Wall clock time and date at job start Wed Apr 1 2020 05:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99749 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46948 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00165 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99926 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00033 * 179.97438 * 11 10 9 14 14 O 1.45206 * 109.47021 * 180.02562 * 13 11 10 15 15 C 1.34899 * 116.99849 * 180.02562 * 14 13 11 16 16 O 1.21629 * 120.00021 * 0.02562 * 15 14 13 17 17 C 1.46392 * 119.99962 * 180.02562 * 15 14 13 18 18 C 1.36748 * 125.46236 * 179.97438 * 17 15 14 19 19 C 1.37421 * 113.28599 * 180.02562 * 18 17 15 20 20 C 1.33852 * 115.10941 * 359.97438 * 19 18 17 21 21 S 1.76200 * 124.51771 * 180.02562 * 20 19 18 22 22 N 1.65604 * 107.21981 * 89.99655 * 21 20 19 23 23 O 1.42097 * 106.40438 * 203.54011 * 21 20 19 24 24 O 1.42104 * 106.40293 * 336.45941 * 21 20 19 25 25 S 1.70616 * 110.96665 * 359.72430 * 20 19 18 26 26 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47718 * 59.99471 * 9 7 2 28 28 H 1.09004 * 109.47331 * 299.99598 * 9 7 2 29 29 H 0.97004 * 120.00363 * 359.97438 * 10 9 7 30 30 H 1.09004 * 109.47103 * 60.00241 * 13 11 10 31 31 H 1.09000 * 109.47247 * 300.00119 * 13 11 10 32 32 H 1.07999 * 123.35891 * 359.97438 * 18 17 15 33 33 H 1.08003 * 122.44045 * 179.97438 * 19 18 17 34 34 H 0.96996 * 119.99898 * 149.99421 * 22 21 20 35 35 H 0.97000 * 120.00119 * 330.01088 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 1.7538 -4.8834 -0.0033 12 8 0.5613 -5.1050 -0.0035 13 6 2.7330 -6.0288 -0.0049 14 8 2.0070 -7.2863 -0.0059 15 6 2.7417 -8.4177 -0.0069 16 8 3.9564 -8.3540 -0.0064 17 6 2.0771 -9.7220 -0.0085 18 6 2.7094 -10.9346 -0.0101 19 6 1.8413 -11.9999 -0.0119 20 6 0.5429 -11.6746 -0.0113 21 16 -0.7785 -12.8402 -0.0127 22 7 -1.1459 -13.1666 1.5687 23 8 -1.9062 -12.1677 -0.5561 24 8 -0.2527 -14.0421 -0.5588 25 16 0.3379 -9.9808 -0.0007 26 1 -0.4849 0.8400 0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6240 -2.5575 0.8881 29 1 3.1567 -3.4355 -0.0029 30 1 3.3604 -5.9718 0.8847 31 1 3.3591 -5.9704 -0.8953 32 1 3.7838 -11.0441 -0.0107 33 1 2.1819 -13.0248 -0.0137 34 1 -2.0525 -13.4066 1.8164 35 1 -0.4545 -13.1177 2.2473 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745252160.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:01 Heat of formation + Delta-G solvation = -160.165934 kcal Electronic energy + Delta-G solvation = -24264.890716 eV Core-core repulsion = 20096.244402 eV Total energy + Delta-G solvation = -4168.646314 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.79054 -38.97380 -38.31638 -37.57795 -36.51603 -36.34951 -34.33552 -33.74465 -32.47995 -31.19227 -29.29489 -27.00803 -25.88489 -23.02245 -22.26536 -21.03990 -20.09515 -19.71906 -19.50270 -18.06063 -17.87430 -17.59424 -16.92711 -16.89424 -16.59834 -16.01966 -15.65539 -15.53177 -15.14272 -14.89523 -14.46036 -14.09136 -13.89174 -13.23665 -13.16120 -13.08159 -12.72075 -12.70019 -12.57946 -12.49398 -12.08509 -12.04347 -11.87614 -11.47816 -11.10180 -11.05866 -11.03578 -11.00130 -10.89805 -10.39099 -9.98427 -9.49519 -9.30130 -9.19600 -8.83678 -8.07023 -6.24056 -4.31821 -0.63091 -0.14995 0.77747 1.17407 1.44579 2.03695 2.37021 2.60777 3.05795 3.10374 3.20084 3.26422 3.28548 3.78393 4.15859 4.27505 4.43441 4.50661 4.72758 4.93252 5.06943 5.07558 5.12599 5.20963 5.31121 5.44252 5.58390 5.94724 6.48856 7.13980 7.19067 7.28122 7.39509 7.55111 7.86623 8.41044 8.63905 8.87450 9.34675 10.85998 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.025379 B = 0.001867 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.989007 B =14995.924590 C =15905.383033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.704 5.704 11 C 0.499 3.501 12 O -0.532 6.532 13 C 0.050 3.950 14 O -0.325 6.325 15 C 0.534 3.466 16 O -0.487 6.487 17 C -0.218 4.218 18 C -0.078 4.078 19 C -0.015 4.015 20 C -0.836 4.836 21 S 2.730 3.270 22 N -1.245 6.245 23 O -0.951 6.951 24 O -0.949 6.949 25 S 0.409 5.591 26 H 0.267 0.733 27 H 0.030 0.970 28 H 0.030 0.970 29 H 0.394 0.606 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.424 0.576 35 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.527 -27.522 3.896 28.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.355 5.355 11 C 0.282 3.718 12 O -0.410 6.410 13 C -0.027 4.027 14 O -0.240 6.240 15 C 0.376 3.624 16 O -0.376 6.376 17 C -0.340 4.340 18 C -0.112 4.112 19 C -0.053 4.053 20 C -1.039 5.039 21 S 2.812 3.188 22 N -0.921 5.921 23 O -0.941 6.941 24 O -0.938 6.938 25 S 0.683 5.317 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.226 0.774 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.184 0.816 33 H 0.182 0.818 34 H 0.255 0.745 35 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 1.138 -26.749 2.965 26.937 hybrid contribution 2.858 0.515 0.672 2.981 sum 3.996 -26.234 3.636 26.785 Atomic orbital electron populations 1.69968 1.06121 1.27483 1.48519 1.24959 0.94948 0.99528 0.94565 0.86379 0.79581 0.82461 0.78275 1.20407 1.20957 1.19724 1.21194 0.93330 0.90257 1.53710 0.91746 1.19199 0.88125 0.81454 0.98109 1.46373 1.11617 1.05251 1.72224 1.19814 0.89051 0.83960 0.78994 1.90723 1.16201 1.84492 1.49562 1.22997 0.94519 0.80083 1.05086 1.86628 1.39825 1.14022 1.83522 1.19602 0.85360 0.83779 0.73670 1.90920 1.13899 1.87614 1.45160 1.24344 1.00412 0.95145 1.14086 1.20956 1.02493 0.88877 0.98887 1.19746 0.89314 1.01629 0.94581 1.35496 1.20012 1.19974 1.28384 1.00998 0.72151 0.73294 0.72341 1.53077 1.21294 1.89049 1.28653 1.93652 1.48610 1.75290 1.76539 1.93630 1.80248 1.43763 1.76160 1.83800 0.98700 0.90662 1.58537 0.92317 0.95178 0.95170 0.77351 0.88010 0.88006 0.81580 0.81824 0.74481 0.75356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.43 13.29 55.43 0.74 -24.70 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.36 29.54 -169.99 -5.02 15.34 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.55 -14.33 9.28 -34.44 -0.32 -14.65 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.39 5.43 -5.20 -0.03 6.36 16 10 N -0.70 -13.95 5.55 -61.47 -0.34 -14.29 16 11 C 0.50 9.50 7.91 -10.99 -0.09 9.41 16 12 O -0.53 -12.46 16.50 -14.11 -0.23 -12.69 16 13 C 0.05 0.71 5.96 36.01 0.21 0.92 16 14 O -0.33 -4.82 9.61 -47.73 -0.46 -5.28 16 15 C 0.53 6.93 7.92 34.01 0.27 7.20 16 16 O -0.49 -6.86 16.64 -19.36 -0.32 -7.18 16 17 C -0.22 -2.30 6.45 -36.84 -0.24 -2.54 16 18 C -0.08 -0.63 10.01 -40.42 -0.40 -1.03 16 19 C -0.02 -0.10 9.77 -41.42 -0.40 -0.51 16 20 C -0.84 -6.51 6.35 29.19 0.19 -6.32 16 21 S 2.73 20.23 6.41 -107.50 -0.69 19.54 16 22 N -1.25 -4.15 9.52 60.35 0.57 -3.58 16 23 O -0.95 -10.32 17.83 -57.17 -1.02 -11.34 16 24 O -0.95 -9.48 17.74 -57.17 -1.01 -10.49 16 25 S 0.41 4.03 22.69 -107.50 -2.44 1.59 16 26 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.39 6.47 8.32 -40.82 -0.34 6.13 16 30 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.16 0.69 8.02 -52.48 -0.42 0.26 16 34 H 0.42 0.77 8.96 -34.47 -0.31 0.47 16 35 H 0.42 0.41 8.96 -34.48 -0.31 0.10 16 LS Contribution 351.96 15.07 5.30 5.30 Total: -1.00 -37.64 351.96 -8.86 -46.50 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -3.03 Total: 0.77 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -0.91 Total: 0.49 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.97 Total: -42.56 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -3.05 Total: -46.97 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 24.26 SS G_CDS: -3.13 Total: 21.13 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -37.64 -8.86 -46.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745252160.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.666 kcal (2) G-P(sol) polarization free energy of solvation -37.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds