Wall clock time and date at job start Wed Apr 1 2020 05:28:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50692 * 1
3 3 C 1.37451 * 123.36231 * 2 1
4 4 C 1.33849 * 115.10817 * 180.02562 * 3 2 1
5 5 S 1.76198 * 124.51447 * 180.02562 * 4 3 2
6 6 N 1.65595 * 107.21804 * 89.99906 * 5 4 3
7 7 O 1.42104 * 106.40254 * 336.45924 * 5 4 3
8 8 O 1.42100 * 106.40103 * 203.54255 * 5 4 3
9 9 S 1.70620 * 110.96933 * 0.26659 * 4 3 2
10 10 C 1.36770 * 123.36167 * 180.02562 * 2 1 3
11 11 C 1.46460 * 125.46082 * 359.96091 * 10 2 1
12 12 O 1.21741 * 120.00116 * 7.49187 * 11 10 2
13 13 N 1.34780 * 119.99830 * 187.48967 * 11 10 2
14 14 C 1.36883 * 119.99921 * 185.42986 * 13 11 10
15 15 H 1.07988 * 120.00495 * 133.43890 * 14 13 11
16 16 C 1.39008 * 119.99612 * 313.43889 * 14 13 11
17 17 N 1.31401 * 119.99787 * 170.51295 * 16 14 13
18 18 Si 1.86800 * 120.00355 * 350.51244 * 16 14 13
19 19 H 1.48497 * 109.47367 * 96.34858 * 18 16 14
20 20 H 1.48499 * 109.47171 * 216.35557 * 18 16 14
21 21 H 1.48508 * 109.46706 * 336.35096 * 18 16 14
22 22 C 1.46496 * 120.00212 * 5.42409 * 13 11 10
23 23 C 1.50700 * 109.47585 * 275.05021 * 22 13 11
24 24 O 1.20828 * 119.99747 * 359.97438 * 23 22 13
25 25 O 1.34223 * 120.00499 * 180.02562 * 23 22 13
26 26 H 1.09001 * 109.47080 * 89.97443 * 1 2 3
27 27 H 1.09003 * 109.47364 * 209.97715 * 1 2 3
28 28 H 1.08999 * 109.47491 * 329.97597 * 1 2 3
29 29 H 1.07996 * 122.44609 * 0.02562 * 3 2 1
30 30 H 0.96995 * 120.00586 * 359.97438 * 6 5 4
31 31 H 0.97007 * 119.99488 * 179.72718 * 6 5 4
32 32 H 0.97000 * 119.99858 * 179.97438 * 17 16 14
33 33 H 1.09010 * 109.46929 * 35.04727 * 22 13 11
34 34 H 1.08994 * 109.47407 * 155.04568 * 22 13 11
35 35 H 0.96698 * 117.00232 * 179.97438 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2628 1.1480 0.0000
4 6 3.5874 0.9558 -0.0005
5 16 4.7839 2.2493 0.0000
6 7 5.1172 2.6081 1.5819
7 8 4.1388 3.3929 -0.5435
8 8 5.9736 1.6956 -0.5453
9 16 3.9630 -0.7085 -0.0085
10 6 2.2591 -1.1423 -0.0005
11 6 1.7300 -2.5080 -0.0003
12 8 0.5353 -2.6980 -0.1371
13 7 2.5657 -3.5545 0.1513
14 6 2.0889 -4.8328 0.0406
15 1 2.6221 -5.5583 -0.5556
16 6 0.9183 -5.1971 0.6958
17 7 0.3594 -6.3594 0.4447
18 14 0.1398 -4.0342 1.9331
19 1 -0.9302 -3.2478 1.2683
20 1 -0.4441 -4.8189 3.0505
21 1 1.1750 -3.1113 2.4644
22 6 3.9845 -3.3238 0.4344
23 6 4.7256 -3.1034 -0.8591
24 8 4.1298 -3.1361 -1.9098
25 8 6.0476 -2.8717 -0.8442
26 1 -0.3633 0.0005 -1.0277
27 1 -0.3634 -0.8902 0.5135
28 1 -0.3634 0.8897 0.5142
29 1 1.8203 2.1331 0.0004
30 1 4.6698 2.1243 2.2936
31 1 5.7626 3.2997 1.7967
32 1 -0.4573 -6.6138 0.9021
33 1 4.0900 -2.4432 1.0682
34 1 4.3985 -4.1920 0.9470
35 1 6.4793 -2.7367 -1.6988
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000738480261.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:28:29
Heat of formation + Delta-G solvation = -137.098372 kcal
Electronic energy + Delta-G solvation = -27359.191736 eV
Core-core repulsion = 23191.545707 eV
Total energy + Delta-G solvation = -4167.646029 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 348.037 amu
Computer time = 1.62 seconds
Orbital eigenvalues (eV)
-40.37687 -39.37174 -37.82637 -37.17757 -35.96827 -35.93408 -34.88430 -33.41930
-32.59085 -31.01125 -28.58742 -28.35245 -25.08296 -23.83085 -22.15680 -20.77689
-19.84143 -18.98738 -18.59539 -17.93338 -17.68474 -17.49394 -17.00002 -16.38582
-16.12643 -16.00892 -15.48065 -15.38174 -14.98966 -14.59743 -13.85789 -13.66387
-13.43538 -13.06297 -12.96047 -12.64750 -12.38009 -12.35443 -12.27437 -12.18701
-12.14801 -12.11220 -11.79283 -11.32384 -11.27120 -11.19111 -10.74909 -10.73159
-10.52724 -10.37405 -10.16451 -9.18022 -9.11082 -8.61696 -8.44493 -8.12412
-6.49596 -4.36818 0.04967 0.32952 1.36302 1.70009 2.18374 2.49906
2.96479 3.01673 3.22769 3.26103 3.45527 3.48412 3.86093 3.86742
4.31030 4.64101 4.74323 4.95812 5.07894 5.15819 5.26002 5.46725
5.50949 5.58369 5.67157 5.74219 5.97995 6.05056 6.32337 6.66293
6.67704 6.76787 7.42239 7.51388 8.08625 8.26536 8.42316 8.97013
9.22611 10.51039
Molecular weight = 348.04amu
Principal moments of inertia in cm(-1)
A = 0.015911 B = 0.005009 C = 0.004170
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1759.312193 B = 5588.922069 C = 6712.372493
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.098 4.098
2 C -0.086 4.086
3 C 0.011 3.989
4 C -0.862 4.862
5 S 2.733 3.267
6 N -1.250 6.250
7 O -0.961 6.961
8 O -0.960 6.960
9 S 0.291 5.709
10 C -0.179 4.179
11 C 0.509 3.491
12 O -0.511 6.511
13 N -0.427 5.427
14 C -0.334 4.334
15 H 0.106 0.894
16 C 0.083 3.917
17 N -0.848 5.848
18 Si 0.944 3.056
19 H -0.254 1.254
20 H -0.312 1.312
21 H -0.288 1.288
22 C 0.090 3.910
23 C 0.447 3.553
24 O -0.484 6.484
25 O -0.515 6.515
26 H 0.075 0.925
27 H 0.092 0.908
28 H 0.062 0.938
29 H 0.154 0.846
30 H 0.418 0.582
31 H 0.419 0.581
32 H 0.280 0.720
33 H 0.105 0.895
34 H 0.145 0.855
35 H 0.409 0.591
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.698 14.068 5.572 17.973
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.100 4.100
3 C -0.026 4.026
4 C -1.065 5.065
5 S 2.818 3.182
6 N -0.925 5.925
7 O -0.951 6.951
8 O -0.950 6.950
9 S 0.565 5.435
10 C -0.303 4.303
11 C 0.301 3.699
12 O -0.396 6.396
13 N -0.147 5.147
14 C -0.460 4.460
15 H 0.123 0.877
16 C -0.129 4.129
17 N -0.481 5.481
18 Si 0.778 3.222
19 H -0.181 1.181
20 H -0.243 1.243
21 H -0.214 1.214
22 C -0.038 4.038
23 C 0.284 3.716
24 O -0.370 6.370
25 O -0.327 6.327
26 H 0.094 0.906
27 H 0.110 0.890
28 H 0.081 0.919
29 H 0.171 0.829
30 H 0.245 0.755
31 H 0.250 0.750
32 H 0.090 0.910
33 H 0.122 0.878
34 H 0.162 0.838
35 H 0.268 0.732
Dipole moment (debyes) X Y Z Total
from point charges 10.338 13.302 4.616 17.467
hybrid contribution -1.595 1.034 0.531 1.973
sum 8.743 14.336 5.147 17.563
Atomic orbital electron populations
1.20659 0.88136 1.03552 1.03321 1.19588 0.98341 0.90125 1.01900
1.19611 0.90077 1.00149 0.92724 1.34939 1.16424 1.22313 1.32796
1.00648 0.72708 0.72690 0.72118 1.53056 1.59163 1.53547 1.26744
1.93587 1.76501 1.48368 1.76627 1.93609 1.45570 1.79242 1.76560
1.83272 1.03652 0.91426 1.65154 1.25608 0.97247 0.99305 1.08148
1.17057 0.87635 0.82132 0.83102 1.90539 1.13837 1.82934 1.52277
1.43269 1.03753 1.06764 1.60891 1.19012 1.10740 0.84657 1.31607
0.87689 1.25554 0.95598 0.95796 0.95904 1.69658 1.18401 1.21180
1.38889 0.85651 0.80762 0.79074 0.76759 1.18090 1.24332 1.21435
1.21613 0.85232 1.05163 0.91819 1.24130 0.80884 0.73379 0.93236
1.90787 1.68371 1.44844 1.32965 1.84512 1.23378 1.83528 1.41329
0.90608 0.88975 0.91889 0.82866 0.75470 0.75041 0.90980 0.87820
0.83751 0.73249
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 45.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.58 9.46 36.00 0.34 -1.24 16
2 C -0.09 -1.47 5.91 -105.44 -0.62 -2.09 16
3 C 0.01 0.16 9.60 -41.41 -0.40 -0.24 16
4 C -0.86 -12.02 6.32 29.19 0.18 -11.83 16
5 S 2.73 32.67 6.41 -107.50 -0.69 31.98 16
6 N -1.25 -8.99 9.55 60.35 0.58 -8.42 16
7 O -0.96 -13.92 17.74 -57.17 -1.01 -14.94 16
8 O -0.96 -14.01 17.82 -57.17 -1.02 -15.03 16
9 S 0.29 4.56 15.56 -107.50 -1.67 2.89 16
10 C -0.18 -3.48 6.18 -36.80 -0.23 -3.71 16
11 C 0.51 11.91 5.58 -12.95 -0.07 11.84 16
12 O -0.51 -13.31 9.15 5.15 0.05 -13.26 16
13 N -0.43 -9.78 1.69 -117.66 -0.20 -9.98 16
14 C -0.33 -8.81 9.70 -15.01 -0.15 -8.96 16
15 H 0.11 2.93 8.06 -52.49 -0.42 2.51 16
16 C 0.08 2.27 5.11 -17.45 -0.09 2.18 16
17 N -0.85 -24.07 13.96 55.50 0.77 -23.30 16
18 Si 0.94 23.20 24.24 -169.99 -4.12 19.08 16
19 H -0.25 -6.50 6.37 56.52 0.36 -6.14 16
20 H -0.31 -7.50 7.11 56.52 0.40 -7.09 16
21 H -0.29 -6.71 6.82 56.52 0.39 -6.33 16
22 C 0.09 1.56 5.53 -5.20 -0.03 1.53 16
23 C 0.45 7.61 5.29 36.01 0.19 7.80 16
24 O -0.48 -10.19 16.99 -18.75 -0.32 -10.51 16
25 O -0.52 -6.50 13.31 -39.24 -0.52 -7.02 16
26 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16
27 H 0.09 1.75 6.21 -51.93 -0.32 1.43 16
28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
29 H 0.15 1.75 8.02 -52.49 -0.42 1.33 16
30 H 0.42 2.18 8.92 -34.47 -0.31 1.87 16
31 H 0.42 2.08 8.96 -34.46 -0.31 1.77 16
32 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16
33 H 0.11 1.55 5.02 -26.67 -0.13 1.42 16
34 H 0.14 2.14 8.00 -51.93 -0.42 1.72 16
35 H 0.41 3.58 9.10 45.56 0.41 3.99 16
LS Contribution 322.29 15.07 4.86 4.86
Total: -1.00 -37.56 322.29 -6.12 -43.68
By element:
Atomic # 1 Polarization: 6.63 SS G_CDS: -1.95 Total: 4.68 kcal
Atomic # 6 Polarization: -3.85 SS G_CDS: -0.87 Total: -4.72 kcal
Atomic # 7 Polarization: -42.85 SS G_CDS: 1.15 Total: -41.69 kcal
Atomic # 8 Polarization: -57.93 SS G_CDS: -2.83 Total: -60.75 kcal
Atomic # 14 Polarization: 23.20 SS G_CDS: -4.12 Total: 19.08 kcal
Atomic # 16 Polarization: 37.22 SS G_CDS: -2.36 Total: 34.86 kcal
Total LS contribution 4.86 Total: 4.86 kcal
Total: -37.56 -6.12 -43.68 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000738480261.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -93.416 kcal
(2) G-P(sol) polarization free energy of solvation -37.561 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.976 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.683 kcal
(6) G-S(sol) free energy of system = (1) + (5) -137.098 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.62 seconds