Wall clock time and date at job start Wed Apr 1 2020 05:28:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50692 * 1
3 3 C 1.37451 * 123.36231 * 2 1
4 4 C 1.33849 * 115.10817 * 180.02562 * 3 2 1
5 5 S 1.76198 * 124.51447 * 180.02562 * 4 3 2
6 6 N 1.65595 * 107.21804 * 89.99906 * 5 4 3
7 7 O 1.42104 * 106.40254 * 336.45924 * 5 4 3
8 8 O 1.42100 * 106.40103 * 203.54255 * 5 4 3
9 9 S 1.70620 * 110.96933 * 0.26659 * 4 3 2
10 10 C 1.36770 * 123.36167 * 180.02562 * 2 1 3
11 11 C 1.46460 * 125.46082 * 359.96091 * 10 2 1
12 12 O 1.21741 * 120.00116 * 7.49187 * 11 10 2
13 13 N 1.34780 * 119.99830 * 187.48967 * 11 10 2
14 14 C 1.36883 * 119.99921 * 185.42986 * 13 11 10
15 15 H 1.07988 * 120.00495 * 133.43890 * 14 13 11
16 16 C 1.39008 * 119.99612 * 313.43889 * 14 13 11
17 17 N 1.31401 * 119.99787 * 170.51295 * 16 14 13
18 18 Si 1.86800 * 120.00355 * 350.51244 * 16 14 13
19 19 H 1.48497 * 109.47367 * 96.34858 * 18 16 14
20 20 H 1.48499 * 109.47171 * 216.35557 * 18 16 14
21 21 H 1.48508 * 109.46706 * 336.35096 * 18 16 14
22 22 C 1.46496 * 120.00212 * 5.42409 * 13 11 10
23 23 C 1.50700 * 109.47585 * 275.05021 * 22 13 11
24 24 O 1.20828 * 119.99747 * 359.97438 * 23 22 13
25 25 O 1.34223 * 120.00499 * 180.02562 * 23 22 13
26 26 H 1.09001 * 109.47080 * 89.97443 * 1 2 3
27 27 H 1.09003 * 109.47364 * 209.97715 * 1 2 3
28 28 H 1.08999 * 109.47491 * 329.97597 * 1 2 3
29 29 H 1.07996 * 122.44609 * 0.02562 * 3 2 1
30 30 H 0.96995 * 120.00586 * 359.97438 * 6 5 4
31 31 H 0.97007 * 119.99488 * 179.72718 * 6 5 4
32 32 H 0.97000 * 119.99858 * 179.97438 * 17 16 14
33 33 H 1.09010 * 109.46929 * 35.04727 * 22 13 11
34 34 H 1.08994 * 109.47407 * 155.04568 * 22 13 11
35 35 H 0.96698 * 117.00232 * 179.97438 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2628 1.1480 0.0000
4 6 3.5874 0.9558 -0.0005
5 16 4.7839 2.2493 0.0000
6 7 5.1172 2.6081 1.5819
7 8 4.1388 3.3929 -0.5435
8 8 5.9736 1.6956 -0.5453
9 16 3.9630 -0.7085 -0.0085
10 6 2.2591 -1.1423 -0.0005
11 6 1.7300 -2.5080 -0.0003
12 8 0.5353 -2.6980 -0.1371
13 7 2.5657 -3.5545 0.1513
14 6 2.0889 -4.8328 0.0406
15 1 2.6221 -5.5583 -0.5556
16 6 0.9183 -5.1971 0.6958
17 7 0.3594 -6.3594 0.4447
18 14 0.1398 -4.0342 1.9331
19 1 -0.9302 -3.2478 1.2683
20 1 -0.4441 -4.8189 3.0505
21 1 1.1750 -3.1113 2.4644
22 6 3.9845 -3.3238 0.4344
23 6 4.7256 -3.1034 -0.8591
24 8 4.1298 -3.1361 -1.9098
25 8 6.0476 -2.8717 -0.8442
26 1 -0.3633 0.0005 -1.0277
27 1 -0.3634 -0.8902 0.5135
28 1 -0.3634 0.8897 0.5142
29 1 1.8203 2.1331 0.0004
30 1 4.6698 2.1243 2.2936
31 1 5.7626 3.2997 1.7967
32 1 -0.4573 -6.6138 0.9021
33 1 4.0900 -2.4432 1.0682
34 1 4.3985 -4.1920 0.9470
35 1 6.4793 -2.7367 -1.6988
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000738480261.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:28:29
Heat of formation + Delta-G solvation = -171.054993 kcal
Electronic energy + Delta-G solvation = -27360.664206 eV
Core-core repulsion = 23191.545707 eV
Total energy + Delta-G solvation = -4169.118499 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 348.037 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-41.88302 -40.87210 -39.19808 -38.26442 -37.28297 -37.03821 -36.57919 -34.51588
-34.10664 -32.33807 -30.15096 -29.79640 -26.73217 -25.19110 -23.60737 -22.28600
-20.90311 -20.41332 -19.90105 -19.26784 -19.01257 -18.46365 -18.34293 -17.73762
-17.65246 -17.14335 -16.90779 -16.57786 -16.41556 -16.20055 -15.48981 -15.04338
-14.96726 -14.71479 -14.46906 -14.07332 -13.84314 -13.68875 -13.44915 -13.31455
-13.27904 -13.21740 -13.19245 -13.03311 -12.58912 -12.47956 -12.44004 -12.08584
-11.99625 -11.83469 -11.40240 -11.04286 -10.78217 -10.27974 -10.04964 -9.62495
-8.52043 -6.43699 -1.19283 -0.73893 0.06914 0.39738 0.84825 1.16044
1.26118 1.36723 1.49586 1.65679 2.05460 2.12243 2.29591 2.43096
2.53150 2.86569 3.48214 3.59070 3.67244 3.88489 4.04086 4.21272
4.26250 4.37322 4.42236 4.70991 4.83709 5.05800 5.25791 5.35347
5.48686 5.53286 5.64620 6.32938 6.38109 6.52917 6.89985 7.01385
7.39692 8.53448
Molecular weight = 348.04amu
Principal moments of inertia in cm(-1)
A = 0.015911 B = 0.005009 C = 0.004170
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1759.312193 B = 5588.922069 C = 6712.372493
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.102 4.102
2 C -0.069 4.069
3 C 0.011 3.989
4 C -0.840 4.840
5 S 2.758 3.242
6 N -1.228 6.228
7 O -0.980 6.980
8 O -0.983 6.983
9 S 0.319 5.681
10 C -0.237 4.237
11 C 0.512 3.488
12 O -0.548 6.548
13 N -0.447 5.447
14 C -0.342 4.342
15 H 0.074 0.926
16 C 0.043 3.957
17 N -0.900 5.900
18 Si 0.990 3.010
19 H -0.277 1.277
20 H -0.308 1.308
21 H -0.270 1.270
22 C 0.082 3.918
23 C 0.458 3.542
24 O -0.532 6.532
25 O -0.493 6.493
26 H 0.075 0.925
27 H 0.059 0.941
28 H 0.106 0.894
29 H 0.191 0.809
30 H 0.431 0.569
31 H 0.434 0.566
32 H 0.280 0.720
33 H 0.134 0.866
34 H 0.168 0.832
35 H 0.430 0.570
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.889 18.271 6.938 22.877
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C -0.084 4.084
3 C -0.025 4.025
4 C -1.041 5.041
5 S 2.841 3.159
6 N -0.911 5.911
7 O -0.969 6.969
8 O -0.972 6.972
9 S 0.594 5.406
10 C -0.360 4.360
11 C 0.305 3.695
12 O -0.434 6.434
13 N -0.167 5.167
14 C -0.469 4.469
15 H 0.091 0.909
16 C -0.163 4.163
17 N -0.536 5.536
18 Si 0.823 3.177
19 H -0.205 1.205
20 H -0.238 1.238
21 H -0.195 1.195
22 C -0.045 4.045
23 C 0.297 3.703
24 O -0.421 6.421
25 O -0.307 6.307
26 H 0.094 0.906
27 H 0.078 0.922
28 H 0.124 0.876
29 H 0.208 0.792
30 H 0.262 0.738
31 H 0.268 0.732
32 H 0.090 0.910
33 H 0.150 0.850
34 H 0.185 0.815
35 H 0.292 0.708
Dipole moment (debyes) X Y Z Total
from point charges 12.602 17.479 6.006 22.370
hybrid contribution -2.063 0.132 0.006 2.067
sum 10.539 17.612 6.012 21.387
Atomic orbital electron populations
1.20719 0.87826 1.04081 1.03444 1.19971 0.98957 0.90436 0.99086
1.19873 0.89787 1.00677 0.92141 1.35432 1.17133 1.22111 1.29442
0.99938 0.71571 0.71532 0.72886 1.52562 1.59495 1.53987 1.25061
1.93576 1.76752 1.48623 1.77950 1.93593 1.46185 1.79483 1.77972
1.83029 1.00721 0.92254 1.64562 1.25315 1.00053 0.97719 1.12870
1.17681 0.87261 0.83857 0.80740 1.90496 1.15656 1.84187 1.53077
1.43249 1.05975 1.05363 1.62091 1.18695 1.10978 0.85645 1.31587
0.90879 1.26150 0.96168 0.96632 0.97364 1.69740 1.19535 1.22962
1.41333 0.84912 0.79854 0.77682 0.75292 1.20455 1.23839 1.19477
1.21830 0.82319 1.07599 0.92709 1.23935 0.81855 0.72253 0.92242
1.90784 1.69650 1.47284 1.34410 1.84450 1.20942 1.82416 1.42847
0.90609 0.92200 0.87562 0.79215 0.73809 0.73184 0.91027 0.84963
0.81496 0.70792
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -3.11 9.46 71.23 0.67 -2.43 16
2 C -0.07 -2.18 5.91 -20.40 -0.12 -2.30 16
3 C 0.01 0.27 9.60 21.09 0.20 0.47 16
4 C -0.84 -19.82 6.32 66.82 0.42 -19.40 16
5 S 2.76 53.40 6.41 -56.49 -0.36 53.04 16
6 N -1.23 -11.38 9.55 37.02 0.35 -11.02 16
7 O -0.98 -23.93 17.74 -128.00 -2.27 -26.20 16
8 O -0.98 -24.69 17.82 -128.00 -2.28 -26.97 16
9 S 0.32 9.03 15.56 -56.49 -0.88 8.15 16
10 C -0.24 -8.84 6.18 24.07 0.15 -8.69 16
11 C 0.51 24.23 5.58 86.38 0.48 24.72 16
12 O -0.55 -29.44 9.15 -4.48 -0.04 -29.48 16
13 N -0.45 -20.83 1.69 -644.36 -1.09 -21.92 16
14 C -0.34 -18.99 9.70 84.09 0.82 -18.17 16
15 H 0.07 4.39 8.06 -2.92 -0.02 4.37 16
16 C 0.04 2.46 5.11 84.94 0.43 2.89 16
17 N -0.90 -54.19 13.96 21.68 0.30 -53.89 16
18 Si 0.99 49.53 24.24 68.60 1.66 51.19 16
19 H -0.28 -14.65 6.37 99.48 0.63 -14.01 16
20 H -0.31 -14.78 7.11 99.48 0.71 -14.07 16
21 H -0.27 -12.34 6.82 99.48 0.68 -11.66 16
22 C 0.08 2.77 5.53 85.63 0.47 3.24 16
23 C 0.46 15.06 5.29 71.24 0.38 15.43 16
24 O -0.53 -22.46 16.99 21.96 0.37 -22.09 16
25 O -0.49 -11.05 13.31 -51.35 -0.68 -11.74 16
26 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16
27 H 0.06 2.26 6.21 -2.39 -0.01 2.25 16
28 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16
29 H 0.19 3.21 8.02 -2.91 -0.02 3.19 16
30 H 0.43 2.13 8.92 -96.75 -0.86 1.27 16
31 H 0.43 2.09 8.96 -96.74 -0.87 1.22 16
32 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16
33 H 0.13 3.64 5.02 -18.44 -0.09 3.55 16
34 H 0.17 4.77 8.00 -2.39 -0.02 4.75 16
35 H 0.43 6.22 9.10 -74.06 -0.67 5.55 16
Total: -1.00 -86.88 322.29 -2.37 -89.25
By element:
Atomic # 1 Polarization: 7.28 SS G_CDS: -1.37 Total: 5.91 kcal
Atomic # 6 Polarization: -8.15 SS G_CDS: 3.91 Total: -4.24 kcal
Atomic # 7 Polarization: -86.40 SS G_CDS: -0.44 Total: -86.83 kcal
Atomic # 8 Polarization: -111.58 SS G_CDS: -4.90 Total: -116.48 kcal
Atomic # 14 Polarization: 49.53 SS G_CDS: 1.66 Total: 51.19 kcal
Atomic # 16 Polarization: 62.44 SS G_CDS: -1.24 Total: 61.19 kcal
Total: -86.88 -2.37 -89.25 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000738480261.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -81.800 kcal
(2) G-P(sol) polarization free energy of solvation -86.882 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.682 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.373 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.255 kcal
(6) G-S(sol) free energy of system = (1) + (5) -171.055 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds