Wall clock time and date at job start Wed Apr 1 2020 05:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86795 * 120.00143 * 2 1 4 4 H 1.48499 * 109.47154 * 240.00657 * 3 2 1 5 5 H 1.48503 * 109.47345 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47196 * 120.00793 * 3 2 1 7 7 C 1.38949 * 119.99581 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99933 * 201.63488 * 7 2 1 9 9 N 1.37094 * 120.00557 * 21.63511 * 7 2 1 10 10 C 1.46499 * 119.99940 * 16.51104 * 9 7 2 11 11 C 1.50694 * 109.47364 * 264.07131 * 10 9 7 12 12 O 1.20826 * 120.00137 * 359.97438 * 11 10 9 13 13 O 1.34230 * 120.00211 * 180.02562 * 11 10 9 14 14 C 1.34779 * 120.00091 * 196.51880 * 9 7 2 15 15 O 1.21291 * 120.00094 * 359.97438 * 14 9 7 16 16 C 1.50699 * 119.99985 * 179.97438 * 14 9 7 17 17 C 1.50701 * 109.47330 * 179.97438 * 16 14 9 18 18 C 1.33393 * 125.20084 * 90.00050 * 17 16 14 19 19 C 1.38426 * 114.91932 * 180.02562 * 18 17 16 20 20 C 1.33387 * 114.91904 * 0.02562 * 19 18 17 21 21 S 1.76203 * 125.20131 * 179.97438 * 20 19 18 22 22 N 1.65604 * 107.21644 * 90.01481 * 21 20 19 23 23 O 1.42094 * 106.40464 * 203.55907 * 21 20 19 24 24 O 1.42106 * 106.40060 * 336.48217 * 21 20 19 25 25 S 1.75879 * 109.59818 * 359.97438 * 20 19 18 26 26 H 0.96997 * 119.99722 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47164 * 24.07187 * 10 9 7 28 28 H 1.09000 * 109.47325 * 144.07140 * 10 9 7 29 29 H 0.96703 * 116.99794 * 180.02562 * 13 11 10 30 30 H 1.09006 * 109.47218 * 59.99801 * 16 14 9 31 31 H 1.08999 * 109.47219 * 299.99836 * 16 14 9 32 32 H 1.07998 * 122.53581 * 0.04325 * 18 17 16 33 33 H 1.08000 * 122.53532 * 180.02562 * 19 18 17 34 34 H 0.97000 * 119.99888 * 0.02562 * 22 21 20 35 35 H 0.96998 * 119.99678 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2832 2.7465 0.0006 6 1 3.1021 1.6962 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0318 -1.2365 0.3443 9 7 1.3958 -2.3487 -0.4388 10 6 0.1671 -2.2643 -1.2320 11 6 -1.0272 -2.4241 -0.3270 12 8 -0.8683 -2.5919 0.8589 13 8 -2.2675 -2.3812 -0.8385 14 6 1.9235 -3.5523 -0.1397 15 8 2.9410 -3.6221 0.5169 16 6 1.2493 -4.8112 -0.6209 17 6 2.0342 -6.0107 -0.1558 18 6 1.8427 -6.6554 0.9962 19 6 2.6866 -7.7317 1.2094 20 6 3.5637 -7.9607 0.2309 21 16 4.7601 -9.2543 0.2214 22 7 4.0522 -10.5713 -0.4905 23 8 5.7980 -8.8346 -0.6536 24 8 4.9833 -9.6044 1.5804 25 16 3.3435 -6.7740 -1.0484 26 1 -0.4849 0.8400 0.0004 27 1 0.1203 -1.2944 -1.7274 28 1 0.1634 -3.0556 -1.9816 29 1 -3.0019 -2.4883 -0.2186 30 1 1.2053 -4.8062 -1.7100 31 1 0.2382 -4.8592 -0.2166 32 1 1.0864 -6.3601 1.7083 33 1 2.6385 -8.3399 2.1006 34 1 3.1366 -10.5183 -0.8064 35 1 4.5532 -11.3958 -0.5915 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739078352.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:43 Heat of formation + Delta-G solvation = -182.261850 kcal Electronic energy + Delta-G solvation = -25951.978733 eV Core-core repulsion = 21782.374268 eV Total energy + Delta-G solvation = -4169.604465 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.30880 -40.12497 -38.91585 -38.18868 -37.03345 -36.98384 -36.36520 -34.08824 -34.00450 -33.11262 -29.60246 -28.87572 -26.64388 -24.61925 -22.85383 -21.59021 -21.16769 -20.19870 -19.04805 -18.96512 -18.71417 -18.39972 -18.14107 -17.75035 -17.33788 -16.85938 -16.51782 -16.46442 -16.22606 -15.96528 -15.63664 -15.20097 -14.64354 -14.07915 -14.02362 -13.67692 -13.58114 -13.50327 -13.38346 -13.25017 -13.24079 -13.14815 -13.03440 -12.68232 -12.44090 -12.35482 -12.17492 -12.10944 -11.90475 -11.53651 -11.36916 -10.97401 -10.68633 -10.13908 -9.90884 -9.56459 -8.47545 -5.98603 -0.73278 -0.55602 0.35936 0.70149 1.35142 1.39658 1.43301 1.52361 1.67233 1.83442 2.16638 2.23893 2.52396 2.61742 2.90408 3.08330 3.47815 3.71830 3.83724 4.03251 4.23449 4.32554 4.39902 4.45404 4.73232 4.75883 4.92274 5.03843 5.25768 5.28254 5.43358 5.95474 5.96785 6.34123 6.36162 7.06663 7.25930 7.44152 7.86086 8.58640 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.019394 B = 0.002928 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.389223 B = 9561.717974 C =10390.643324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.005 3.995 3 Si 0.988 3.012 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.285 1.285 7 C -0.343 4.343 8 H 0.077 0.923 9 N -0.440 5.440 10 C 0.137 3.863 11 C 0.496 3.504 12 O -0.549 6.549 13 O -0.517 6.517 14 C 0.450 3.550 15 O -0.613 6.613 16 C -0.070 4.070 17 C -0.109 4.109 18 C -0.173 4.173 19 C 0.023 3.977 20 C -0.810 4.810 21 S 2.758 3.242 22 N -1.228 6.228 23 O -0.994 6.994 24 O -0.988 6.988 25 S 0.224 5.776 26 H 0.276 0.724 27 H 0.121 0.879 28 H 0.129 0.871 29 H 0.414 0.586 30 H 0.133 0.867 31 H 0.115 0.885 32 H 0.153 0.847 33 H 0.179 0.821 34 H 0.431 0.569 35 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.133 -16.946 -7.631 19.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.197 4.197 3 Si 0.812 3.188 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.211 1.211 7 C -0.470 4.470 8 H 0.095 0.905 9 N -0.159 5.159 10 C 0.011 3.989 11 C 0.339 3.661 12 O -0.438 6.438 13 O -0.330 6.330 14 C 0.239 3.761 15 O -0.499 6.499 16 C -0.112 4.112 17 C -0.229 4.229 18 C -0.203 4.203 19 C -0.013 4.013 20 C -1.012 5.012 21 S 2.843 3.157 22 N -0.910 5.910 23 O -0.983 6.983 24 O -0.977 6.977 25 S 0.492 5.508 26 H 0.086 0.914 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.274 0.726 30 H 0.151 0.849 31 H 0.133 0.867 32 H 0.170 0.830 33 H 0.196 0.804 34 H 0.262 0.738 35 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -1.763 -16.328 -8.292 18.397 hybrid contribution -1.736 1.065 2.087 2.916 sum -3.499 -15.262 -6.205 16.843 Atomic orbital electron populations 1.69856 1.06642 1.28871 1.47371 1.25878 0.96106 1.02118 0.95631 0.85076 0.77981 0.76849 0.78899 1.18668 1.19698 1.21074 1.19556 0.97434 0.85291 1.44746 0.90471 1.43558 1.21337 1.04879 1.46128 1.20942 0.80003 1.06450 0.91479 1.23788 0.84445 0.69722 0.88178 1.90622 1.86674 1.47174 1.19305 1.84450 1.16698 1.85360 1.46443 1.20619 0.87116 0.85021 0.83308 1.90547 1.28315 1.87057 1.43942 1.20337 0.99159 0.87481 1.04222 1.24693 0.99180 0.99249 0.99819 1.20532 1.04181 0.97934 0.97677 1.20178 0.89034 0.94902 0.97174 1.35348 1.28040 1.27087 1.10696 0.99729 0.71080 0.72042 0.72838 1.52562 1.28182 1.29371 1.80863 1.93577 1.54723 1.82634 1.67404 1.93568 1.84024 1.83028 1.37086 1.83985 1.29011 1.20793 1.17056 0.91438 0.86114 0.85398 0.72591 0.84937 0.86660 0.82988 0.80362 0.73836 0.73421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.26 9.28 21.66 0.20 -44.06 16 2 C 0.00 0.24 4.87 84.93 0.41 0.66 16 3 Si 0.99 41.05 29.60 68.60 2.03 43.09 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.34 -18.65 9.34 84.04 0.79 -17.87 16 8 H 0.08 4.58 7.37 -2.91 -0.02 4.56 16 9 N -0.44 -21.04 2.18 -639.61 -1.39 -22.44 16 10 C 0.14 5.25 4.97 85.63 0.43 5.68 16 11 C 0.50 19.48 5.86 71.23 0.42 19.90 16 12 O -0.55 -26.48 16.79 21.96 0.37 -26.11 16 13 O -0.52 -15.43 13.42 -51.41 -0.69 -16.12 16 14 C 0.45 20.80 7.41 87.66 0.65 21.45 16 15 O -0.61 -33.83 15.67 -3.07 -0.05 -33.88 16 16 C -0.07 -2.28 4.81 29.10 0.14 -2.14 16 17 C -0.11 -3.42 5.00 24.59 0.12 -3.29 16 18 C -0.17 -5.05 10.05 21.22 0.21 -4.84 16 19 C 0.02 0.58 9.84 21.22 0.21 0.79 16 20 C -0.81 -20.52 6.54 66.72 0.44 -20.08 16 21 S 2.76 61.17 6.43 -56.49 -0.36 60.80 16 22 N -1.23 -13.40 9.55 37.02 0.35 -13.04 16 23 O -0.99 -29.12 17.91 -128.00 -2.29 -31.41 16 24 O -0.99 -27.43 17.80 -128.00 -2.28 -29.71 16 25 S 0.22 6.33 23.20 -56.49 -1.31 5.02 16 26 H 0.28 13.06 8.31 -92.71 -0.77 12.29 16 27 H 0.12 4.92 6.37 -2.39 -0.02 4.90 16 28 H 0.13 3.52 6.69 -2.39 -0.02 3.50 16 29 H 0.41 8.97 9.10 -74.06 -0.67 8.29 16 30 H 0.13 3.21 7.42 -2.38 -0.02 3.20 16 31 H 0.12 3.47 7.52 -2.39 -0.02 3.45 16 32 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 33 H 0.18 3.45 8.05 -2.91 -0.02 3.42 16 34 H 0.43 2.54 8.92 -96.74 -0.86 1.68 16 35 H 0.43 2.86 8.96 -96.75 -0.87 1.99 16 Total: -1.00 -84.70 338.62 -2.80 -87.50 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -1.19 Total: 20.11 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 3.81 Total: 0.25 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -0.84 Total: -79.54 kcal Atomic # 8 Polarization: -132.29 SS G_CDS: -4.94 Total: -137.23 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 16 Polarization: 67.50 SS G_CDS: -1.67 Total: 65.82 kcal Total: -84.70 -2.80 -87.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078352.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.762 kcal (2) G-P(sol) polarization free energy of solvation -84.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds