80367 -33.41721 -31.62706 -30.40618 -29.65714 -26.74937 -25.72043 -23.36925 -21.55798 -21.44659 -20.43742 -20.08669 -19.78875 -18.97046 -18.35494 -17.88893 -17.68051 -17.39301 -17.17003 -16.73781 -16.45679 -15.99687 -15.84088 -15.58526 -15.26926 -14.67874 -14.63102 -14.23732 -14.08406 -13.99123 -13.84160 -13.63279 -13.56378 -13.38958 -13.33548 -12.94470 -12.85202 -12.46069 -12.30504 -12.10531 -11.96043 -11.85160 -11.76818 -11.72764 -11.57815 -10.50331 -10.11534 -10.03691 -9.25535 -8.52314 -6.02698 -1.05394 -0.68237 0.37065 0.89268 1.07335 1.34849 1.38749 1.46242 1.48181 1.60239 1.72439 1.87471 2.30646 2.65067 3.05854 3.09004 3.13487 3.56539 3.81338 3.94792 3.99189 4.07275 4.12029 4.15331 4.22056 4.44570 4.84257 4.86632 4.96447 5.11059 5.26533 5.37611 5.71638 5.89213 6.43823 6.56642 7.03236 7.40198 7.93326 8.64977 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.021233 B = 0.002376 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.402166 B =11782.592771 C =12822.401184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.615 3.385 3 O -0.983 6.983 4 O -0.966 6.966 5 N -1.035 6.035 6 C 0.247 3.753 7 C -0.212 4.212 8 C -0.168 4.168 9 S 0.294 5.706 10 C -0.350 4.350 11 C 0.540 3.460 12 O -0.528 6.528 13 O -0.337 6.337 14 C 0.072 3.928 15 C 0.438 3.562 16 O -0.615 6.615 17 N -0.558 5.558 18 C -0.336 4.336 19 H 0.085 0.915 20 C -0.010 4.010 21 N -0.916 5.916 22 Si 0.998 3.002 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.270 1.270 26 H 0.141 0.859 27 H 0.162 0.838 28 H 0.149 0.851 29 H 0.435 0.565 30 H 0.191 0.809 31 H 0.221 0.779 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.400 0.600 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.241 -3.936 -24.474 24.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.712 3.288 3 O -0.974 6.974 4 O -0.956 6.956 5 N -0.783 5.783 6 C 0.130 3.870 7 C -0.244 4.244 8 C -0.307 4.307 9 S 0.562 5.438 10 C -0.473 4.473 11 C 0.389 3.611 12 O -0.421 6.421 13 O -0.253 6.253 14 C -0.005 4.005 15 C 0.225 3.775 16 O -0.501 6.501 17 N -0.196 5.196 18 C -0.465 4.465 19 H 0.103 0.897 20 C -0.210 4.210 21 N -0.556 5.556 22 Si 0.821 3.179 23 H -0.194 1.194 24 H -0.196 1.196 25 H -0.195 1.195 26 H 0.160 0.840 27 H 0.180 0.820 28 H 0.167 0.833 29 H 0.275 0.725 30 H 0.207 0.793 31 H 0.237 0.763 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.234 0.766 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.284 -5.040 -24.043 24.567 hybrid contribution 0.131 1.807 0.648 1.924 sum 0.414 -3.234 -23.394 23.620 Atomic orbital electron populations 1.30335 1.22192 1.13893 1.14064 1.04859 0.79609 0.72673 0.71676 1.93610 1.80011 1.38568 1.85241 1.93536 1.78966 1.61192 1.61899 1.53378 1.69489 1.17651 1.37793 1.16963 0.93377 0.85505 0.91160 1.20585 1.09615 0.90497 1.03751 1.25931 1.00402 1.03808 1.00524 1.83972 1.59746 0.97069 1.03061 1.22285 1.27024 1.01992 0.95992 1.18543 0.73729 0.86546 0.82283 1.90808 1.48735 1.17117 1.85460 1.86215 1.79813 1.41665 1.17579 1.22135 1.04318 0.90874 0.83219 1.20066 0.84543 0.87912 0.85017 1.90522 1.56941 1.16613 1.86048 1.41748 1.59657 1.11292 1.06886 1.19757 1.45140 0.94836 0.86742 0.89683 1.26128 0.96448 0.96489 1.01951 1.69682 1.48361 1.08167 1.29415 0.84802 0.78236 0.78151 0.76734 1.19448 1.19561 1.19473 0.84040 0.81971 0.83277 0.72548 0.79260 0.76254 0.87937 0.87718 0.76610 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -5.21 10.84 113.37 1.23 -3.98 16 2 S 2.61 41.85 5.97 -56.49 -0.34 41.51 16 3 O -0.98 -23.42 18.08 -127.65 -2.31 -25.73 16 4 O -0.97 -18.29 15.12 -127.65 -1.93 -20.22 16 5 N -1.03 -20.24 5.23 -52.92 -0.28 -20.52 16 6 C 0.25 4.96 6.29 37.82 0.24 5.20 16 7 C -0.21 -3.19 9.30 21.19 0.20 -2.99 16 8 C -0.17 -1.93 10.89 66.76 0.73 -1.20 16 9 S 0.29 5.52 22.81 -56.49 -1.29 4.23 16 10 C -0.35 -8.59 6.28 22.87 0.14 -8.45 16 11 C 0.54 16.85 7.71 68.56 0.53 17.38 16 12 O -0.53 -17.06 14.62 19.08 0.28 -16.79 16 13 O -0.34 -12.34 9.40 -52.72 -0.50 -12.83 16 14 C 0.07 2.70 5.86 71.24 0.42 3.12 16 15 C 0.44 21.12 7.86 87.66 0.69 21.81 16 16 O -0.61 -34.28 16.07 15.98 0.26 -34.02 16 17 N -0.56 -28.38 5.29 -306.98 -1.62 -30.00 16 18 C -0.34 -18.65 9.68 84.04 0.81 -17.84 16 19 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 20 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 21 N -0.92 -48.39 13.05 21.66 0.28 -48.11 16 22 Si 1.00 41.66 29.55 68.60 2.03 43.68 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 26 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.16 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.15 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.43 9.41 7.30 -96.75 -0.71 8.70 16 30 H 0.19 2.61 5.65 -2.91 -0.02 2.60 16 31 H 0.22 0.70 8.06 -2.91 -0.02 0.68 16 32 H 0.10 3.46 8.13 -2.39 -0.02 3.44 16 33 H 0.10 3.48 8.13 -2.38 -0.02 3.46 16 34 H 0.40 19.19 7.90 -92.70 -0.73 18.46 16 35 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -78.70 341.77 -0.21 -78.91 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: -0.25 Total: 26.88 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 5.45 Total: 13.01 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -1.62 Total: -98.63 kcal Atomic # 8 Polarization: -105.39 SS G_CDS: -4.20 Total: -109.58 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 16 Polarization: 47.36 SS G_CDS: -1.63 Total: 45.74 kcal Total: -78.70 -0.21 -78.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244029.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.259 kcal (2) G-P(sol) polarization free energy of solvation -78.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds