Wall clock time and date at job start Wed Apr 1 2020 05:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34674 * 117.00604 * 2 1 4 4 O 1.21432 * 119.99839 * 359.97438 * 3 2 1 5 5 C 1.48058 * 120.00551 * 180.27012 * 3 2 1 6 6 N 1.32809 * 119.71421 * 353.84652 * 5 3 2 7 7 C 1.31575 * 121.61945 * 180.02562 * 6 5 3 8 8 Cl 1.73603 * 119.56235 * 179.97438 * 7 6 5 9 9 C 1.38799 * 120.87025 * 359.96645 * 7 6 5 10 10 C 1.38515 * 119.34887 * 0.03245 * 9 7 6 11 11 C 1.38665 * 118.50529 * 359.72116 * 10 9 7 12 12 S 1.76198 * 120.45510 * 180.28859 * 11 10 9 13 13 O 1.42099 * 106.40219 * 356.28982 * 12 11 10 14 14 O 1.42099 * 106.40254 * 129.20571 * 12 11 10 15 15 N 1.65602 * 107.21832 * 242.74710 * 12 11 10 16 16 C 1.46498 * 120.00202 * 63.37523 * 15 12 11 17 17 H 1.09002 * 109.46516 * 334.77995 * 16 15 12 18 18 C 1.53001 * 109.46991 * 94.77716 * 16 15 12 19 19 C 1.50693 * 109.47069 * 214.78130 * 16 15 12 20 20 H 1.07997 * 120.00261 * 359.97438 * 19 16 15 21 21 C 1.37879 * 119.99878 * 179.97438 * 19 16 15 22 22 N 1.31515 * 119.99897 * 359.97438 * 21 19 16 23 23 Si 1.86797 * 119.99947 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.47312 * 90.00066 * 23 21 19 25 25 H 1.48505 * 109.47215 * 209.99836 * 23 21 19 26 26 H 1.48501 * 109.47476 * 330.00241 * 23 21 19 27 27 H 1.08996 * 109.46683 * 60.00167 * 1 2 3 28 28 H 1.08994 * 109.47553 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47319 * 300.00706 * 1 2 3 30 30 H 1.08007 * 120.32398 * 180.02562 * 9 7 6 31 31 H 1.07997 * 120.74652 * 180.02562 * 10 9 7 32 32 H 0.96999 * 119.99821 * 243.37440 * 15 12 11 33 33 H 1.09003 * 109.46674 * 180.02562 * 18 16 15 34 34 H 1.09003 * 109.47181 * 300.00031 * 18 16 15 35 35 H 1.08994 * 109.46964 * 60.00791 * 18 16 15 36 36 H 0.97004 * 119.99598 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.1999 0.0000 4 8 1.4022 2.2184 -0.0005 5 6 3.5421 1.2774 -0.0060 6 7 4.2600 0.1663 0.1122 7 6 5.5755 0.1917 0.1119 8 17 6.4609 -1.2931 0.2705 9 6 6.2646 1.3900 -0.0137 10 6 5.5536 2.5721 -0.1394 11 6 4.1682 2.5141 -0.1411 12 16 3.2129 3.9855 -0.3057 13 8 4.1378 5.0640 -0.3282 14 8 2.2773 3.7421 -1.3472 15 7 2.3304 4.1551 1.0854 16 6 3.0131 4.3511 2.3666 17 1 4.0162 3.9278 2.3122 18 6 3.1069 5.8476 2.6710 19 6 2.2365 3.6637 3.4599 20 1 1.3252 3.1343 3.2240 21 6 2.6892 3.7107 4.7614 22 7 3.7992 4.3550 5.0485 23 14 1.7261 2.8593 6.1166 24 1 2.2064 1.4617 6.2623 25 1 1.9238 3.5865 7.3963 26 1 0.2824 2.8528 5.7689 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 7.3446 1.4006 -0.0132 31 1 6.0668 3.5172 -0.2389 32 1 1.3615 4.1248 1.0517 33 1 3.6152 5.9933 3.6241 34 1 3.6687 6.3447 1.8802 35 1 2.1039 6.2707 2.7254 36 1 4.1179 4.3878 5.9642 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751058112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:09 Heat of formation + Delta-G solvation = -127.519893 kcal Electronic energy + Delta-G solvation = -27549.510404 eV Core-core repulsion = 23380.236022 eV Total energy + Delta-G solvation = -4169.274382 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.28324 -40.98058 -38.44894 -38.04103 -37.72016 -37.08698 -36.89074 -34.33349 -34.09597 -33.02194 -30.07689 -29.01375 -27.22923 -26.35337 -25.42867 -23.05602 -22.65070 -20.66696 -19.90219 -19.37765 -18.88058 -18.38209 -18.03637 -17.79414 -17.56630 -17.02815 -16.93671 -16.27626 -15.93248 -15.35916 -15.24455 -14.74553 -14.57576 -14.55621 -14.34919 -13.95601 -13.51563 -13.29644 -13.18653 -13.09492 -13.05544 -12.94752 -12.84396 -12.72337 -12.55110 -12.38461 -12.23720 -12.08532 -11.99271 -11.84114 -11.59181 -11.22454 -11.10265 -10.67988 -10.58409 -10.04401 -8.15383 -6.28519 -1.33268 -0.60085 -0.50749 0.31411 0.97000 1.23628 1.40615 1.43229 1.51833 1.96562 2.13683 2.42932 2.65569 2.74327 3.10794 3.14156 3.41813 3.46824 3.85632 3.91459 4.18365 4.27342 4.34464 4.39037 4.51529 4.68269 4.85516 4.94885 5.00577 5.12357 5.19010 5.59412 5.76126 5.82077 6.04165 6.11958 6.29912 6.52440 6.82879 7.40714 8.89662 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.008783 B = 0.005357 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3187.143325 B = 5225.168440 C = 5636.284302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.334 6.334 3 C 0.505 3.495 4 O -0.474 6.474 5 C 0.199 3.801 6 N -0.459 5.459 7 C 0.200 3.800 8 Cl 0.011 6.989 9 C -0.123 4.123 10 C 0.024 3.976 11 C -0.685 4.685 12 S 2.717 3.283 13 O -0.977 6.977 14 O -0.971 6.971 15 N -1.082 6.082 16 C 0.277 3.723 17 H 0.022 0.978 18 C -0.150 4.150 19 C -0.536 4.536 20 H 0.060 0.940 21 C 0.023 3.977 22 N -0.909 5.909 23 Si 0.952 3.048 24 H -0.279 1.279 25 H -0.281 1.281 26 H -0.269 1.269 27 H 0.073 0.927 28 H 0.141 0.859 29 H 0.066 0.934 30 H 0.212 0.788 31 H 0.199 0.801 32 H 0.419 0.581 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.036 0.964 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.762 -9.392 -9.959 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.249 6.249 3 C 0.346 3.654 4 O -0.361 6.361 5 C 0.059 3.941 6 N -0.174 5.174 7 C 0.034 3.966 8 Cl 0.040 6.960 9 C -0.143 4.143 10 C -0.002 4.002 11 C -0.771 4.771 12 S 2.801 3.199 13 O -0.967 6.967 14 O -0.962 6.962 15 N -0.845 5.845 16 C 0.172 3.828 17 H 0.040 0.960 18 C -0.210 4.210 19 C -0.575 4.575 20 H 0.078 0.922 21 C -0.178 4.178 22 N -0.548 5.548 23 Si 0.777 3.223 24 H -0.205 1.205 25 H -0.206 1.206 26 H -0.194 1.194 27 H 0.092 0.908 28 H 0.159 0.841 29 H 0.085 0.915 30 H 0.229 0.771 31 H 0.216 0.784 32 H 0.256 0.744 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.466 -9.473 -10.418 14.501 hybrid contribution -0.382 -0.458 1.237 1.373 sum 3.084 -9.931 -9.181 13.872 Atomic orbital electron populations 1.23802 0.73256 1.06454 1.03397 1.86595 1.25884 1.29579 1.82843 1.20764 0.87606 0.83103 0.73955 1.90841 1.65659 1.35582 1.43985 1.19365 0.90987 0.88015 0.95694 1.66975 1.08018 1.30350 1.12035 1.22374 0.89030 0.90382 0.94809 1.98442 1.70668 1.31799 1.95058 1.22743 1.04830 0.89215 0.97534 1.21942 0.89897 1.01873 0.86490 1.32325 1.10412 1.19508 1.14855 1.01242 0.72703 0.73039 0.72884 1.93542 1.65631 1.50558 1.87013 1.93539 1.61149 1.85824 1.55671 1.55359 1.18797 1.88019 1.22344 1.18284 0.91359 0.93378 0.79783 0.96027 1.22126 0.99969 0.97243 1.01676 1.21527 1.09864 1.33553 0.92568 0.92193 1.25575 0.95934 0.95829 1.00434 1.69970 1.22196 1.42306 1.20317 0.85655 0.79343 0.78428 0.78833 1.20522 1.20596 1.19360 0.90792 0.84130 0.91501 0.77112 0.78394 0.74427 0.90881 0.94708 0.94484 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 10.56 113.37 1.20 1.73 16 2 O -0.33 -10.58 10.39 -55.83 -0.58 -11.16 16 3 C 0.50 18.50 7.78 70.43 0.55 19.05 16 4 O -0.47 -18.48 9.60 27.90 0.27 -18.22 16 5 C 0.20 7.12 6.74 41.85 0.28 7.40 16 6 N -0.46 -15.00 10.10 -175.89 -1.78 -16.77 16 7 C 0.20 5.22 7.27 84.87 0.62 5.84 16 8 Cl 0.01 0.24 29.11 -2.72 -0.08 0.16 16 9 C -0.12 -2.62 9.88 22.47 0.22 -2.40 16 10 C 0.02 0.63 9.66 22.44 0.22 0.85 16 11 C -0.68 -23.60 5.67 22.62 0.13 -23.47 16 12 S 2.72 105.60 4.82 -56.49 -0.27 105.33 16 13 O -0.98 -39.47 16.33 -128.00 -2.09 -41.57 16 14 O -0.97 -40.29 15.28 -118.40 -1.81 -42.10 16 15 N -1.08 -45.84 4.18 -172.53 -0.72 -46.56 16 16 C 0.28 13.36 2.77 44.24 0.12 13.48 16 17 H 0.02 1.10 7.76 -2.39 -0.02 1.08 16 18 C -0.15 -7.18 9.29 71.98 0.67 -6.51 16 19 C -0.54 -27.80 8.76 25.60 0.22 -27.57 16 20 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 21 C 0.02 1.20 5.30 84.66 0.45 1.65 16 22 N -0.91 -48.97 11.32 21.45 0.24 -48.73 16 23 Si 0.95 41.70 29.54 68.60 2.03 43.73 16 24 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 25 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 27 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.21 2.35 8.06 -2.91 -0.02 2.33 16 31 H 0.20 4.23 7.44 -2.91 -0.02 4.21 16 32 H 0.42 17.24 7.62 -96.75 -0.74 16.50 16 33 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 34 H 0.03 1.55 7.62 -2.39 -0.02 1.53 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 Total: -1.00 -67.55 338.94 0.30 -67.25 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.42 Total: 18.60 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 4.68 Total: -9.96 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -2.26 Total: -112.06 kcal Atomic # 8 Polarization: -108.83 SS G_CDS: -4.21 Total: -113.04 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: 105.60 SS G_CDS: -0.27 Total: 105.33 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -0.08 Total: 0.16 kcal Total: -67.55 0.30 -67.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751058112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.274 kcal (2) G-P(sol) polarization free energy of solvation -67.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds