Wall clock time and date at job start Wed Apr 1 2020 05:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00246 * 2 1 4 4 H 1.48497 * 109.47093 * 275.44342 * 3 2 1 5 5 H 1.48497 * 109.46944 * 35.43984 * 3 2 1 6 6 H 1.48495 * 109.47223 * 155.44358 * 3 2 1 7 7 C 1.38811 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00194 * 335.91333 * 7 2 1 9 9 N 1.36940 * 119.99471 * 155.90923 * 7 2 1 10 10 C 1.46497 * 120.00549 * 326.24232 * 9 7 2 11 11 C 1.50703 * 109.46890 * 275.72729 * 10 9 7 12 12 O 1.20819 * 120.00071 * 359.97438 * 11 10 9 13 13 O 1.34227 * 119.99829 * 180.02562 * 11 10 9 14 14 S 1.65604 * 119.99624 * 146.24003 * 9 7 2 15 15 O 1.42107 * 106.40214 * 156.45862 * 14 9 7 16 16 O 1.42104 * 106.40049 * 23.54166 * 14 9 7 17 17 C 1.76196 * 107.21940 * 269.99959 * 14 9 7 18 18 C 1.38227 * 120.01078 * 114.99792 * 17 14 9 19 19 C 1.38220 * 120.02193 * 180.27568 * 18 17 14 20 20 C 1.38271 * 120.05574 * 359.49314 * 19 18 17 21 21 N 1.47994 * 119.99049 * 180.25218 * 20 19 18 22 22 O 1.21806 * 120.00072 * 180.25233 * 21 20 19 23 23 O 1.21797 * 120.00277 * 0.25962 * 21 20 19 24 24 C 1.38180 * 120.02100 * 0.50779 * 20 19 18 25 25 C 1.38434 * 120.01601 * 295.02287 * 17 14 9 26 26 F 1.35107 * 120.02412 * 359.97438 * 25 17 14 27 27 H 0.97003 * 119.99240 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46906 * 35.72391 * 10 9 7 29 29 H 1.08994 * 109.47347 * 155.72667 * 10 9 7 30 30 H 0.96705 * 117.00075 * 179.97438 * 13 11 10 31 31 H 1.07997 * 119.98896 * 0.02562 * 18 17 14 32 32 H 1.08005 * 119.97456 * 179.72595 * 19 18 17 33 33 H 1.07994 * 120.01386 * 179.76117 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3828 2.1128 -1.3937 5 1 1.5100 2.6167 0.8118 6 1 3.6006 1.4096 0.5818 7 6 2.0102 -1.2022 0.0005 8 1 1.5407 -2.0966 0.3826 9 7 3.2901 -1.2540 -0.4835 10 6 3.6859 -0.3942 -1.6017 11 6 3.3048 -1.0539 -2.9020 12 8 2.7591 -2.1318 -2.8953 13 8 3.5725 -0.4444 -4.0675 14 16 4.3907 -2.2887 0.1951 15 8 5.3781 -2.5318 -0.7975 16 8 3.6395 -3.3240 0.8140 17 6 5.1967 -1.4136 1.4948 18 6 5.0386 -1.8229 2.8057 19 6 5.6662 -1.1332 3.8259 20 6 6.4612 -0.0396 3.5359 21 7 7.1369 0.6944 4.6289 22 8 7.8336 1.6605 4.3741 23 8 6.9966 0.3324 5.7834 24 6 6.6206 0.3713 2.2263 25 6 5.9881 -0.3158 1.2037 26 9 6.1434 0.0851 -0.0771 27 1 -0.4849 0.8401 0.0004 28 1 3.1775 0.5664 -1.5190 29 1 4.7642 -0.2380 -1.5760 30 1 3.3096 -0.9066 -4.8752 31 1 4.4213 -2.6793 3.0331 32 1 5.5386 -1.4509 4.8503 33 1 7.2385 1.2277 2.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739087097.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:17 Heat of formation + Delta-G solvation = -171.472708 kcal Electronic energy + Delta-G solvation = -29601.888104 eV Core-core repulsion = 24866.538316 eV Total energy + Delta-G solvation = -4735.349789 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.040 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -50.67312 -43.50481 -41.26882 -40.38831 -38.11106 -38.02235 -37.89720 -36.86257 -36.73331 -34.29300 -33.50396 -32.31858 -29.86781 -28.18088 -26.43478 -24.61474 -24.14217 -23.17151 -20.93516 -20.66206 -20.09891 -19.61232 -19.30437 -19.17568 -18.87549 -18.49025 -17.94058 -17.85040 -17.74988 -17.23706 -17.09075 -16.62362 -16.12065 -15.79693 -15.27263 -15.07738 -14.83715 -14.71310 -14.42622 -14.22078 -13.90935 -13.38701 -13.23818 -13.13656 -13.02174 -12.88135 -12.81930 -12.61119 -12.58796 -12.44858 -12.39049 -12.12803 -11.96835 -11.84448 -11.31524 -11.08250 -10.52658 -10.41242 -8.79652 -6.28320 -1.75225 -0.72167 -0.54139 -0.16721 -0.03384 1.13071 1.16804 1.27575 1.38174 1.58122 1.87151 2.00296 2.14558 2.43664 2.58924 2.81839 2.91630 3.17817 3.34922 3.61597 3.71784 3.78914 3.89991 3.96068 4.20784 4.24948 4.40179 4.47543 4.74204 4.83413 5.11132 5.30476 5.60367 5.99583 6.29862 6.63759 6.67898 7.01955 8.30441 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.013908 B = 0.004861 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.722912 B = 5758.677532 C = 6127.861469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.035 3.965 3 Si 0.900 3.100 4 H -0.233 1.233 5 H -0.269 1.269 6 H -0.239 1.239 7 C -0.258 4.258 8 H 0.097 0.903 9 N -0.812 5.812 10 C 0.106 3.894 11 C 0.471 3.529 12 O -0.528 6.528 13 O -0.505 6.505 14 S 2.543 3.457 15 O -0.994 6.994 16 O -0.977 6.977 17 C -0.668 4.668 18 C 0.000 4.000 19 C -0.068 4.068 20 C 0.007 3.993 21 N 0.027 4.973 22 O -0.161 6.161 23 O -0.142 6.142 24 C -0.106 4.106 25 C 0.177 3.823 26 F -0.112 7.112 27 H 0.295 0.705 28 H 0.111 0.889 29 H 0.142 0.858 30 H 0.428 0.572 31 H 0.184 0.816 32 H 0.197 0.803 33 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.313 5.501 1.908 10.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.180 4.180 3 Si 0.722 3.278 4 H -0.158 1.158 5 H -0.194 1.194 6 H -0.162 1.162 7 C -0.407 4.407 8 H 0.115 0.885 9 N -0.636 5.636 10 C -0.021 4.021 11 C 0.311 3.689 12 O -0.416 6.416 13 O -0.319 6.319 14 S 2.645 3.355 15 O -0.984 6.984 16 O -0.967 6.967 17 C -0.748 4.748 18 C -0.020 4.020 19 C -0.088 4.088 20 C -0.076 4.076 21 N 0.548 4.452 22 O -0.376 6.376 23 O -0.362 6.362 24 C -0.126 4.126 25 C 0.155 3.845 26 F -0.091 7.091 27 H 0.106 0.894 28 H 0.128 0.872 29 H 0.160 0.840 30 H 0.290 0.710 31 H 0.201 0.799 32 H 0.214 0.786 33 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 9.286 4.187 1.480 10.294 hybrid contribution 0.071 0.931 -0.058 0.935 sum 9.357 5.118 1.422 10.760 Atomic orbital electron populations 1.69881 1.07803 1.30988 1.38875 1.26307 0.95890 1.02001 0.93840 0.86520 0.81108 0.79186 0.81008 1.15777 1.19427 1.16219 1.19129 0.84369 0.97015 1.40157 0.88533 1.53481 1.18153 1.59842 1.32097 1.21277 1.04142 0.94769 0.81927 1.23853 0.74727 0.83643 0.86680 1.90695 1.39728 1.23143 1.88054 1.84442 1.77138 1.53358 1.16947 1.10822 0.72508 0.78839 0.73382 1.93407 1.61013 1.85830 1.58138 1.93384 1.70172 1.55850 1.77326 1.32592 1.11242 1.11115 1.19809 1.21167 0.94168 0.98418 0.88215 1.21575 0.92350 0.91179 1.03656 1.21037 1.01930 0.97710 0.86919 1.43562 0.99317 1.00225 1.02074 1.94561 1.35873 1.17326 1.89792 1.94548 1.66432 1.70790 1.04437 1.21022 1.00465 1.01882 0.89222 1.16660 0.95648 0.92765 0.79395 1.91535 1.93549 1.89539 1.34430 0.89377 0.87167 0.84019 0.70957 0.79907 0.78583 0.79065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -40.88 13.97 21.65 0.30 -40.58 16 2 C 0.03 1.59 5.32 84.86 0.45 2.04 16 3 Si 0.90 32.46 24.99 68.60 1.71 34.18 16 4 H -0.23 -7.49 6.67 99.48 0.66 -6.83 16 5 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 6 H -0.24 -7.91 7.11 99.48 0.71 -7.21 16 7 C -0.26 -12.41 9.44 84.03 0.79 -11.61 16 8 H 0.10 5.26 7.54 -2.91 -0.02 5.24 16 9 N -0.81 -35.24 2.07 -347.19 -0.72 -35.96 16 10 C 0.11 4.01 4.81 85.63 0.41 4.42 16 11 C 0.47 18.02 8.36 71.24 0.60 18.62 16 12 O -0.53 -24.35 17.07 21.99 0.38 -23.97 16 13 O -0.51 -13.94 13.42 -51.39 -0.69 -14.63 16 14 S 2.54 107.66 5.25 -56.49 -0.30 107.37 16 15 O -0.99 -44.37 16.39 -128.00 -2.10 -46.47 16 16 O -0.98 -46.05 15.86 -128.00 -2.03 -48.08 16 17 C -0.67 -22.49 5.91 22.31 0.13 -22.36 16 18 C 0.00 -0.01 9.55 22.26 0.21 0.20 16 19 C -0.07 -1.55 9.55 22.27 0.21 -1.34 16 20 C 0.01 0.17 6.85 36.37 0.25 0.42 16 21 N 0.03 0.68 4.45 -46.49 -0.21 0.48 16 22 O -0.16 -4.25 18.45 18.88 0.35 -3.91 16 23 O -0.14 -3.64 18.45 18.89 0.35 -3.29 16 24 C -0.11 -2.67 9.54 22.31 0.21 -2.45 16 25 C 0.18 5.36 7.21 22.37 0.16 5.53 16 26 F -0.11 -3.40 13.76 44.97 0.62 -2.78 16 27 H 0.30 12.94 8.31 -92.71 -0.77 12.17 16 28 H 0.11 3.89 2.68 -2.39 -0.01 3.89 16 29 H 0.14 4.65 5.08 -2.39 -0.01 4.64 16 30 H 0.43 7.60 9.10 -74.05 -0.67 6.92 16 31 H 0.18 4.64 7.33 -2.91 -0.02 4.62 16 32 H 0.20 3.15 7.61 -2.91 -0.02 3.13 16 33 H 0.19 3.80 7.61 -2.91 -0.02 3.78 16 Total: -1.00 -64.32 316.81 1.63 -62.69 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.53 Total: 21.50 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 3.43 Total: -6.54 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -0.62 Total: -76.06 kcal Atomic # 8 Polarization: -136.60 SS G_CDS: -3.75 Total: -140.35 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.62 Total: -2.78 kcal Atomic # 14 Polarization: 32.46 SS G_CDS: 1.71 Total: 34.18 kcal Atomic # 16 Polarization: 107.66 SS G_CDS: -0.30 Total: 107.37 kcal Total: -64.32 1.63 -62.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087097.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.779 kcal (2) G-P(sol) polarization free energy of solvation -64.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds