Wall clock time and date at job start Wed Apr 1 2020 05:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00246 * 2 1 4 4 H 1.48497 * 109.47093 * 275.44342 * 3 2 1 5 5 H 1.48497 * 109.46944 * 35.43984 * 3 2 1 6 6 H 1.48495 * 109.47223 * 155.44358 * 3 2 1 7 7 C 1.38811 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00194 * 335.91333 * 7 2 1 9 9 N 1.36940 * 119.99471 * 155.90923 * 7 2 1 10 10 C 1.46497 * 120.00549 * 326.24232 * 9 7 2 11 11 C 1.50703 * 109.46890 * 275.72729 * 10 9 7 12 12 O 1.20819 * 120.00071 * 359.97438 * 11 10 9 13 13 O 1.34227 * 119.99829 * 180.02562 * 11 10 9 14 14 S 1.65604 * 119.99624 * 146.24003 * 9 7 2 15 15 O 1.42107 * 106.40214 * 156.45862 * 14 9 7 16 16 O 1.42104 * 106.40049 * 23.54166 * 14 9 7 17 17 C 1.76196 * 107.21940 * 269.99959 * 14 9 7 18 18 C 1.38227 * 120.01078 * 114.99792 * 17 14 9 19 19 C 1.38220 * 120.02193 * 180.27568 * 18 17 14 20 20 C 1.38271 * 120.05574 * 359.49314 * 19 18 17 21 21 N 1.47994 * 119.99049 * 180.25218 * 20 19 18 22 22 O 1.21806 * 120.00072 * 180.25233 * 21 20 19 23 23 O 1.21797 * 120.00277 * 0.25962 * 21 20 19 24 24 C 1.38180 * 120.02100 * 0.50779 * 20 19 18 25 25 C 1.38434 * 120.01601 * 295.02287 * 17 14 9 26 26 F 1.35107 * 120.02412 * 359.97438 * 25 17 14 27 27 H 0.97003 * 119.99240 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46906 * 35.72391 * 10 9 7 29 29 H 1.08994 * 109.47347 * 155.72667 * 10 9 7 30 30 H 0.96705 * 117.00075 * 179.97438 * 13 11 10 31 31 H 1.07997 * 119.98896 * 0.02562 * 18 17 14 32 32 H 1.08005 * 119.97456 * 179.72595 * 19 18 17 33 33 H 1.07994 * 120.01386 * 179.76117 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3828 2.1128 -1.3937 5 1 1.5100 2.6167 0.8118 6 1 3.6006 1.4096 0.5818 7 6 2.0102 -1.2022 0.0005 8 1 1.5407 -2.0966 0.3826 9 7 3.2901 -1.2540 -0.4835 10 6 3.6859 -0.3942 -1.6017 11 6 3.3048 -1.0539 -2.9020 12 8 2.7591 -2.1318 -2.8953 13 8 3.5725 -0.4444 -4.0675 14 16 4.3907 -2.2887 0.1951 15 8 5.3781 -2.5318 -0.7975 16 8 3.6395 -3.3240 0.8140 17 6 5.1967 -1.4136 1.4948 18 6 5.0386 -1.8229 2.8057 19 6 5.6662 -1.1332 3.8259 20 6 6.4612 -0.0396 3.5359 21 7 7.1369 0.6944 4.6289 22 8 7.8336 1.6605 4.3741 23 8 6.9966 0.3324 5.7834 24 6 6.6206 0.3713 2.2263 25 6 5.9881 -0.3158 1.2037 26 9 6.1434 0.0851 -0.0771 27 1 -0.4849 0.8401 0.0004 28 1 3.1775 0.5664 -1.5190 29 1 4.7642 -0.2380 -1.5760 30 1 3.3096 -0.9066 -4.8752 31 1 4.4213 -2.6793 3.0331 32 1 5.5386 -1.4509 4.8503 33 1 7.2385 1.2277 2.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739087097.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:18 Heat of formation + Delta-G solvation = -150.681697 kcal Electronic energy + Delta-G solvation = -29600.986538 eV Core-core repulsion = 24866.538316 eV Total energy + Delta-G solvation = -4734.448223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.040 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.36583 -42.32495 -39.79481 -39.13517 -36.71998 -36.54022 -36.23905 -35.38248 -34.85155 -32.72668 -32.21333 -31.08973 -28.33588 -26.92187 -24.79918 -23.37417 -22.86571 -21.70915 -19.71956 -19.02734 -18.90208 -18.05559 -17.83374 -17.70624 -17.59851 -17.00621 -16.65183 -16.41813 -16.32565 -15.75955 -15.70669 -15.13271 -14.54471 -14.39091 -13.98084 -13.56538 -13.39634 -13.23861 -13.02047 -12.92157 -12.42605 -12.18107 -11.71121 -11.68331 -11.39441 -11.37110 -11.27953 -11.19822 -11.12132 -11.07726 -10.78575 -10.58867 -10.47944 -10.27449 -9.97717 -9.56534 -9.30434 -8.81494 -7.24969 -4.56922 -0.51076 0.66946 0.89178 1.11136 1.19875 2.58788 2.65255 2.75958 2.83004 2.87469 3.30329 3.47686 3.67758 3.71945 4.13084 4.20038 4.35000 4.51277 4.68924 4.90601 5.05468 5.19542 5.22884 5.40046 5.45489 5.55443 5.63076 5.76231 6.05486 6.24997 6.31854 6.82965 6.86737 7.49319 7.69585 8.20484 8.29301 8.36153 9.78638 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.013908 B = 0.004861 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.722912 B = 5758.677532 C = 6127.861469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.059 3.941 3 Si 0.866 3.134 4 H -0.254 1.254 5 H -0.269 1.269 6 H -0.254 1.254 7 C -0.210 4.210 8 H 0.141 0.859 9 N -0.797 5.797 10 C 0.119 3.881 11 C 0.471 3.529 12 O -0.485 6.485 13 O -0.523 6.523 14 S 2.486 3.514 15 O -0.981 6.981 16 O -0.955 6.955 17 C -0.643 4.643 18 C -0.004 4.004 19 C -0.085 4.085 20 C 0.002 3.998 21 N 0.028 4.972 22 O -0.158 6.158 23 O -0.152 6.152 24 C -0.115 4.115 25 C 0.184 3.816 26 F -0.112 7.112 27 H 0.292 0.708 28 H 0.099 0.901 29 H 0.123 0.877 30 H 0.406 0.594 31 H 0.172 0.828 32 H 0.162 0.838 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.328 4.015 0.777 7.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.162 4.162 3 Si 0.690 3.310 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.365 4.365 8 H 0.158 0.842 9 N -0.617 5.617 10 C -0.009 4.009 11 C 0.308 3.692 12 O -0.369 6.369 13 O -0.335 6.335 14 S 2.587 3.413 15 O -0.970 6.970 16 O -0.944 6.944 17 C -0.716 4.716 18 C -0.023 4.023 19 C -0.105 4.105 20 C -0.081 4.081 21 N 0.549 4.451 22 O -0.374 6.374 23 O -0.369 6.369 24 C -0.135 4.135 25 C 0.162 3.838 26 F -0.090 7.090 27 H 0.103 0.897 28 H 0.117 0.883 29 H 0.141 0.859 30 H 0.264 0.736 31 H 0.189 0.811 32 H 0.180 0.820 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.398 2.665 0.439 6.945 hybrid contribution 0.568 1.522 0.141 1.631 sum 6.966 4.188 0.580 8.148 Atomic orbital electron populations 1.69811 1.06395 1.30231 1.35155 1.25949 0.95689 0.99764 0.94751 0.87078 0.81573 0.82595 0.79714 1.18034 1.19479 1.17749 1.19805 0.82585 0.97585 1.36491 0.84221 1.54155 1.18179 1.59114 1.30297 1.20928 1.02957 0.94540 0.82476 1.23726 0.75663 0.84275 0.85487 1.90707 1.37665 1.21246 1.87302 1.84503 1.78033 1.53974 1.17019 1.14514 0.72964 0.80548 0.73270 1.93399 1.60808 1.85822 1.56957 1.93380 1.69176 1.55299 1.76549 1.33252 1.08200 1.10128 1.20006 1.20958 0.94419 0.98008 0.88922 1.21288 0.94257 0.92362 1.02562 1.20841 1.02499 0.97889 0.86835 1.43554 0.99274 1.00215 1.02079 1.94543 1.35751 1.17288 1.89788 1.94536 1.66791 1.71014 1.04541 1.20837 1.01207 1.01669 0.89834 1.16586 0.95465 0.92891 0.78827 1.91538 1.93555 1.89601 1.34339 0.89651 0.88343 0.85917 0.73613 0.81074 0.82003 0.81667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.84 13.97 55.49 0.78 -17.07 16 2 C 0.06 1.29 5.32 -17.43 -0.09 1.20 16 3 Si 0.87 16.14 24.99 -169.99 -4.25 11.89 16 4 H -0.25 -4.42 6.67 56.52 0.38 -4.04 16 5 H -0.27 -4.99 7.11 56.52 0.40 -4.58 16 6 H -0.25 -4.53 7.11 56.52 0.40 -4.13 16 7 C -0.21 -4.77 9.44 -15.06 -0.14 -4.92 16 8 H 0.14 3.45 7.54 -52.49 -0.40 3.06 16 9 N -0.80 -17.06 2.07 -61.09 -0.13 -17.18 16 10 C 0.12 2.28 4.81 -5.19 -0.02 2.26 16 11 C 0.47 9.05 8.36 36.01 0.30 9.35 16 12 O -0.48 -10.89 17.07 -18.74 -0.32 -11.21 16 13 O -0.52 -7.66 13.42 -39.25 -0.53 -8.18 16 14 S 2.49 53.04 5.25 -107.50 -0.56 52.47 16 15 O -0.98 -22.35 16.39 -57.17 -0.94 -23.29 16 16 O -0.95 -22.16 15.86 -57.17 -0.91 -23.06 16 17 C -0.64 -11.50 5.91 -39.51 -0.23 -11.73 16 18 C 0.00 -0.06 9.55 -39.59 -0.38 -0.43 16 19 C -0.08 -1.15 9.55 -39.58 -0.38 -1.53 16 20 C 0.00 0.03 6.85 -79.97 -0.55 -0.51 16 21 N 0.03 0.42 4.45 33.95 0.15 0.58 16 22 O -0.16 -2.41 18.45 -29.46 -0.54 -2.95 16 23 O -0.15 -2.26 18.45 -29.46 -0.54 -2.81 16 24 C -0.12 -1.69 9.54 -39.51 -0.38 -2.07 16 25 C 0.18 3.07 7.21 -39.42 -0.28 2.79 16 26 F -0.11 -1.86 13.76 2.25 0.03 -1.83 16 27 H 0.29 6.01 8.31 -40.82 -0.34 5.67 16 28 H 0.10 1.80 2.68 -51.93 -0.14 1.66 16 29 H 0.12 2.12 5.08 -51.93 -0.26 1.85 16 30 H 0.41 3.96 9.10 45.56 0.41 4.37 16 31 H 0.17 2.36 7.33 -52.49 -0.38 1.98 16 32 H 0.16 1.72 7.61 -52.48 -0.40 1.33 16 33 H 0.17 2.04 7.61 -52.49 -0.40 1.64 16 LS Contribution 316.81 15.07 4.77 4.77 Total: -1.00 -28.79 316.81 -5.87 -34.66 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -0.73 Total: 8.80 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -2.16 Total: -5.60 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.80 Total: -33.68 kcal Atomic # 8 Polarization: -67.72 SS G_CDS: -3.78 Total: -71.50 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.03 Total: -1.83 kcal Atomic # 14 Polarization: 16.14 SS G_CDS: -4.25 Total: 11.89 kcal Atomic # 16 Polarization: 53.04 SS G_CDS: -0.56 Total: 52.47 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.79 -5.87 -34.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087097.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.018 kcal (2) G-P(sol) polarization free energy of solvation -28.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds