Wall clock time and date at job start Wed Apr 1 2020 05:25:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86800 * 120.00246 * 2 1
4 4 H 1.48497 * 109.47093 * 275.44342 * 3 2 1
5 5 H 1.48497 * 109.46944 * 35.43984 * 3 2 1
6 6 H 1.48495 * 109.47223 * 155.44358 * 3 2 1
7 7 C 1.38811 * 119.99624 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00194 * 335.91333 * 7 2 1
9 9 N 1.36940 * 119.99471 * 155.90923 * 7 2 1
10 10 C 1.46497 * 120.00549 * 326.24232 * 9 7 2
11 11 C 1.50703 * 109.46890 * 275.72729 * 10 9 7
12 12 O 1.20819 * 120.00071 * 359.97438 * 11 10 9
13 13 O 1.34227 * 119.99829 * 180.02562 * 11 10 9
14 14 S 1.65604 * 119.99624 * 146.24003 * 9 7 2
15 15 O 1.42107 * 106.40214 * 156.45862 * 14 9 7
16 16 O 1.42104 * 106.40049 * 23.54166 * 14 9 7
17 17 C 1.76196 * 107.21940 * 269.99959 * 14 9 7
18 18 C 1.38227 * 120.01078 * 114.99792 * 17 14 9
19 19 C 1.38220 * 120.02193 * 180.27568 * 18 17 14
20 20 C 1.38271 * 120.05574 * 359.49314 * 19 18 17
21 21 N 1.47994 * 119.99049 * 180.25218 * 20 19 18
22 22 O 1.21806 * 120.00072 * 180.25233 * 21 20 19
23 23 O 1.21797 * 120.00277 * 0.25962 * 21 20 19
24 24 C 1.38180 * 120.02100 * 0.50779 * 20 19 18
25 25 C 1.38434 * 120.01601 * 295.02287 * 17 14 9
26 26 F 1.35107 * 120.02412 * 359.97438 * 25 17 14
27 27 H 0.97003 * 119.99240 * 359.97438 * 1 2 3
28 28 H 1.08997 * 109.46906 * 35.72391 * 10 9 7
29 29 H 1.08994 * 109.47347 * 155.72667 * 10 9 7
30 30 H 0.96705 * 117.00075 * 179.97438 * 13 11 10
31 31 H 1.07997 * 119.98896 * 0.02562 * 18 17 14
32 32 H 1.08005 * 119.97456 * 179.72595 * 19 18 17
33 33 H 1.07994 * 120.01386 * 179.76117 * 24 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.3828 2.1128 -1.3937
5 1 1.5100 2.6167 0.8118
6 1 3.6006 1.4096 0.5818
7 6 2.0102 -1.2022 0.0005
8 1 1.5407 -2.0966 0.3826
9 7 3.2901 -1.2540 -0.4835
10 6 3.6859 -0.3942 -1.6017
11 6 3.3048 -1.0539 -2.9020
12 8 2.7591 -2.1318 -2.8953
13 8 3.5725 -0.4444 -4.0675
14 16 4.3907 -2.2887 0.1951
15 8 5.3781 -2.5318 -0.7975
16 8 3.6395 -3.3240 0.8140
17 6 5.1967 -1.4136 1.4948
18 6 5.0386 -1.8229 2.8057
19 6 5.6662 -1.1332 3.8259
20 6 6.4612 -0.0396 3.5359
21 7 7.1369 0.6944 4.6289
22 8 7.8336 1.6605 4.3741
23 8 6.9966 0.3324 5.7834
24 6 6.6206 0.3713 2.2263
25 6 5.9881 -0.3158 1.2037
26 9 6.1434 0.0851 -0.0771
27 1 -0.4849 0.8401 0.0004
28 1 3.1775 0.5664 -1.5190
29 1 4.7642 -0.2380 -1.5760
30 1 3.3096 -0.9066 -4.8752
31 1 4.4213 -2.6793 3.0331
32 1 5.5386 -1.4509 4.8503
33 1 7.2385 1.2277 2.0002
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000739087097.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:25:18
Heat of formation + Delta-G solvation = -150.681697 kcal
Electronic energy + Delta-G solvation = -29600.986538 eV
Core-core repulsion = 24866.538316 eV
Total energy + Delta-G solvation = -4734.448223 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 348.040 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-49.36583 -42.32495 -39.79481 -39.13517 -36.71998 -36.54022 -36.23905 -35.38248
-34.85155 -32.72668 -32.21333 -31.08973 -28.33588 -26.92187 -24.79918 -23.37417
-22.86571 -21.70915 -19.71956 -19.02734 -18.90208 -18.05559 -17.83374 -17.70624
-17.59851 -17.00621 -16.65183 -16.41813 -16.32565 -15.75955 -15.70669 -15.13271
-14.54471 -14.39091 -13.98084 -13.56538 -13.39634 -13.23861 -13.02047 -12.92157
-12.42605 -12.18107 -11.71121 -11.68331 -11.39441 -11.37110 -11.27953 -11.19822
-11.12132 -11.07726 -10.78575 -10.58867 -10.47944 -10.27449 -9.97717 -9.56534
-9.30434 -8.81494 -7.24969 -4.56922 -0.51076 0.66946 0.89178 1.11136
1.19875 2.58788 2.65255 2.75958 2.83004 2.87469 3.30329 3.47686
3.67758 3.71945 4.13084 4.20038 4.35000 4.51277 4.68924 4.90601
5.05468 5.19542 5.22884 5.40046 5.45489 5.55443 5.63076 5.76231
6.05486 6.24997 6.31854 6.82965 6.86737 7.49319 7.69585 8.20484
8.29301 8.36153 9.78638
Molecular weight = 348.04amu
Principal moments of inertia in cm(-1)
A = 0.013908 B = 0.004861 C = 0.004568
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2012.722912 B = 5758.677532 C = 6127.861469
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.782 5.782
2 C 0.059 3.941
3 Si 0.866 3.134
4 H -0.254 1.254
5 H -0.269 1.269
6 H -0.254 1.254
7 C -0.210 4.210
8 H 0.141 0.859
9 N -0.797 5.797
10 C 0.119 3.881
11 C 0.471 3.529
12 O -0.485 6.485
13 O -0.523 6.523
14 S 2.486 3.514
15 O -0.981 6.981
16 O -0.955 6.955
17 C -0.643 4.643
18 C -0.004 4.004
19 C -0.085 4.085
20 C 0.002 3.998
21 N 0.028 4.972
22 O -0.158 6.158
23 O -0.152 6.152
24 C -0.115 4.115
25 C 0.184 3.816
26 F -0.112 7.112
27 H 0.292 0.708
28 H 0.099 0.901
29 H 0.123 0.877
30 H 0.406 0.594
31 H 0.172 0.828
32 H 0.162 0.838
33 H 0.166 0.834
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.328 4.015 0.777 7.534
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.416 5.416
2 C -0.162 4.162
3 Si 0.690 3.310
4 H -0.180 1.180
5 H -0.195 1.195
6 H -0.177 1.177
7 C -0.365 4.365
8 H 0.158 0.842
9 N -0.617 5.617
10 C -0.009 4.009
11 C 0.308 3.692
12 O -0.369 6.369
13 O -0.335 6.335
14 S 2.587 3.413
15 O -0.970 6.970
16 O -0.944 6.944
17 C -0.716 4.716
18 C -0.023 4.023
19 C -0.105 4.105
20 C -0.081 4.081
21 N 0.549 4.451
22 O -0.374 6.374
23 O -0.369 6.369
24 C -0.135 4.135
25 C 0.162 3.838
26 F -0.090 7.090
27 H 0.103 0.897
28 H 0.117 0.883
29 H 0.141 0.859
30 H 0.264 0.736
31 H 0.189 0.811
32 H 0.180 0.820
33 H 0.183 0.817
Dipole moment (debyes) X Y Z Total
from point charges 6.398 2.665 0.439 6.945
hybrid contribution 0.568 1.522 0.141 1.631
sum 6.966 4.188 0.580 8.148
Atomic orbital electron populations
1.69811 1.06395 1.30231 1.35155 1.25949 0.95689 0.99764 0.94751
0.87078 0.81573 0.82595 0.79714 1.18034 1.19479 1.17749 1.19805
0.82585 0.97585 1.36491 0.84221 1.54155 1.18179 1.59114 1.30297
1.20928 1.02957 0.94540 0.82476 1.23726 0.75663 0.84275 0.85487
1.90707 1.37665 1.21246 1.87302 1.84503 1.78033 1.53974 1.17019
1.14514 0.72964 0.80548 0.73270 1.93399 1.60808 1.85822 1.56957
1.93380 1.69176 1.55299 1.76549 1.33252 1.08200 1.10128 1.20006
1.20958 0.94419 0.98008 0.88922 1.21288 0.94257 0.92362 1.02562
1.20841 1.02499 0.97889 0.86835 1.43554 0.99274 1.00215 1.02079
1.94543 1.35751 1.17288 1.89788 1.94536 1.66791 1.71014 1.04541
1.20837 1.01207 1.01669 0.89834 1.16586 0.95465 0.92891 0.78827
1.91538 1.93555 1.89601 1.34339 0.89651 0.88343 0.85917 0.73613
0.81074 0.82003 0.81667
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 24.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -17.84 13.97 55.49 0.78 -17.07 16
2 C 0.06 1.29 5.32 -17.43 -0.09 1.20 16
3 Si 0.87 16.14 24.99 -169.99 -4.25 11.89 16
4 H -0.25 -4.42 6.67 56.52 0.38 -4.04 16
5 H -0.27 -4.99 7.11 56.52 0.40 -4.58 16
6 H -0.25 -4.53 7.11 56.52 0.40 -4.13 16
7 C -0.21 -4.77 9.44 -15.06 -0.14 -4.92 16
8 H 0.14 3.45 7.54 -52.49 -0.40 3.06 16
9 N -0.80 -17.06 2.07 -61.09 -0.13 -17.18 16
10 C 0.12 2.28 4.81 -5.19 -0.02 2.26 16
11 C 0.47 9.05 8.36 36.01 0.30 9.35 16
12 O -0.48 -10.89 17.07 -18.74 -0.32 -11.21 16
13 O -0.52 -7.66 13.42 -39.25 -0.53 -8.18 16
14 S 2.49 53.04 5.25 -107.50 -0.56 52.47 16
15 O -0.98 -22.35 16.39 -57.17 -0.94 -23.29 16
16 O -0.95 -22.16 15.86 -57.17 -0.91 -23.06 16
17 C -0.64 -11.50 5.91 -39.51 -0.23 -11.73 16
18 C 0.00 -0.06 9.55 -39.59 -0.38 -0.43 16
19 C -0.08 -1.15 9.55 -39.58 -0.38 -1.53 16
20 C 0.00 0.03 6.85 -79.97 -0.55 -0.51 16
21 N 0.03 0.42 4.45 33.95 0.15 0.58 16
22 O -0.16 -2.41 18.45 -29.46 -0.54 -2.95 16
23 O -0.15 -2.26 18.45 -29.46 -0.54 -2.81 16
24 C -0.12 -1.69 9.54 -39.51 -0.38 -2.07 16
25 C 0.18 3.07 7.21 -39.42 -0.28 2.79 16
26 F -0.11 -1.86 13.76 2.25 0.03 -1.83 16
27 H 0.29 6.01 8.31 -40.82 -0.34 5.67 16
28 H 0.10 1.80 2.68 -51.93 -0.14 1.66 16
29 H 0.12 2.12 5.08 -51.93 -0.26 1.85 16
30 H 0.41 3.96 9.10 45.56 0.41 4.37 16
31 H 0.17 2.36 7.33 -52.49 -0.38 1.98 16
32 H 0.16 1.72 7.61 -52.48 -0.40 1.33 16
33 H 0.17 2.04 7.61 -52.49 -0.40 1.64 16
LS Contribution 316.81 15.07 4.77 4.77
Total: -1.00 -28.79 316.81 -5.87 -34.66
By element:
Atomic # 1 Polarization: 9.52 SS G_CDS: -0.73 Total: 8.80 kcal
Atomic # 6 Polarization: -3.44 SS G_CDS: -2.16 Total: -5.60 kcal
Atomic # 7 Polarization: -34.48 SS G_CDS: 0.80 Total: -33.68 kcal
Atomic # 8 Polarization: -67.72 SS G_CDS: -3.78 Total: -71.50 kcal
Atomic # 9 Polarization: -1.86 SS G_CDS: 0.03 Total: -1.83 kcal
Atomic # 14 Polarization: 16.14 SS G_CDS: -4.25 Total: 11.89 kcal
Atomic # 16 Polarization: 53.04 SS G_CDS: -0.56 Total: 52.47 kcal
Total LS contribution 4.77 Total: 4.77 kcal
Total: -28.79 -5.87 -34.66 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000739087097.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -116.018 kcal
(2) G-P(sol) polarization free energy of solvation -28.794 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.813 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.663 kcal
(6) G-S(sol) free energy of system = (1) + (5) -150.682 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds