Wall clock time and date at job start Wed Apr 1 2020 05:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34674 * 117.00604 * 2 1 4 4 O 1.21432 * 119.99839 * 359.97438 * 3 2 1 5 5 C 1.48058 * 120.00551 * 180.27012 * 3 2 1 6 6 N 1.32809 * 119.71421 * 353.84652 * 5 3 2 7 7 C 1.31575 * 121.61945 * 180.02562 * 6 5 3 8 8 Cl 1.73603 * 119.56235 * 179.97438 * 7 6 5 9 9 C 1.38799 * 120.87025 * 359.96645 * 7 6 5 10 10 C 1.38515 * 119.34887 * 0.03245 * 9 7 6 11 11 C 1.38665 * 118.50529 * 359.72116 * 10 9 7 12 12 S 1.76198 * 120.45510 * 180.28859 * 11 10 9 13 13 O 1.42099 * 106.40219 * 356.28982 * 12 11 10 14 14 O 1.42099 * 106.40254 * 129.20571 * 12 11 10 15 15 N 1.65602 * 107.21832 * 242.74710 * 12 11 10 16 16 C 1.46498 * 120.00202 * 63.37523 * 15 12 11 17 17 H 1.09002 * 109.46516 * 334.77995 * 16 15 12 18 18 C 1.53001 * 109.46991 * 94.77716 * 16 15 12 19 19 C 1.50693 * 109.47069 * 214.78130 * 16 15 12 20 20 H 1.07997 * 120.00261 * 359.97438 * 19 16 15 21 21 C 1.37879 * 119.99878 * 179.97438 * 19 16 15 22 22 N 1.31515 * 119.99897 * 359.97438 * 21 19 16 23 23 Si 1.86797 * 119.99947 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.47312 * 90.00066 * 23 21 19 25 25 H 1.48505 * 109.47215 * 209.99836 * 23 21 19 26 26 H 1.48501 * 109.47476 * 330.00241 * 23 21 19 27 27 H 1.08996 * 109.46683 * 60.00167 * 1 2 3 28 28 H 1.08994 * 109.47553 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47319 * 300.00706 * 1 2 3 30 30 H 1.08007 * 120.32398 * 180.02562 * 9 7 6 31 31 H 1.07997 * 120.74652 * 180.02562 * 10 9 7 32 32 H 0.96999 * 119.99821 * 243.37440 * 15 12 11 33 33 H 1.09003 * 109.46674 * 180.02562 * 18 16 15 34 34 H 1.09003 * 109.47181 * 300.00031 * 18 16 15 35 35 H 1.08994 * 109.46964 * 60.00791 * 18 16 15 36 36 H 0.97004 * 119.99598 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.1999 0.0000 4 8 1.4022 2.2184 -0.0005 5 6 3.5421 1.2774 -0.0060 6 7 4.2600 0.1663 0.1122 7 6 5.5755 0.1917 0.1119 8 17 6.4609 -1.2931 0.2705 9 6 6.2646 1.3900 -0.0137 10 6 5.5536 2.5721 -0.1394 11 6 4.1682 2.5141 -0.1411 12 16 3.2129 3.9855 -0.3057 13 8 4.1378 5.0640 -0.3282 14 8 2.2773 3.7421 -1.3472 15 7 2.3304 4.1551 1.0854 16 6 3.0131 4.3511 2.3666 17 1 4.0162 3.9278 2.3122 18 6 3.1069 5.8476 2.6710 19 6 2.2365 3.6637 3.4599 20 1 1.3252 3.1343 3.2240 21 6 2.6892 3.7107 4.7614 22 7 3.7992 4.3550 5.0485 23 14 1.7261 2.8593 6.1166 24 1 2.2064 1.4617 6.2623 25 1 1.9238 3.5865 7.3963 26 1 0.2824 2.8528 5.7689 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 7.3446 1.4006 -0.0132 31 1 6.0668 3.5172 -0.2389 32 1 1.3615 4.1248 1.0517 33 1 3.6152 5.9933 3.6241 34 1 3.6687 6.3447 1.8802 35 1 2.1039 6.2707 2.7254 36 1 4.1179 4.3878 5.9642 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751058112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:10 Heat of formation + Delta-G solvation = -105.392980 kcal Electronic energy + Delta-G solvation = -27548.550909 eV Core-core repulsion = 23380.236022 eV Total energy + Delta-G solvation = -4168.314887 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.05333 -39.77099 -37.06530 -36.94349 -36.28228 -35.34197 -35.30438 -33.17141 -32.19098 -31.83119 -28.24725 -27.96911 -25.24505 -25.19633 -24.24369 -21.70398 -20.90456 -19.20194 -18.64576 -17.93510 -17.36511 -16.96749 -16.73202 -16.47080 -15.97787 -15.83995 -15.21810 -14.79171 -14.59311 -14.12034 -13.69031 -13.64647 -13.30891 -13.21562 -12.62745 -12.17016 -12.13086 -12.06507 -11.73378 -11.69314 -11.57735 -11.51994 -11.31401 -11.15761 -11.00797 -10.79475 -10.63273 -10.57546 -10.44865 -10.27273 -10.10718 -10.01054 -9.55599 -9.20729 -8.62916 -8.27027 -6.16983 -4.24647 -0.10555 0.58494 0.94262 1.38418 2.21076 2.40862 3.21290 3.23992 3.28674 3.31191 3.63778 3.86876 4.13702 4.31579 4.36453 4.50033 4.62710 4.93971 5.14840 5.15570 5.23989 5.27876 5.28590 5.52133 5.58262 5.89750 6.20448 6.35997 6.82340 6.99797 7.03615 7.08039 7.54932 7.57484 7.69945 7.95037 8.02148 8.30256 8.79868 9.41976 10.88629 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.008783 B = 0.005357 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3187.143325 B = 5225.168440 C = 5636.284302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.329 6.329 3 C 0.513 3.487 4 O -0.454 6.454 5 C 0.221 3.779 6 N -0.443 5.443 7 C 0.211 3.789 8 Cl -0.013 7.013 9 C -0.145 4.145 10 C 0.029 3.971 11 C -0.668 4.668 12 S 2.701 3.299 13 O -0.963 6.963 14 O -0.957 6.957 15 N -1.078 6.078 16 C 0.272 3.728 17 H 0.034 0.966 18 C -0.157 4.157 19 C -0.523 4.523 20 H 0.064 0.936 21 C 0.065 3.935 22 N -0.887 5.887 23 Si 0.897 3.103 24 H -0.281 1.281 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.164 0.836 31 H 0.177 0.823 32 H 0.418 0.582 33 H 0.091 0.909 34 H 0.026 0.974 35 H 0.034 0.966 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.788 -8.110 -9.950 13.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.244 6.244 3 C 0.353 3.647 4 O -0.338 6.338 5 C 0.081 3.919 6 N -0.157 5.157 7 C 0.045 3.955 8 Cl 0.015 6.985 9 C -0.166 4.166 10 C 0.003 3.997 11 C -0.750 4.750 12 S 2.782 3.218 13 O -0.953 6.953 14 O -0.947 6.947 15 N -0.843 5.843 16 C 0.168 3.832 17 H 0.052 0.948 18 C -0.216 4.216 19 C -0.563 4.563 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.525 5.525 23 Si 0.724 3.276 24 H -0.207 1.207 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.087 0.913 28 H 0.122 0.878 29 H 0.090 0.910 30 H 0.181 0.819 31 H 0.194 0.806 32 H 0.255 0.745 33 H 0.110 0.890 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.520 -8.203 -10.399 13.483 hybrid contribution -0.161 -0.722 1.290 1.488 sum 2.358 -8.926 -9.109 12.969 Atomic orbital electron populations 1.23439 0.75305 1.03986 1.03386 1.86602 1.23809 1.30555 1.83405 1.20478 0.87114 0.82762 0.74326 1.90877 1.65186 1.34990 1.42744 1.19324 0.90834 0.87465 0.94271 1.66981 1.06636 1.30679 1.11450 1.21894 0.89453 0.88634 0.95486 1.98432 1.71625 1.33108 1.95302 1.22235 1.02711 0.90960 1.00740 1.21508 0.91046 0.99953 0.87190 1.32657 1.09024 1.20843 1.12469 1.02009 0.73103 0.72962 0.73756 1.93569 1.65586 1.49162 1.86985 1.93563 1.60282 1.85370 1.55447 1.55483 1.18601 1.87309 1.22893 1.18531 0.91940 0.93767 0.78980 0.94840 1.22223 0.99987 0.97004 1.02431 1.21288 1.09818 1.33467 0.91714 0.91789 1.24911 0.95108 0.95218 0.98568 1.69874 1.21204 1.41496 1.19884 0.86520 0.80405 0.79465 0.81199 1.20660 1.20999 1.19750 0.91267 0.87816 0.91001 0.81883 0.80616 0.74549 0.89043 0.95519 0.94726 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.45 16 2 O -0.33 -5.22 10.39 -40.42 -0.42 -5.64 16 3 C 0.51 9.30 7.78 34.76 0.27 9.57 16 4 O -0.45 -8.65 9.60 -27.41 -0.26 -8.92 16 5 C 0.22 3.96 6.74 -83.03 -0.56 3.40 16 6 N -0.44 -7.45 10.10 -6.95 -0.07 -7.52 16 7 C 0.21 2.99 7.27 -17.45 -0.13 2.87 16 8 Cl -0.01 -0.16 29.11 -51.86 -1.51 -1.67 16 9 C -0.15 -1.77 9.88 -39.27 -0.39 -2.16 16 10 C 0.03 0.41 9.66 -39.32 -0.38 0.03 16 11 C -0.67 -11.64 5.67 -39.04 -0.22 -11.87 16 12 S 2.70 52.20 4.82 -107.50 -0.52 51.68 16 13 O -0.96 -19.57 16.33 -57.17 -0.93 -20.50 16 14 O -0.96 -19.57 15.28 -67.22 -1.03 -20.60 16 15 N -1.08 -22.51 4.18 -5.88 -0.02 -22.53 16 16 C 0.27 6.49 2.77 -69.09 -0.19 6.30 16 17 H 0.03 0.84 7.76 -51.93 -0.40 0.43 16 18 C -0.16 -3.71 9.29 37.16 0.35 -3.37 16 19 C -0.52 -13.50 8.76 -34.44 -0.30 -13.81 16 20 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 21 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 22 N -0.89 -23.88 11.32 55.43 0.63 -23.25 16 23 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 31 H 0.18 2.08 7.44 -52.49 -0.39 1.69 16 32 H 0.42 8.38 7.62 -34.47 -0.26 8.12 16 33 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 34 H 0.03 0.59 7.62 -51.93 -0.40 0.19 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 338.94 15.07 5.11 5.11 Total: -1.00 -31.54 338.94 -8.06 -39.60 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -3.43 Total: 4.76 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -0.58 Total: -5.98 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.53 Total: -53.30 kcal Atomic # 8 Polarization: -53.01 SS G_CDS: -2.64 Total: -55.66 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 52.20 SS G_CDS: -0.52 Total: 51.68 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.51 Total: -1.67 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.54 -8.06 -39.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751058112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.796 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds