Wall clock time and date at job start Wed Apr 1 2020 05:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 120.00146 * 2 1 4 4 H 1.48500 * 109.47319 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47222 * 300.00081 * 3 2 1 6 6 H 1.48509 * 109.46704 * 59.99896 * 3 2 1 7 7 C 1.38951 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00596 * 201.13783 * 7 2 1 9 9 N 1.37099 * 119.99493 * 21.14402 * 7 2 1 10 10 C 1.46497 * 120.00382 * 16.24992 * 9 7 2 11 11 C 1.50696 * 109.47716 * 264.14875 * 10 9 7 12 12 O 1.20829 * 119.99715 * 0.02562 * 11 10 9 13 13 O 1.34224 * 120.00382 * 179.97438 * 11 10 9 14 14 C 1.34778 * 119.99695 * 196.25955 * 9 7 2 15 15 O 1.21289 * 120.00271 * 359.97438 * 14 9 7 16 16 C 1.50703 * 119.99760 * 179.97438 * 14 9 7 17 17 N 1.46506 * 109.46892 * 179.97438 * 16 14 9 18 18 S 1.65595 * 119.99757 * 164.99873 * 17 16 14 19 19 O 1.42104 * 106.40185 * 178.53726 * 18 17 16 20 20 O 1.42096 * 106.40555 * 311.45829 * 18 17 16 21 21 C 1.76202 * 107.21881 * 65.00282 * 18 17 16 22 22 C 1.33386 * 125.20787 * 89.99536 * 21 18 17 23 23 C 1.38422 * 114.92581 * 179.97438 * 22 21 18 24 24 C 1.33386 * 114.91844 * 0.02562 * 23 22 21 25 25 S 1.75884 * 125.20048 * 269.69252 * 21 18 17 26 26 H 0.97004 * 119.99807 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46955 * 24.15336 * 10 9 7 28 28 H 1.08999 * 109.47247 * 144.14234 * 10 9 7 29 29 H 0.96701 * 117.00294 * 180.02562 * 13 11 10 30 30 H 1.08997 * 109.47350 * 59.99849 * 16 14 9 31 31 H 1.08997 * 109.47198 * 299.99914 * 16 14 9 32 32 H 0.96999 * 119.99662 * 345.00152 * 17 16 14 33 33 H 1.08004 * 122.53866 * 359.95977 * 22 21 18 34 34 H 1.08001 * 122.54204 * 180.02562 * 23 22 21 35 35 H 1.08004 * 125.20292 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8893 2.3964 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0344 -1.2347 0.3378 9 7 1.3926 -2.3508 -0.4273 10 6 0.1549 -2.2707 -1.2069 11 6 -1.0290 -2.4275 -0.2878 12 8 -0.8565 -2.5892 0.8972 13 8 -2.2749 -2.3866 -0.7852 14 6 1.9254 -3.5527 -0.1303 15 8 2.9502 -3.6191 0.5149 16 6 1.2476 -4.8141 -0.6001 17 7 2.0174 -5.9776 -0.1529 18 16 1.3362 -7.4865 -0.1938 19 8 2.3336 -8.3895 0.2637 20 8 0.0581 -7.3665 0.4154 21 6 1.0458 -7.8819 -1.8862 22 6 1.9112 -8.5005 -2.6909 23 6 1.4615 -8.7055 -3.9838 24 6 0.2310 -8.2529 -4.2293 25 16 -0.4327 -7.5279 -2.7707 26 1 -0.4850 0.8401 -0.0004 27 1 0.1018 -1.3030 -1.7058 28 1 0.1434 -3.0651 -1.9530 29 1 -3.0023 -2.4916 -0.1566 30 1 1.1913 -4.8126 -1.6886 31 1 0.2412 -4.8622 -0.1844 32 1 2.9260 -5.8641 0.1672 33 1 2.8889 -8.8172 -2.3588 34 1 2.0615 -9.1948 -4.7369 35 1 -0.2814 -8.3252 -5.1773 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739079491.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:08 Heat of formation + Delta-G solvation = -140.613872 kcal Electronic energy + Delta-G solvation = -26695.327971 eV Core-core repulsion = 22527.529498 eV Total energy + Delta-G solvation = -4167.798473 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -39.59767 -38.35756 -38.06468 -37.11208 -35.83120 -35.52912 -34.78459 -34.09864 -31.90099 -30.11773 -27.94976 -27.14586 -24.66423 -24.32581 -21.23619 -20.61182 -19.52463 -19.29198 -18.67555 -17.57613 -17.26806 -16.97297 -16.30943 -16.03508 -15.87513 -15.67042 -15.20636 -14.68851 -14.54362 -14.49368 -14.24468 -13.78100 -13.46712 -13.18571 -12.76569 -12.58845 -12.53004 -12.08088 -12.03086 -11.98887 -11.91096 -11.69386 -11.61243 -11.52776 -11.05341 -11.04696 -10.50815 -10.45373 -10.40914 -9.74939 -9.63268 -9.47719 -9.15802 -8.82820 -8.73527 -8.06746 -6.56745 -4.01684 0.16609 0.46341 1.21883 1.56692 2.22552 3.04272 3.05782 3.19238 3.26353 3.33771 3.49574 3.73120 3.94597 4.14248 4.46724 4.60779 4.63114 4.92025 5.00675 5.11134 5.15503 5.40466 5.54525 5.67541 5.71193 5.78020 5.85976 6.00229 6.33705 6.46973 7.17586 7.41885 7.46031 7.81918 8.21532 8.91737 8.95457 9.15333 9.63411 10.51858 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.015549 B = 0.003674 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.290292 B = 7620.118914 C = 8076.287888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.031 3.969 3 Si 0.931 3.069 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.306 4.306 8 H 0.111 0.889 9 N -0.424 5.424 10 C 0.139 3.861 11 C 0.486 3.514 12 O -0.499 6.499 13 O -0.533 6.533 14 C 0.457 3.543 15 O -0.566 6.566 16 C 0.101 3.899 17 N -1.093 6.093 18 S 2.721 3.279 19 O -0.953 6.953 20 O -0.949 6.949 21 C -0.793 4.793 22 C 0.007 3.993 23 C -0.164 4.164 24 C -0.177 4.177 25 S 0.219 5.781 26 H 0.272 0.728 27 H 0.134 0.866 28 H 0.079 0.921 29 H 0.395 0.605 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.429 0.571 33 H 0.156 0.844 34 H 0.149 0.851 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.033 -12.292 -12.319 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.172 4.172 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.433 4.433 8 H 0.129 0.871 9 N -0.144 5.144 10 C 0.012 3.988 11 C 0.326 3.674 12 O -0.384 6.384 13 O -0.344 6.344 14 C 0.244 3.756 15 O -0.449 6.449 16 C -0.030 4.030 17 N -0.858 5.858 18 S 2.806 3.194 19 O -0.943 6.943 20 O -0.939 6.939 21 C -0.994 4.994 22 C -0.028 4.028 23 C -0.195 4.195 24 C -0.315 4.315 25 S 0.485 5.515 26 H 0.083 0.917 27 H 0.152 0.848 28 H 0.097 0.903 29 H 0.251 0.749 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.268 0.732 33 H 0.173 0.827 34 H 0.167 0.833 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -4.055 -11.996 -10.938 16.733 hybrid contribution 1.239 0.396 -0.614 1.438 sum -2.816 -11.600 -11.553 16.612 Atomic orbital electron populations 1.69802 1.06095 1.28077 1.47811 1.25273 0.95351 1.00116 0.96491 0.85781 0.79914 0.80694 0.77832 1.19078 1.20469 1.20786 1.19791 0.97757 0.82947 1.42841 0.87117 1.43417 1.19552 1.05217 1.46207 1.20785 0.81387 1.05247 0.91346 1.23746 0.83295 0.71191 0.89206 1.90649 1.85588 1.44586 1.17602 1.84495 1.17334 1.86301 1.46301 1.19668 0.87890 0.83864 0.84187 1.90521 1.25958 1.85720 1.42730 1.21116 0.95991 0.86534 0.99328 1.55094 1.28613 1.21365 1.80719 1.01185 0.73702 0.72150 0.72396 1.93590 1.59847 1.62102 1.78788 1.93614 1.41678 1.85974 1.72648 1.36076 1.08011 1.24127 1.31176 1.20069 0.99253 0.91606 0.91918 1.20429 0.96574 1.04991 0.97537 1.26283 0.99489 1.02766 1.02970 1.84383 1.12309 1.55301 0.99535 0.91711 0.84845 0.90322 0.74877 0.90168 0.88701 0.73159 0.82694 0.83332 0.80940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.03 9.25 55.50 0.51 -21.51 16 2 C 0.03 0.77 4.89 -17.47 -0.09 0.68 16 3 Si 0.93 19.63 29.60 -169.99 -5.03 14.60 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.31 -8.01 9.35 -14.93 -0.14 -8.15 16 8 H 0.11 3.04 7.36 -52.49 -0.39 2.65 16 9 N -0.42 -10.10 2.18 -116.10 -0.25 -10.35 16 10 C 0.14 2.81 4.97 -5.20 -0.03 2.78 16 11 C 0.49 10.31 5.87 36.00 0.21 10.52 16 12 O -0.50 -12.70 16.81 -18.75 -0.32 -13.01 16 13 O -0.53 -9.06 13.42 -39.24 -0.53 -9.58 16 14 C 0.46 10.52 7.49 -10.98 -0.08 10.44 16 15 O -0.57 -14.66 15.37 5.55 0.09 -14.58 16 16 C 0.10 1.79 5.31 -5.19 -0.03 1.77 16 17 N -1.09 -17.98 5.93 -11.65 -0.07 -18.05 16 18 S 2.72 41.63 5.88 -107.50 -0.63 41.00 16 19 O -0.95 -15.94 17.80 -57.17 -1.02 -16.96 16 20 O -0.95 -17.05 17.38 -57.17 -0.99 -18.04 16 21 C -0.79 -9.85 6.55 29.04 0.19 -9.66 16 22 C 0.01 0.07 9.84 -41.21 -0.41 -0.33 16 23 C -0.16 -1.38 10.18 -41.21 -0.42 -1.80 16 24 C -0.18 -1.43 11.23 29.04 0.33 -1.11 16 25 S 0.22 2.36 23.21 -107.50 -2.50 -0.14 16 26 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 27 H 0.13 2.78 6.34 -51.93 -0.33 2.45 16 28 H 0.08 1.22 6.69 -51.93 -0.35 0.87 16 29 H 0.39 5.18 9.10 45.56 0.41 5.60 16 30 H 0.08 1.12 7.41 -51.93 -0.39 0.74 16 31 H 0.10 1.73 7.13 -51.93 -0.37 1.36 16 32 H 0.43 7.12 7.70 -34.47 -0.27 6.85 16 33 H 0.16 1.38 8.06 -52.48 -0.42 0.95 16 34 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.17 0.86 8.06 -52.48 -0.42 0.43 16 LS Contribution 338.05 15.07 5.09 5.09 Total: -1.00 -35.88 338.05 -8.17 -44.05 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -2.07 Total: 12.34 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -0.46 Total: 5.14 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.19 Total: -49.91 kcal Atomic # 8 Polarization: -69.41 SS G_CDS: -2.77 Total: -72.18 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Atomic # 16 Polarization: 43.99 SS G_CDS: -3.13 Total: 40.86 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.88 -8.17 -44.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079491.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.564 kcal (2) G-P(sol) polarization free energy of solvation -35.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds