Wall clock time and date at job start Wed Apr 1 2020 05:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99749 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46948 * 179.97438 * 9 7 2 11 11 C 1.34779 * 120.00165 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99926 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00033 * 179.97438 * 11 10 9 14 14 O 1.45206 * 109.47021 * 180.02562 * 13 11 10 15 15 C 1.34899 * 116.99849 * 180.02562 * 14 13 11 16 16 O 1.21629 * 120.00021 * 0.02562 * 15 14 13 17 17 C 1.46392 * 119.99962 * 180.02562 * 15 14 13 18 18 C 1.36748 * 125.46236 * 179.97438 * 17 15 14 19 19 C 1.37421 * 113.28599 * 180.02562 * 18 17 15 20 20 C 1.33852 * 115.10941 * 359.97438 * 19 18 17 21 21 S 1.76200 * 124.51771 * 180.02562 * 20 19 18 22 22 N 1.65604 * 107.21981 * 89.99655 * 21 20 19 23 23 O 1.42097 * 106.40438 * 203.54011 * 21 20 19 24 24 O 1.42104 * 106.40293 * 336.45941 * 21 20 19 25 25 S 1.70616 * 110.96665 * 359.72430 * 20 19 18 26 26 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47718 * 59.99471 * 9 7 2 28 28 H 1.09004 * 109.47331 * 299.99598 * 9 7 2 29 29 H 0.97004 * 120.00363 * 359.97438 * 10 9 7 30 30 H 1.09004 * 109.47103 * 60.00241 * 13 11 10 31 31 H 1.09000 * 109.47247 * 300.00119 * 13 11 10 32 32 H 1.07999 * 123.35891 * 359.97438 * 18 17 15 33 33 H 1.08003 * 122.44045 * 179.97438 * 19 18 17 34 34 H 0.96996 * 119.99898 * 149.99421 * 22 21 20 35 35 H 0.97000 * 120.00119 * 330.01088 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 1.7538 -4.8834 -0.0033 12 8 0.5613 -5.1050 -0.0035 13 6 2.7330 -6.0288 -0.0049 14 8 2.0070 -7.2863 -0.0059 15 6 2.7417 -8.4177 -0.0069 16 8 3.9564 -8.3540 -0.0064 17 6 2.0771 -9.7220 -0.0085 18 6 2.7094 -10.9346 -0.0101 19 6 1.8413 -11.9999 -0.0119 20 6 0.5429 -11.6746 -0.0113 21 16 -0.7785 -12.8402 -0.0127 22 7 -1.1459 -13.1666 1.5687 23 8 -1.9062 -12.1677 -0.5561 24 8 -0.2527 -14.0421 -0.5588 25 16 0.3379 -9.9808 -0.0007 26 1 -0.4849 0.8400 0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6240 -2.5575 0.8881 29 1 3.1567 -3.4355 -0.0029 30 1 3.3604 -5.9718 0.8847 31 1 3.3591 -5.9704 -0.8953 32 1 3.7838 -11.0441 -0.0107 33 1 2.1819 -13.0248 -0.0137 34 1 -2.0525 -13.4066 1.8164 35 1 -0.4545 -13.1177 2.2473 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745252160.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:00 Heat of formation + Delta-G solvation = -191.963381 kcal Electronic energy + Delta-G solvation = -24266.269557 eV Core-core repulsion = 20096.244402 eV Total energy + Delta-G solvation = -4170.025155 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.85546 -40.46338 -39.12770 -38.31110 -37.59620 -37.07580 -36.20851 -34.43582 -34.13597 -32.02590 -30.69993 -28.64973 -26.79691 -24.70281 -23.39288 -21.73623 -21.65491 -20.54501 -20.21248 -19.18441 -18.82673 -18.44399 -17.99360 -17.95936 -17.49085 -17.25502 -16.97846 -16.63778 -16.30948 -16.29628 -15.94506 -14.99875 -14.86579 -14.61726 -14.28334 -14.15169 -13.92997 -13.75883 -13.69503 -13.36924 -13.31262 -13.23613 -12.95049 -12.81588 -12.72790 -12.24124 -12.23171 -12.06633 -12.00254 -11.50841 -11.43881 -10.96715 -10.82737 -10.70570 -9.95436 -9.90877 -8.30380 -6.46923 -1.33793 -0.78169 0.05339 0.48420 0.71858 0.98857 1.44303 1.45767 1.50134 1.54843 1.57233 2.06494 2.30206 2.49250 2.52829 3.05033 3.40550 3.53828 3.66016 3.89015 3.98163 3.99786 4.13568 4.47984 4.64585 4.92117 5.01302 5.07913 5.20862 5.23120 5.39834 5.61013 5.81149 6.23420 6.31282 6.61775 6.74643 7.19000 7.33533 8.81626 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.025379 B = 0.001867 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.989007 B =14995.924590 C =15905.383033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.087 0.913 9 C 0.266 3.734 10 N -0.697 5.697 11 C 0.499 3.501 12 O -0.582 6.582 13 C 0.062 3.938 14 O -0.346 6.346 15 C 0.539 3.461 16 O -0.500 6.500 17 C -0.242 4.242 18 C -0.057 4.057 19 C -0.006 4.006 20 C -0.822 4.822 21 S 2.752 3.248 22 N -1.228 6.228 23 O -0.989 6.989 24 O -0.971 6.971 25 S 0.361 5.639 26 H 0.269 0.731 27 H -0.008 1.008 28 H -0.007 1.007 29 H 0.413 0.587 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.188 0.812 33 H 0.198 0.802 34 H 0.434 0.566 35 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.310 -28.800 4.441 29.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.594 4.594 8 H 0.105 0.895 9 C 0.144 3.856 10 N -0.349 5.349 11 C 0.284 3.716 12 O -0.463 6.463 13 C -0.015 4.015 14 O -0.261 6.261 15 C 0.383 3.617 16 O -0.390 6.390 17 C -0.363 4.363 18 C -0.092 4.092 19 C -0.042 4.042 20 C -1.024 5.024 21 S 2.834 3.166 22 N -0.909 5.909 23 O -0.978 6.978 24 O -0.961 6.961 25 S 0.636 5.364 26 H 0.078 0.922 27 H 0.010 0.990 28 H 0.011 0.989 29 H 0.250 0.750 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.205 0.795 33 H 0.215 0.785 34 H 0.267 0.733 35 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 3.971 -28.057 3.523 28.555 hybrid contribution 1.972 0.749 0.533 2.176 sum 5.943 -27.308 4.055 28.240 Atomic orbital electron populations 1.70129 1.08237 1.28626 1.49816 1.26058 0.95781 1.03895 0.93880 0.85151 0.78499 0.76982 0.78544 1.19708 1.21089 1.17858 1.21609 0.94449 0.90358 1.53027 0.89517 1.18634 0.88559 0.83753 0.94642 1.46029 1.11796 1.04639 1.72407 1.20641 0.89267 0.84715 0.76936 1.90702 1.18872 1.85273 1.51437 1.22879 0.92581 0.78134 1.07886 1.86620 1.40858 1.14680 1.83984 1.19827 0.85216 0.83763 0.72942 1.90904 1.14199 1.87730 1.46173 1.24282 1.00381 0.94812 1.16873 1.21315 1.03646 0.88004 0.96187 1.20144 0.88464 1.02888 0.92736 1.35511 1.20690 1.18454 1.27783 1.00132 0.71162 0.72424 0.72876 1.52683 1.22398 1.88416 1.27418 1.93609 1.50214 1.75919 1.78077 1.93609 1.80519 1.44530 1.77408 1.84031 0.99302 0.92733 1.60374 0.92213 0.98988 0.98861 0.75006 0.84970 0.85174 0.79491 0.78495 0.73254 0.73653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.03 13.29 21.45 0.28 -54.75 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.99 41.37 29.54 68.60 2.03 43.39 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 7 C -0.56 -29.26 9.28 25.60 0.24 -29.02 16 8 H 0.09 4.07 7.60 -2.91 -0.02 4.05 16 9 C 0.27 14.11 5.43 85.63 0.46 14.57 16 10 N -0.70 -27.76 5.55 -466.79 -2.59 -30.35 16 11 C 0.50 19.19 7.91 87.66 0.69 19.89 16 12 O -0.58 -28.48 16.50 15.76 0.26 -28.22 16 13 C 0.06 1.65 5.96 71.24 0.42 2.07 16 14 O -0.35 -10.11 9.61 -51.74 -0.50 -10.61 16 15 C 0.54 13.40 7.92 69.94 0.55 13.95 16 16 O -0.50 -13.08 16.64 19.41 0.32 -12.75 16 17 C -0.24 -4.84 6.45 24.04 0.16 -4.69 16 18 C -0.06 -0.76 10.01 21.73 0.22 -0.54 16 19 C -0.01 -0.06 9.77 21.08 0.21 0.14 16 20 C -0.82 -11.58 6.35 66.82 0.42 -11.16 16 21 S 2.75 37.62 6.41 -56.49 -0.36 37.26 16 22 N -1.23 -6.01 9.52 37.02 0.35 -5.65 16 23 O -0.99 -21.43 17.83 -128.00 -2.28 -23.71 16 24 O -0.97 -17.79 17.74 -128.00 -2.27 -20.06 16 25 S 0.36 7.13 22.69 -56.49 -1.28 5.85 16 26 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 27 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 28 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 29 H 0.41 13.02 8.32 -92.71 -0.77 12.25 16 30 H 0.13 2.77 8.14 -2.38 -0.02 2.75 16 31 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.20 0.81 8.02 -2.91 -0.02 0.79 16 34 H 0.43 0.87 8.96 -96.75 -0.87 0.00 16 35 H 0.43 -0.18 8.96 -96.74 -0.87 -1.04 16 Total: -1.00 -84.54 351.96 -3.50 -88.04 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -1.30 Total: 5.69 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 3.84 Total: 5.88 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -1.95 Total: -90.75 kcal Atomic # 8 Polarization: -90.89 SS G_CDS: -4.47 Total: -95.36 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: 44.75 SS G_CDS: -1.64 Total: 43.11 kcal Total: -84.54 -3.50 -88.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745252160.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.923 kcal (2) G-P(sol) polarization free energy of solvation -84.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds