Wall clock time and date at job start Wed Apr 1 2020 05:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 120.00146 * 2 1 4 4 H 1.48500 * 109.47319 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47222 * 300.00081 * 3 2 1 6 6 H 1.48509 * 109.46704 * 59.99896 * 3 2 1 7 7 C 1.38951 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00596 * 201.13783 * 7 2 1 9 9 N 1.37099 * 119.99493 * 21.14402 * 7 2 1 10 10 C 1.46497 * 120.00382 * 16.24992 * 9 7 2 11 11 C 1.50696 * 109.47716 * 264.14875 * 10 9 7 12 12 O 1.20829 * 119.99715 * 0.02562 * 11 10 9 13 13 O 1.34224 * 120.00382 * 179.97438 * 11 10 9 14 14 C 1.34778 * 119.99695 * 196.25955 * 9 7 2 15 15 O 1.21289 * 120.00271 * 359.97438 * 14 9 7 16 16 C 1.50703 * 119.99760 * 179.97438 * 14 9 7 17 17 N 1.46506 * 109.46892 * 179.97438 * 16 14 9 18 18 S 1.65595 * 119.99757 * 164.99873 * 17 16 14 19 19 O 1.42104 * 106.40185 * 178.53726 * 18 17 16 20 20 O 1.42096 * 106.40555 * 311.45829 * 18 17 16 21 21 C 1.76202 * 107.21881 * 65.00282 * 18 17 16 22 22 C 1.33386 * 125.20787 * 89.99536 * 21 18 17 23 23 C 1.38422 * 114.92581 * 179.97438 * 22 21 18 24 24 C 1.33386 * 114.91844 * 0.02562 * 23 22 21 25 25 S 1.75884 * 125.20048 * 269.69252 * 21 18 17 26 26 H 0.97004 * 119.99807 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46955 * 24.15336 * 10 9 7 28 28 H 1.08999 * 109.47247 * 144.14234 * 10 9 7 29 29 H 0.96701 * 117.00294 * 180.02562 * 13 11 10 30 30 H 1.08997 * 109.47350 * 59.99849 * 16 14 9 31 31 H 1.08997 * 109.47198 * 299.99914 * 16 14 9 32 32 H 0.96999 * 119.99662 * 345.00152 * 17 16 14 33 33 H 1.08004 * 122.53866 * 359.95977 * 22 21 18 34 34 H 1.08001 * 122.54204 * 180.02562 * 23 22 21 35 35 H 1.08004 * 125.20292 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8893 2.3964 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0344 -1.2347 0.3378 9 7 1.3926 -2.3508 -0.4273 10 6 0.1549 -2.2707 -1.2069 11 6 -1.0290 -2.4275 -0.2878 12 8 -0.8565 -2.5892 0.8972 13 8 -2.2749 -2.3866 -0.7852 14 6 1.9254 -3.5527 -0.1303 15 8 2.9502 -3.6191 0.5149 16 6 1.2476 -4.8141 -0.6001 17 7 2.0174 -5.9776 -0.1529 18 16 1.3362 -7.4865 -0.1938 19 8 2.3336 -8.3895 0.2637 20 8 0.0581 -7.3665 0.4154 21 6 1.0458 -7.8819 -1.8862 22 6 1.9112 -8.5005 -2.6909 23 6 1.4615 -8.7055 -3.9838 24 6 0.2310 -8.2529 -4.2293 25 16 -0.4327 -7.5279 -2.7707 26 1 -0.4850 0.8401 -0.0004 27 1 0.1018 -1.3030 -1.7058 28 1 0.1434 -3.0651 -1.9530 29 1 -3.0023 -2.4916 -0.1566 30 1 1.1913 -4.8126 -1.6886 31 1 0.2412 -4.8622 -0.1844 32 1 2.9260 -5.8641 0.1672 33 1 2.8889 -8.8172 -2.3588 34 1 2.0615 -9.1948 -4.7369 35 1 -0.2814 -8.3252 -5.1773 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739079491.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:07 Heat of formation + Delta-G solvation = -170.249893 kcal Electronic energy + Delta-G solvation = -26696.613085 eV Core-core repulsion = 22527.529498 eV Total energy + Delta-G solvation = -4169.083587 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.29384 -40.05488 -38.85470 -38.33976 -37.18680 -37.12030 -36.44052 -35.63840 -33.77640 -30.88224 -29.65224 -28.71882 -26.10333 -25.42543 -22.86272 -21.56919 -21.16068 -20.23179 -19.75885 -19.06042 -18.87472 -18.63329 -17.70307 -17.49045 -17.33777 -16.87932 -16.53774 -16.23634 -16.06910 -15.86816 -15.69064 -15.34819 -14.35260 -14.21981 -14.09112 -13.86622 -13.62560 -13.57971 -13.53764 -13.35230 -13.29388 -13.28431 -13.21256 -12.68209 -12.57585 -12.38975 -12.13356 -12.09481 -11.81995 -11.54878 -10.97214 -10.87868 -10.54366 -10.34668 -9.91653 -9.57334 -8.45223 -5.97401 -0.85465 -0.46812 0.39782 0.86062 1.34443 1.45638 1.50833 1.59268 1.67073 1.81214 1.89786 2.25423 2.53252 2.56999 2.86072 3.06990 3.36538 3.58458 4.01612 4.05147 4.20645 4.31344 4.35933 4.43233 4.50516 4.75978 4.88845 4.92378 5.05259 5.33497 5.46318 5.81307 5.97551 5.99221 6.33946 7.05396 7.25089 7.44147 7.81651 8.61447 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.015549 B = 0.003674 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.290292 B = 7620.118914 C = 8076.287888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.003 3.997 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.259 1.259 6 H -0.287 1.287 7 C -0.341 4.341 8 H 0.083 0.917 9 N -0.436 5.436 10 C 0.133 3.867 11 C 0.492 3.508 12 O -0.550 6.550 13 O -0.516 6.516 14 C 0.445 3.555 15 O -0.608 6.608 16 C 0.110 3.890 17 N -1.099 6.099 18 S 2.736 3.264 19 O -0.974 6.974 20 O -0.983 6.983 21 C -0.818 4.818 22 C 0.016 3.984 23 C -0.171 4.171 24 C -0.148 4.148 25 S 0.191 5.809 26 H 0.276 0.724 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.414 0.586 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.427 0.573 33 H 0.166 0.834 34 H 0.183 0.817 35 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.815 -12.857 -15.585 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.199 4.199 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.184 1.184 6 H -0.214 1.214 7 C -0.468 4.468 8 H 0.101 0.899 9 N -0.155 5.155 10 C 0.008 3.992 11 C 0.334 3.666 12 O -0.439 6.439 13 O -0.328 6.328 14 C 0.234 3.766 15 O -0.494 6.494 16 C -0.020 4.020 17 N -0.862 5.862 18 S 2.826 3.174 19 O -0.965 6.965 20 O -0.974 6.974 21 C -1.023 5.023 22 C -0.020 4.020 23 C -0.201 4.201 24 C -0.286 4.286 25 S 0.456 5.544 26 H 0.086 0.914 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.274 0.726 30 H 0.142 0.858 31 H 0.109 0.891 32 H 0.265 0.735 33 H 0.183 0.817 34 H 0.200 0.800 35 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -4.888 -12.548 -14.194 19.565 hybrid contribution 1.407 0.487 0.289 1.517 sum -3.481 -12.060 -13.904 18.732 Atomic orbital electron populations 1.69879 1.06806 1.28868 1.47303 1.25963 0.96126 1.02342 0.95514 0.84887 0.78341 0.76961 0.78109 1.19667 1.18353 1.21367 1.19695 0.97335 0.84815 1.44957 0.89877 1.43561 1.20594 1.04905 1.46412 1.21031 0.79755 1.06899 0.91511 1.23887 0.84497 0.69769 0.88451 1.90639 1.86479 1.47109 1.19679 1.84428 1.16641 1.85364 1.46344 1.20508 0.87442 0.85203 0.83475 1.90481 1.27819 1.86626 1.44480 1.21060 0.94950 0.84246 1.01703 1.55108 1.28268 1.21472 1.81387 1.00275 0.72500 0.71320 0.73298 1.93553 1.60398 1.62314 1.80225 1.93565 1.42849 1.86223 1.74723 1.35392 1.09951 1.27437 1.29542 1.20477 0.99258 0.89678 0.92625 1.20754 0.97079 1.05119 0.97118 1.26753 0.98959 1.00079 1.02802 1.84495 1.12116 1.56547 1.01250 0.91374 0.85369 0.85273 0.72641 0.85809 0.89139 0.73491 0.81669 0.79981 0.77232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.35 9.25 21.66 0.20 -44.15 16 2 C 0.00 0.13 4.89 84.93 0.42 0.55 16 3 Si 0.99 40.36 29.60 68.60 2.03 42.39 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 6 H -0.29 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.34 -18.30 9.35 84.04 0.79 -17.52 16 8 H 0.08 4.81 7.36 -2.91 -0.02 4.79 16 9 N -0.44 -21.00 2.18 -639.61 -1.39 -22.39 16 10 C 0.13 5.25 4.97 85.63 0.43 5.68 16 11 C 0.49 20.47 5.87 71.23 0.42 20.89 16 12 O -0.55 -28.29 16.81 21.96 0.37 -27.92 16 13 O -0.52 -16.48 13.42 -51.36 -0.69 -17.17 16 14 C 0.45 20.92 7.49 87.66 0.66 21.57 16 15 O -0.61 -32.87 15.37 -3.06 -0.05 -32.92 16 16 C 0.11 3.90 5.31 85.63 0.45 4.36 16 17 N -1.10 -36.66 5.93 -190.78 -1.13 -37.79 16 18 S 2.74 84.34 5.88 -56.49 -0.33 84.01 16 19 O -0.97 -33.10 17.80 -128.00 -2.28 -35.38 16 20 O -0.98 -36.10 17.38 -128.00 -2.22 -38.33 16 21 C -0.82 -19.05 6.55 66.72 0.44 -18.62 16 22 C 0.02 0.29 9.84 21.22 0.21 0.50 16 23 C -0.17 -2.12 10.18 21.22 0.22 -1.91 16 24 C -0.15 -1.73 11.23 66.72 0.75 -0.98 16 25 S 0.19 3.66 23.21 -56.49 -1.31 2.34 16 26 H 0.28 13.00 8.31 -92.71 -0.77 12.23 16 27 H 0.13 5.20 6.34 -2.39 -0.02 5.19 16 28 H 0.13 3.65 6.69 -2.39 -0.02 3.63 16 29 H 0.41 10.06 9.10 -74.06 -0.67 9.39 16 30 H 0.12 3.20 7.41 -2.39 -0.02 3.19 16 31 H 0.09 3.31 7.13 -2.39 -0.02 3.29 16 32 H 0.43 14.72 7.70 -96.75 -0.75 13.97 16 33 H 0.17 2.57 8.06 -2.91 -0.02 2.54 16 34 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 35 H 0.21 0.84 8.06 -2.91 -0.02 0.82 16 Total: -1.00 -81.06 338.05 -2.27 -83.33 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: -0.23 Total: 29.44 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 4.77 Total: 14.52 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -2.32 Total: -104.33 kcal Atomic # 8 Polarization: -146.84 SS G_CDS: -4.87 Total: -151.71 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Atomic # 16 Polarization: 87.99 SS G_CDS: -1.64 Total: 86.35 kcal Total: -81.06 -2.27 -83.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079491.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.920 kcal (2) G-P(sol) polarization free energy of solvation -81.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds