Wall clock time and date at job start Wed Apr 1 2020 05:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86795 * 120.00143 * 2 1 4 4 H 1.48499 * 109.47154 * 240.00657 * 3 2 1 5 5 H 1.48503 * 109.47345 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47196 * 120.00793 * 3 2 1 7 7 C 1.38949 * 119.99581 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99933 * 201.63488 * 7 2 1 9 9 N 1.37094 * 120.00557 * 21.63511 * 7 2 1 10 10 C 1.46499 * 119.99940 * 16.51104 * 9 7 2 11 11 C 1.50694 * 109.47364 * 264.07131 * 10 9 7 12 12 O 1.20826 * 120.00137 * 359.97438 * 11 10 9 13 13 O 1.34230 * 120.00211 * 180.02562 * 11 10 9 14 14 C 1.34779 * 120.00091 * 196.51880 * 9 7 2 15 15 O 1.21291 * 120.00094 * 359.97438 * 14 9 7 16 16 C 1.50699 * 119.99985 * 179.97438 * 14 9 7 17 17 C 1.50701 * 109.47330 * 179.97438 * 16 14 9 18 18 C 1.33393 * 125.20084 * 90.00050 * 17 16 14 19 19 C 1.38426 * 114.91932 * 180.02562 * 18 17 16 20 20 C 1.33387 * 114.91904 * 0.02562 * 19 18 17 21 21 S 1.76203 * 125.20131 * 179.97438 * 20 19 18 22 22 N 1.65604 * 107.21644 * 90.01481 * 21 20 19 23 23 O 1.42094 * 106.40464 * 203.55907 * 21 20 19 24 24 O 1.42106 * 106.40060 * 336.48217 * 21 20 19 25 25 S 1.75879 * 109.59818 * 359.97438 * 20 19 18 26 26 H 0.96997 * 119.99722 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47164 * 24.07187 * 10 9 7 28 28 H 1.09000 * 109.47325 * 144.07140 * 10 9 7 29 29 H 0.96703 * 116.99794 * 180.02562 * 13 11 10 30 30 H 1.09006 * 109.47218 * 59.99801 * 16 14 9 31 31 H 1.08999 * 109.47219 * 299.99836 * 16 14 9 32 32 H 1.07998 * 122.53581 * 0.04325 * 18 17 16 33 33 H 1.08000 * 122.53532 * 180.02562 * 19 18 17 34 34 H 0.97000 * 119.99888 * 0.02562 * 22 21 20 35 35 H 0.96998 * 119.99678 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2832 2.7465 0.0006 6 1 3.1021 1.6962 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0318 -1.2365 0.3443 9 7 1.3958 -2.3487 -0.4388 10 6 0.1671 -2.2643 -1.2320 11 6 -1.0272 -2.4241 -0.3270 12 8 -0.8683 -2.5919 0.8589 13 8 -2.2675 -2.3812 -0.8385 14 6 1.9235 -3.5523 -0.1397 15 8 2.9410 -3.6221 0.5169 16 6 1.2493 -4.8112 -0.6209 17 6 2.0342 -6.0107 -0.1558 18 6 1.8427 -6.6554 0.9962 19 6 2.6866 -7.7317 1.2094 20 6 3.5637 -7.9607 0.2309 21 16 4.7601 -9.2543 0.2214 22 7 4.0522 -10.5713 -0.4905 23 8 5.7980 -8.8346 -0.6536 24 8 4.9833 -9.6044 1.5804 25 16 3.3435 -6.7740 -1.0484 26 1 -0.4849 0.8400 0.0004 27 1 0.1203 -1.2944 -1.7274 28 1 0.1634 -3.0556 -1.9816 29 1 -3.0019 -2.4883 -0.2186 30 1 1.2053 -4.8062 -1.7100 31 1 0.2382 -4.8592 -0.2166 32 1 1.0864 -6.3601 1.7083 33 1 2.6385 -8.3399 2.1006 34 1 3.1366 -10.5183 -0.8064 35 1 4.5532 -11.3958 -0.5915 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739078352.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:44 Heat of formation + Delta-G solvation = -150.131257 kcal Electronic energy + Delta-G solvation = -25950.585446 eV Core-core repulsion = 21782.374268 eV Total energy + Delta-G solvation = -4168.211178 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -39.68006 -38.58149 -37.66722 -37.09946 -35.90661 -35.40365 -34.65672 -33.39516 -32.36737 -31.58747 -27.99204 -27.52305 -24.94896 -23.35542 -21.29800 -20.51495 -19.63910 -19.21351 -17.84542 -17.52752 -17.34105 -17.07202 -16.71544 -16.45539 -15.88720 -15.79319 -15.39955 -14.81538 -14.59205 -14.50818 -14.09465 -13.82481 -13.21537 -12.72966 -12.63950 -12.41264 -12.27079 -12.13308 -12.11312 -12.04566 -11.88570 -11.74350 -11.61776 -11.20223 -11.02962 -10.77475 -10.70665 -10.57944 -10.50934 -10.41519 -9.79668 -9.19657 -9.17506 -8.64473 -8.44952 -8.06514 -6.58105 -4.02328 0.25211 0.55060 1.46374 1.83869 2.53106 3.07318 3.07854 3.17403 3.21529 3.27306 3.47215 3.52614 3.92959 4.10676 4.51724 4.70634 4.77539 4.90685 5.14346 5.40456 5.41277 5.43924 5.70309 5.72047 5.75783 5.88852 6.17892 6.27687 6.36921 6.42555 6.78310 7.34056 7.43184 7.80809 8.21620 8.86301 8.93833 9.14442 9.65136 10.50659 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.019394 B = 0.002928 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.389223 B = 9561.717974 C =10390.643324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.031 3.969 3 Si 0.931 3.069 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.308 4.308 8 H 0.109 0.891 9 N -0.427 5.427 10 C 0.142 3.858 11 C 0.488 3.512 12 O -0.503 6.503 13 O -0.534 6.534 14 C 0.460 3.540 15 O -0.562 6.562 16 C -0.083 4.083 17 C -0.081 4.081 18 C -0.169 4.169 19 C 0.026 3.974 20 C -0.815 4.815 21 S 2.733 3.267 22 N -1.251 6.251 23 O -0.961 6.961 24 O -0.961 6.961 25 S 0.228 5.772 26 H 0.273 0.727 27 H 0.131 0.869 28 H 0.078 0.922 29 H 0.393 0.607 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.417 0.583 35 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.903 -15.813 -6.437 17.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.172 4.172 3 Si 0.758 3.242 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.434 4.434 8 H 0.127 0.873 9 N -0.146 5.146 10 C 0.015 3.985 11 C 0.328 3.672 12 O -0.388 6.388 13 O -0.345 6.345 14 C 0.247 3.753 15 O -0.444 6.444 16 C -0.125 4.125 17 C -0.202 4.202 18 C -0.199 4.199 19 C -0.011 4.011 20 C -1.017 5.017 21 S 2.819 3.181 22 N -0.926 5.926 23 O -0.950 6.950 24 O -0.951 6.951 25 S 0.495 5.505 26 H 0.083 0.917 27 H 0.149 0.851 28 H 0.096 0.904 29 H 0.250 0.750 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.167 0.833 33 H 0.171 0.829 34 H 0.244 0.756 35 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -0.457 -15.191 -7.046 16.751 hybrid contribution -2.058 0.791 1.706 2.788 sum -2.514 -14.400 -5.339 15.562 Atomic orbital electron populations 1.69781 1.06085 1.28224 1.47907 1.25248 0.95327 1.00077 0.96507 0.85904 0.79003 0.80030 0.79309 1.19690 1.20942 1.19716 1.19699 0.97958 0.83173 1.42612 0.87299 1.43415 1.20187 1.05195 1.45846 1.20736 0.81441 1.05078 0.91234 1.23817 0.83369 0.71004 0.89028 1.90630 1.85836 1.44857 1.17445 1.84521 1.17316 1.86277 1.46368 1.19633 0.87795 0.83536 0.84312 1.90593 1.26075 1.86025 1.41751 1.20443 0.99493 0.90492 1.02081 1.24645 0.98078 0.98745 0.98733 1.20281 1.03922 0.97647 0.98006 1.19922 0.89666 0.95168 0.96356 1.35146 1.28326 1.27098 1.11170 1.00639 0.71851 0.72025 0.73601 1.53096 1.27410 1.30441 1.81626 1.93610 1.52910 1.81743 1.66758 1.93596 1.83523 1.82681 1.35284 1.84034 1.29356 1.20419 1.16688 0.91676 0.85096 0.90407 0.75002 0.88549 0.87751 0.83343 0.82914 0.75618 0.75120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.09 9.28 55.50 0.52 -21.57 16 2 C 0.03 0.79 4.87 -17.47 -0.09 0.70 16 3 Si 0.93 19.91 29.60 -169.99 -5.03 14.88 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.31 -8.12 9.34 -14.93 -0.14 -8.26 16 8 H 0.11 3.05 7.37 -52.48 -0.39 2.66 16 9 N -0.43 -10.11 2.18 -116.10 -0.25 -10.36 16 10 C 0.14 2.81 4.97 -5.20 -0.03 2.79 16 11 C 0.49 9.91 5.86 36.00 0.21 10.12 16 12 O -0.50 -12.20 16.79 -18.75 -0.31 -12.51 16 13 O -0.53 -8.65 13.42 -39.26 -0.53 -9.18 16 14 C 0.46 10.51 7.41 -10.98 -0.08 10.43 16 15 O -0.56 -14.97 15.67 5.55 0.09 -14.88 16 16 C -0.08 -1.39 4.81 -29.03 -0.14 -1.53 16 17 C -0.08 -1.31 5.00 -36.00 -0.18 -1.49 16 18 C -0.17 -2.54 10.05 -41.21 -0.41 -2.96 16 19 C 0.03 0.34 9.84 -41.21 -0.41 -0.06 16 20 C -0.81 -10.85 6.54 29.04 0.19 -10.66 16 21 S 2.73 32.24 6.43 -107.50 -0.69 31.55 16 22 N -1.25 -8.37 9.55 60.35 0.58 -7.80 16 23 O -0.96 -14.48 17.91 -57.17 -1.02 -15.51 16 24 O -0.96 -14.00 17.80 -57.17 -1.02 -15.02 16 25 S 0.23 3.32 23.20 -107.50 -2.49 0.83 16 26 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 27 H 0.13 2.73 6.37 -51.93 -0.33 2.40 16 28 H 0.08 1.18 6.69 -51.93 -0.35 0.84 16 29 H 0.39 4.79 9.10 45.56 0.41 5.20 16 30 H 0.10 1.29 7.42 -51.93 -0.39 0.91 16 31 H 0.10 1.65 7.52 -51.93 -0.39 1.26 16 32 H 0.15 2.10 8.06 -52.49 -0.42 1.68 16 33 H 0.15 1.64 8.05 -52.49 -0.42 1.21 16 34 H 0.42 1.83 8.92 -34.47 -0.31 1.53 16 35 H 0.42 1.94 8.96 -34.47 -0.31 1.64 16 LS Contribution 338.62 15.07 5.10 5.10 Total: -1.00 -38.06 338.62 -8.16 -46.23 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -2.02 Total: 9.16 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -1.07 Total: -0.92 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.84 Total: -39.73 kcal Atomic # 8 Polarization: -64.30 SS G_CDS: -2.80 Total: -67.10 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Atomic # 16 Polarization: 35.56 SS G_CDS: -3.19 Total: 32.37 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -38.06 -8.16 -46.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078352.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.904 kcal (2) G-P(sol) polarization free energy of solvation -38.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds