Wall clock time and date at job start Wed Apr 1 2020 05:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36003 * 117.00090 * 2 1 4 4 C 1.38053 * 119.98310 * 0.27809 * 3 2 1 5 5 C 1.40029 * 119.84655 * 180.27067 * 4 3 2 6 6 C 1.46863 * 120.09239 * 179.74335 * 5 4 3 7 7 O 1.21293 * 119.99903 * 359.97438 * 6 5 4 8 8 C 1.40016 * 119.80864 * 359.72685 * 5 4 3 9 9 C 1.37765 * 119.96308 * 359.97438 * 8 5 4 10 10 Cl 1.73612 * 119.92275 * 180.02562 * 9 8 5 11 11 C 1.39015 * 120.16120 * 0.02562 * 9 8 5 12 12 O 1.35771 * 119.91018 * 180.02562 * 11 9 8 13 13 S 1.52200 * 114.00080 * 89.99766 * 12 11 9 14 14 O 1.42096 * 104.27696 * 318.93174 * 13 12 11 15 15 O 1.42097 * 104.27816 * 191.07020 * 13 12 11 16 16 C 1.81399 * 104.44943 * 75.00123 * 13 12 11 17 17 C 1.53002 * 109.47162 * 180.02562 * 16 13 12 18 18 C 1.50706 * 109.46925 * 179.97438 * 17 16 13 19 19 H 1.07999 * 120.00196 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99394 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00338 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99424 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47233 * 120.00158 * 22 20 18 25 25 H 1.48508 * 109.46883 * 239.99963 * 22 20 18 26 26 H 1.09002 * 109.47093 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47109 * 299.99911 * 1 2 3 28 28 H 1.08999 * 109.47624 * 59.99730 * 1 2 3 29 29 H 1.08009 * 120.07661 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.99381 * 179.97438 * 6 5 4 31 31 H 1.07999 * 120.01774 * 180.02562 * 8 5 4 32 32 H 1.09004 * 109.47089 * 299.99831 * 16 13 12 33 33 H 1.09004 * 109.47568 * 59.99841 * 16 13 12 34 34 H 1.09000 * 109.46497 * 299.99702 * 17 16 13 35 35 H 1.08996 * 109.46876 * 60.00092 * 17 16 13 36 36 H 0.96996 * 119.99730 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2942 2.3694 0.0058 5 6 1.9329 3.6155 0.0001 6 6 1.1379 4.8504 0.0005 7 8 -0.0736 4.7917 0.0054 8 6 3.3315 3.6808 -0.0058 9 6 4.0745 2.5206 -0.0053 10 17 5.8086 2.6028 -0.0118 11 6 3.4390 1.2843 0.0004 12 8 4.1762 0.1441 0.0014 13 16 4.5169 -0.3716 1.3922 14 8 4.8414 0.7986 2.1301 15 8 5.4859 -1.3852 1.1625 16 6 2.9685 -1.0970 1.9979 17 6 3.1837 -1.6565 3.4056 18 6 1.8971 -2.2585 3.9090 19 1 1.0141 -2.2432 3.2873 20 6 1.8473 -2.8289 5.1633 21 7 2.9224 -2.8470 5.9206 22 14 0.2528 -3.5757 5.7869 23 1 -0.8012 -3.4287 4.7512 24 1 0.4619 -5.0167 6.0785 25 1 -0.1699 -2.8761 7.0268 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 0.2156 2.3140 0.0099 30 1 1.6322 5.8107 -0.0035 31 1 3.8276 4.6401 -0.0098 32 1 2.1947 -0.3298 2.0267 33 1 2.6583 -1.9010 1.3305 34 1 3.9576 -2.4235 3.3772 35 1 3.4935 -0.8521 4.0728 36 1 2.8872 -3.2479 6.8031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732215861.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:59 Heat of formation + Delta-G solvation = -174.613261 kcal Electronic energy + Delta-G solvation = -26890.657978 eV Core-core repulsion = 22687.048723 eV Total energy + Delta-G solvation = -4203.609255 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.036 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.67937 -40.65338 -39.97527 -38.58951 -38.35021 -37.45101 -37.28559 -35.94247 -33.21403 -32.07982 -31.61272 -28.62572 -27.68223 -26.36859 -24.09070 -23.64250 -22.89616 -21.74631 -19.89503 -19.40745 -19.03354 -18.70285 -18.43266 -17.40467 -16.94392 -16.90231 -16.71189 -16.51560 -16.50618 -15.97496 -15.46149 -15.40729 -15.24788 -14.71113 -14.49286 -14.39203 -14.06922 -13.80911 -13.73700 -13.43186 -13.29998 -13.03395 -12.99760 -12.94156 -12.78023 -12.57302 -12.32835 -12.31480 -12.13870 -11.95915 -11.76285 -11.14593 -10.97417 -10.66066 -10.19272 -9.68772 -8.26225 -6.40110 -1.33355 -0.60599 -0.19523 0.62157 0.96270 1.16369 1.40838 1.41864 1.54668 1.92405 2.27417 2.36276 2.49613 2.79318 3.04143 3.07603 3.30232 3.48558 3.68607 3.78236 3.92426 3.94189 4.08684 4.29076 4.33624 4.41788 4.64168 4.66609 4.69244 4.74710 4.85153 5.06040 5.21479 5.22983 5.67385 5.91403 6.04336 6.35260 6.72345 7.29762 8.86620 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.004412 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.884586 B = 6345.288924 C = 7882.534125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.320 6.320 3 C 0.121 3.879 4 C -0.138 4.138 5 C -0.121 4.121 6 C 0.403 3.597 7 O -0.484 6.484 8 C -0.067 4.067 9 C -0.010 4.010 10 Cl -0.035 7.035 11 C 0.034 3.966 12 O -0.652 6.652 13 S 2.579 3.421 14 O -0.965 6.965 15 O -0.971 6.971 16 C -0.589 4.589 17 C 0.026 3.974 18 C -0.533 4.533 19 H 0.077 0.923 20 C -0.002 4.002 21 N -0.934 5.934 22 Si 0.974 3.026 23 H -0.253 1.253 24 H -0.280 1.280 25 H -0.277 1.277 26 H 0.122 0.878 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.176 0.824 30 H 0.180 0.820 31 H 0.206 0.794 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.006 0.994 35 H 0.012 0.988 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.334 17.624 -16.023 24.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.234 6.234 3 C 0.072 3.928 4 C -0.157 4.157 5 C -0.123 4.123 6 C 0.262 3.738 7 O -0.357 6.357 8 C -0.085 4.085 9 C -0.039 4.039 10 Cl -0.006 7.006 11 C -0.010 4.010 12 O -0.610 6.610 13 S 2.680 3.320 14 O -0.963 6.963 15 O -0.969 6.969 16 C -0.720 4.720 17 C -0.013 4.013 18 C -0.572 4.572 19 H 0.096 0.904 20 C -0.201 4.201 21 N -0.574 5.574 22 Si 0.797 3.203 23 H -0.177 1.177 24 H -0.206 1.206 25 H -0.203 1.203 26 H 0.140 0.860 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.193 0.807 30 H 0.196 0.804 31 H 0.223 0.777 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.024 0.976 35 H 0.030 0.970 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.891 17.430 -16.100 24.226 hybrid contribution -0.455 -1.459 0.779 1.716 sum -5.346 15.970 -15.320 22.767 Atomic orbital electron populations 1.23640 0.74697 1.06755 1.03474 1.86250 1.24936 1.24748 1.87434 1.18925 0.89191 0.87533 0.97196 1.21837 1.02400 0.90043 1.01415 1.21381 0.94131 0.96695 1.00102 1.24781 0.87890 0.93072 0.68091 1.90584 1.19073 1.90648 1.35391 1.21590 0.92011 0.98062 0.96850 1.20979 0.87041 0.93077 1.02814 1.98420 1.07451 1.98415 1.96274 1.17722 0.87027 0.82287 1.13998 1.85716 1.72874 1.45508 1.56888 1.05972 0.78157 0.74811 0.73080 1.93563 1.83758 1.46795 1.72183 1.93527 1.58991 1.61149 1.83214 1.30498 1.19346 1.13431 1.08736 1.18832 0.98784 0.95665 0.88032 1.21466 0.96454 1.38045 1.01257 0.90436 1.26102 1.00566 0.96355 0.97029 1.70109 1.30720 1.45666 1.10873 0.85268 0.78698 0.77787 0.78521 1.17659 1.20554 1.20310 0.85992 0.90938 0.89491 0.80713 0.80393 0.77667 0.84142 0.84011 0.97585 0.96984 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.32 -8.14 7.50 -79.53 -0.60 -8.73 16 3 C 0.12 3.03 5.82 22.52 0.13 3.16 16 4 C -0.14 -2.56 8.58 22.66 0.19 -2.36 16 5 C -0.12 -1.68 5.87 -20.16 -0.12 -1.80 16 6 C 0.40 3.52 11.44 70.08 0.80 4.33 16 7 O -0.48 -8.35 17.15 -3.07 -0.05 -8.40 16 8 C -0.07 -0.96 9.56 22.59 0.22 -0.74 16 9 C -0.01 -0.24 5.64 22.34 0.13 -0.12 16 10 Cl -0.03 -0.94 27.23 -2.72 -0.07 -1.01 16 11 C 0.03 1.00 4.81 22.75 0.11 1.11 16 12 O -0.65 -23.15 9.27 -57.98 -0.54 -23.68 16 13 S 2.58 107.06 5.14 -56.49 -0.29 106.77 16 14 O -0.96 -41.05 15.16 -118.57 -1.80 -42.85 16 15 O -0.97 -46.63 18.09 -118.57 -2.15 -48.78 16 16 C -0.59 -24.50 4.45 71.98 0.32 -24.18 16 17 C 0.03 1.36 4.98 29.85 0.15 1.51 16 18 C -0.53 -29.38 9.11 25.60 0.23 -29.14 16 19 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 20 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 21 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 22 Si 0.97 42.66 29.54 68.60 2.03 44.68 16 23 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 24 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 25 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 26 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.07 1.12 7.65 -2.39 -0.02 1.11 16 28 H 0.09 0.98 7.67 -2.39 -0.02 0.96 16 29 H 0.18 2.62 5.86 -2.91 -0.02 2.60 16 30 H 0.18 -0.43 8.06 -2.91 -0.02 -0.45 16 31 H 0.21 0.93 8.06 -2.91 -0.02 0.90 16 32 H 0.14 5.20 6.03 -2.39 -0.01 5.19 16 33 H 0.14 5.42 8.09 -2.39 -0.02 5.41 16 34 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -82.00 341.11 1.69 -80.31 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.14 Total: 4.64 kcal Atomic # 6 Polarization: -50.40 SS G_CDS: 3.74 Total: -46.66 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.28 Total: -56.29 kcal Atomic # 8 Polarization: -127.31 SS G_CDS: -5.13 Total: -132.44 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 107.06 SS G_CDS: -0.29 Total: 106.77 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.07 Total: -1.01 kcal Total: -82.00 1.69 -80.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732215861.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.301 kcal (2) G-P(sol) polarization free energy of solvation -82.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds