Wall clock time and date at job start Wed Apr 1 2020 05:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36003 * 117.00090 * 2 1 4 4 C 1.38053 * 119.98310 * 0.27809 * 3 2 1 5 5 C 1.40029 * 119.84655 * 180.27067 * 4 3 2 6 6 C 1.46863 * 120.09239 * 179.74335 * 5 4 3 7 7 O 1.21293 * 119.99903 * 359.97438 * 6 5 4 8 8 C 1.40016 * 119.80864 * 359.72685 * 5 4 3 9 9 C 1.37765 * 119.96308 * 359.97438 * 8 5 4 10 10 Cl 1.73612 * 119.92275 * 180.02562 * 9 8 5 11 11 C 1.39015 * 120.16120 * 0.02562 * 9 8 5 12 12 O 1.35771 * 119.91018 * 180.02562 * 11 9 8 13 13 S 1.52200 * 114.00080 * 89.99766 * 12 11 9 14 14 O 1.42096 * 104.27696 * 318.93174 * 13 12 11 15 15 O 1.42097 * 104.27816 * 191.07020 * 13 12 11 16 16 C 1.81399 * 104.44943 * 75.00123 * 13 12 11 17 17 C 1.53002 * 109.47162 * 180.02562 * 16 13 12 18 18 C 1.50706 * 109.46925 * 179.97438 * 17 16 13 19 19 H 1.07999 * 120.00196 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99394 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00338 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99424 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47233 * 120.00158 * 22 20 18 25 25 H 1.48508 * 109.46883 * 239.99963 * 22 20 18 26 26 H 1.09002 * 109.47093 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47109 * 299.99911 * 1 2 3 28 28 H 1.08999 * 109.47624 * 59.99730 * 1 2 3 29 29 H 1.08009 * 120.07661 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.99381 * 179.97438 * 6 5 4 31 31 H 1.07999 * 120.01774 * 180.02562 * 8 5 4 32 32 H 1.09004 * 109.47089 * 299.99831 * 16 13 12 33 33 H 1.09004 * 109.47568 * 59.99841 * 16 13 12 34 34 H 1.09000 * 109.46497 * 299.99702 * 17 16 13 35 35 H 1.08996 * 109.46876 * 60.00092 * 17 16 13 36 36 H 0.96996 * 119.99730 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2942 2.3694 0.0058 5 6 1.9329 3.6155 0.0001 6 6 1.1379 4.8504 0.0005 7 8 -0.0736 4.7917 0.0054 8 6 3.3315 3.6808 -0.0058 9 6 4.0745 2.5206 -0.0053 10 17 5.8086 2.6028 -0.0118 11 6 3.4390 1.2843 0.0004 12 8 4.1762 0.1441 0.0014 13 16 4.5169 -0.3716 1.3922 14 8 4.8414 0.7986 2.1301 15 8 5.4859 -1.3852 1.1625 16 6 2.9685 -1.0970 1.9979 17 6 3.1837 -1.6565 3.4056 18 6 1.8971 -2.2585 3.9090 19 1 1.0141 -2.2432 3.2873 20 6 1.8473 -2.8289 5.1633 21 7 2.9224 -2.8470 5.9206 22 14 0.2528 -3.5757 5.7869 23 1 -0.8012 -3.4287 4.7512 24 1 0.4619 -5.0167 6.0785 25 1 -0.1699 -2.8761 7.0268 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.2156 2.3140 0.0099 30 1 1.6322 5.8107 -0.0035 31 1 3.8276 4.6401 -0.0098 32 1 2.1947 -0.3298 2.0267 33 1 2.6583 -1.9010 1.3305 34 1 3.9576 -2.4235 3.3772 35 1 3.4935 -0.8521 4.0728 36 1 2.8872 -3.2479 6.8031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732215861.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:00 Heat of formation + Delta-G solvation = -148.998725 kcal Electronic energy + Delta-G solvation = -26889.547248 eV Core-core repulsion = 22687.048723 eV Total energy + Delta-G solvation = -4202.498525 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.036 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.62802 -39.73652 -39.11769 -37.63256 -36.73484 -36.51341 -35.63696 -33.92906 -31.29271 -31.12602 -30.76267 -27.87180 -25.70365 -25.48867 -23.04691 -22.22388 -21.75297 -20.52152 -18.69543 -18.19293 -17.81002 -17.50590 -16.62202 -16.24796 -16.08556 -15.85760 -15.66649 -15.37544 -14.91947 -14.71249 -14.58937 -14.42869 -13.78256 -13.46591 -13.29761 -13.15329 -12.54539 -12.39261 -12.16428 -12.07118 -11.84576 -11.74084 -11.73592 -11.61882 -11.30193 -11.19008 -11.10035 -10.95431 -10.42027 -10.39390 -10.35243 -9.76259 -9.31974 -9.10885 -8.81152 -8.52788 -6.14555 -4.19917 -0.27284 0.64028 0.71405 1.59717 1.83012 2.34603 2.77444 3.03868 3.22858 3.30050 3.32628 3.63151 4.01212 4.16766 4.31568 4.35297 4.42601 4.50856 4.58013 4.69196 4.92863 5.00284 5.19943 5.20986 5.37160 5.40253 5.50024 5.55375 5.66579 5.75106 5.96637 6.47799 6.75679 6.88835 7.27607 7.33255 7.78413 8.15170 8.83131 9.44562 10.96652 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.004412 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.884586 B = 6345.288924 C = 7882.534125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.296 6.296 3 C 0.126 3.874 4 C -0.135 4.135 5 C -0.133 4.133 6 C 0.389 3.611 7 O -0.449 6.449 8 C -0.085 4.085 9 C 0.006 3.994 10 Cl -0.020 7.020 11 C 0.086 3.914 12 O -0.658 6.658 13 S 2.559 3.441 14 O -0.953 6.953 15 O -0.931 6.931 16 C -0.597 4.597 17 C 0.030 3.970 18 C -0.517 4.517 19 H 0.062 0.938 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.899 3.101 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.114 0.886 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.160 0.840 30 H 0.119 0.881 31 H 0.160 0.840 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.845 15.239 -15.097 21.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.209 6.209 3 C 0.077 3.923 4 C -0.154 4.154 5 C -0.135 4.135 6 C 0.246 3.754 7 O -0.321 6.321 8 C -0.104 4.104 9 C -0.023 4.023 10 Cl 0.009 6.991 11 C 0.042 3.958 12 O -0.615 6.615 13 S 2.660 3.340 14 O -0.951 6.951 15 O -0.929 6.929 16 C -0.728 4.728 17 C -0.009 4.009 18 C -0.556 4.556 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.726 3.274 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.132 0.868 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.177 0.823 30 H 0.135 0.865 31 H 0.177 0.823 32 H 0.139 0.861 33 H 0.147 0.853 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.400 15.053 -15.168 21.503 hybrid contribution -1.155 -0.888 0.593 1.573 sum -3.555 14.164 -14.574 20.632 Atomic orbital electron populations 1.23339 0.76469 1.05661 1.02023 1.86300 1.22987 1.24189 1.87428 1.18792 0.89728 0.86680 0.97084 1.21510 1.01625 0.90112 1.02139 1.20850 0.93876 0.96044 1.02723 1.24012 0.88730 0.92450 0.70222 1.90566 1.17320 1.90441 1.33753 1.21092 0.92123 0.97619 0.99538 1.20636 0.87433 0.92382 1.01828 1.98428 1.06106 1.98417 1.96151 1.17135 0.86127 0.82614 1.09965 1.85764 1.72301 1.44063 1.59349 1.06656 0.78949 0.75551 0.72866 1.93606 1.83699 1.46692 1.71143 1.93587 1.57522 1.59666 1.82138 1.30651 1.17910 1.12497 1.11764 1.18983 0.99765 0.96967 0.85163 1.20998 0.95587 1.38270 1.00756 0.91981 1.25064 0.96738 0.95925 0.96733 1.69962 1.28064 1.44448 1.10307 0.86429 0.83101 0.79006 0.78815 1.19692 1.20766 1.20810 0.86772 0.91383 0.91965 0.82268 0.86488 0.82262 0.86100 0.85325 0.94760 0.94767 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.89 7.50 -34.44 -0.26 -4.14 16 3 C 0.13 1.65 5.82 -39.20 -0.23 1.42 16 4 C -0.13 -1.42 8.58 -38.98 -0.33 -1.75 16 5 C -0.13 -1.18 5.87 -105.07 -0.62 -1.79 16 6 C 0.39 2.68 11.44 34.22 0.39 3.07 16 7 O -0.45 -4.73 17.15 5.55 0.10 -4.64 16 8 C -0.08 -0.76 9.56 -39.09 -0.37 -1.13 16 9 C 0.01 0.08 5.64 -39.47 -0.22 -0.14 16 10 Cl -0.02 -0.28 27.23 -51.86 -1.41 -1.69 16 11 C 0.09 1.30 4.81 -38.84 -0.19 1.11 16 12 O -0.66 -11.41 9.27 -53.54 -0.50 -11.91 16 13 S 2.56 51.28 5.14 -107.50 -0.55 50.73 16 14 O -0.95 -19.71 15.16 -67.04 -1.02 -20.73 16 15 O -0.93 -21.30 18.09 -67.04 -1.21 -22.51 16 16 C -0.60 -12.11 4.45 37.16 0.17 -11.95 16 17 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 18 C -0.52 -14.09 9.11 -34.44 -0.31 -14.40 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 22 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 0.59 7.65 -51.93 -0.40 0.19 16 28 H 0.06 0.42 7.67 -51.93 -0.40 0.02 16 29 H 0.16 1.41 5.86 -52.48 -0.31 1.11 16 30 H 0.12 0.28 8.06 -52.49 -0.42 -0.14 16 31 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.12 2.23 6.03 -51.92 -0.31 1.91 16 33 H 0.13 2.41 8.09 -51.92 -0.42 1.99 16 34 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 341.11 15.07 5.14 5.14 Total: -1.00 -35.96 341.11 -8.45 -44.42 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -3.49 Total: -2.78 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -0.96 Total: -22.24 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.74 Total: -25.51 kcal Atomic # 8 Polarization: -61.04 SS G_CDS: -2.89 Total: -63.93 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 51.28 SS G_CDS: -0.55 Total: 50.73 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.41 Total: -1.69 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.96 -8.45 -44.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732215861.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.583 kcal (2) G-P(sol) polarization free energy of solvation -35.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds