Wall clock time and date at job start Wed Apr 1 2020 04:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47292 * 2 1 4 4 C 1.52993 * 109.47233 * 120.00277 * 2 1 3 5 5 N 1.46898 * 109.47779 * 177.66734 * 4 2 1 6 6 C 1.46890 * 111.00501 * 156.65450 * 5 4 2 7 7 C 1.50699 * 109.47749 * 288.13905 * 6 5 4 8 8 H 1.08007 * 119.99535 * 4.89682 * 7 6 5 9 9 C 1.37870 * 120.00573 * 184.89207 * 7 6 5 10 10 N 1.31518 * 119.99770 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00255 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47289 * 90.00223 * 11 9 7 13 13 H 1.48500 * 109.47288 * 210.00254 * 11 9 7 14 14 H 1.48502 * 109.47318 * 330.00129 * 11 9 7 15 15 C 1.46901 * 111.00066 * 280.62094 * 5 4 2 16 16 C 1.50699 * 109.47768 * 77.52789 * 15 5 4 17 17 C 1.38600 * 120.71693 * 69.15420 * 16 15 5 18 18 N 1.32276 * 119.19492 * 180.02562 * 17 16 15 19 19 C 1.32501 * 120.73828 * 0.02562 * 18 17 16 20 20 N 1.38407 * 119.21458 * 179.97438 * 19 18 17 21 21 C 1.46954 * 110.99703 * 179.97438 * 20 19 18 22 22 C 1.53059 * 109.37846 * 176.82308 * 21 20 19 23 23 N 1.46957 * 109.36725 * 58.39108 * 22 21 20 24 24 C 1.46898 * 111.00185 * 176.80784 * 23 22 21 25 25 C 1.46952 * 110.87896 * 300.68080 * 23 22 21 26 26 C 1.46965 * 111.01803 * 56.18693 * 20 19 18 27 27 N 1.32482 * 121.56587 * 0.27277 * 19 18 17 28 28 C 1.32281 * 120.74318 * 359.44591 * 27 19 18 29 29 H 1.08997 * 109.46716 * 300.00255 * 1 2 3 30 30 H 1.09003 * 109.46850 * 59.99526 * 1 2 3 31 31 H 1.08998 * 109.46978 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46978 * 239.99858 * 2 1 3 33 33 H 1.08997 * 109.47229 * 64.90540 * 3 2 1 34 34 H 1.08994 * 109.46825 * 184.90672 * 3 2 1 35 35 H 1.08996 * 109.46974 * 304.90300 * 3 2 1 36 36 H 1.09010 * 109.47128 * 57.66610 * 4 2 1 37 37 H 1.09000 * 109.47402 * 297.66727 * 4 2 1 38 38 H 1.09002 * 109.47006 * 48.14525 * 6 5 4 39 39 H 1.09001 * 109.47154 * 168.13865 * 6 5 4 40 40 H 0.97006 * 119.99969 * 180.02562 * 10 9 7 41 41 H 1.09010 * 109.46448 * 317.52422 * 15 5 4 42 42 H 1.09000 * 109.46850 * 197.53559 * 15 5 4 43 43 H 1.07998 * 120.40266 * 0.04628 * 17 16 15 44 44 H 1.09001 * 109.49169 * 56.84733 * 21 20 19 45 45 H 1.08996 * 109.49185 * 296.79349 * 21 20 19 46 46 H 1.08997 * 109.48724 * 178.35759 * 22 21 20 47 47 H 1.09000 * 109.49216 * 298.39983 * 22 21 20 48 48 H 1.08998 * 109.46903 * 59.99997 * 24 23 22 49 49 H 1.08996 * 109.46919 * 179.97438 * 24 23 22 50 50 H 1.09003 * 109.47220 * 300.00093 * 24 23 22 51 51 H 1.09001 * 109.49036 * 179.28441 * 25 23 22 52 52 H 1.09003 * 109.48790 * 299.35133 * 25 23 22 53 53 H 1.08998 * 109.46748 * 63.20063 * 26 20 19 54 54 H 1.08995 * 109.50639 * 303.15549 * 26 20 19 55 55 H 1.07998 * 120.40512 * 180.29963 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5079 -0.7703 1.2214 6 6 4.0551 -0.9288 2.5753 7 6 3.8796 0.3568 3.3418 8 1 3.3388 1.1801 2.8988 9 6 4.4092 0.4821 4.6086 10 7 5.0681 -0.5203 5.1479 11 14 4.1910 2.0753 5.5589 12 1 2.9409 2.0081 6.3576 13 1 5.3489 2.2724 6.4675 14 1 4.1097 3.2123 4.6071 15 6 3.9822 -1.8400 0.3332 16 6 3.8637 -1.3920 -1.1007 17 6 4.6816 -0.3904 -1.5995 18 7 4.5515 -0.0203 -2.8627 19 6 3.6520 -0.5952 -3.6476 20 7 3.5424 -0.1830 -4.9643 21 6 2.4948 -0.9371 -5.6667 22 6 2.3509 -0.3990 -7.0924 23 7 3.6388 -0.5174 -7.7903 24 6 3.5223 -0.0805 -9.1879 25 6 4.6863 0.2370 -7.0881 26 6 4.8301 -0.3015 -5.6627 27 7 2.8511 -1.5511 -3.2004 28 6 2.9333 -1.9716 -1.9489 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.7503 1.9303 0.9306 34 1 3.1265 1.4437 -0.0879 35 1 1.6068 1.9810 -0.8428 36 1 1.6429 -1.7362 1.2703 37 1 1.7113 -0.1839 2.1387 38 1 3.5277 -1.7328 3.0886 39 1 5.1157 -1.1723 2.5124 40 1 5.4404 -0.4324 6.0394 41 1 3.3773 -2.7339 0.4859 42 1 5.0248 -2.0641 0.5590 43 1 5.4166 0.0819 -0.9645 44 1 1.5484 -0.8236 -5.1380 45 1 2.7675 -1.9918 -5.7020 46 1 1.5947 -0.9762 -7.6243 47 1 2.0509 0.6483 -7.0573 48 1 3.2033 0.9614 -9.2175 49 1 4.4895 -0.1780 -9.6808 50 1 2.7878 -0.7001 -9.7023 51 1 5.6327 0.1235 -7.6168 52 1 4.4132 1.2917 -7.0529 53 1 5.1292 -1.3491 -5.6978 54 1 5.5869 0.2751 -5.1310 55 1 2.2809 -2.7546 -1.5915 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768153905.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:43 Heat of formation + Delta-G solvation = 61.424313 kcal Electronic energy + Delta-G solvation = -31953.399040 eV Core-core repulsion = 28025.341664 eV Total energy + Delta-G solvation = -3928.057376 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.39322 -40.28440 -38.99475 -36.62909 -35.63413 -34.74071 -34.57379 -32.76633 -32.03379 -29.76907 -28.75850 -27.95521 -27.26007 -26.08865 -25.69371 -24.68260 -24.20040 -23.20784 -22.13236 -20.99740 -20.81973 -18.96842 -18.64651 -18.44513 -16.98849 -16.65679 -16.38026 -16.28072 -16.08396 -16.03546 -15.74121 -15.63098 -15.42656 -15.20558 -14.89554 -14.63861 -14.57473 -14.37021 -14.22103 -13.84052 -13.53445 -13.30873 -13.18131 -13.07752 -12.91252 -12.79611 -12.72992 -12.64513 -12.46625 -12.37290 -12.17368 -12.09954 -11.99286 -11.98091 -11.81945 -11.70094 -11.44326 -11.39656 -11.27080 -10.75006 -10.56692 -10.08737 -9.39529 -9.25647 -8.95860 -8.15858 -6.23210 -0.02268 0.16235 1.41077 1.42470 1.53148 2.12188 2.41945 2.72630 2.92716 3.15010 3.17301 3.36704 3.65867 3.76482 3.86767 3.89871 3.96602 4.00151 4.06505 4.12581 4.17930 4.18884 4.33342 4.39076 4.52345 4.59324 4.62651 4.64857 4.67437 4.71170 4.78815 4.80829 4.83273 4.86098 4.89226 4.95109 4.96571 5.02553 5.04994 5.05720 5.11836 5.22810 5.26115 5.29880 5.34381 5.51806 5.56012 5.57714 5.71601 5.74778 5.99549 6.02615 6.12123 6.22022 6.42489 6.67539 6.92606 7.15634 7.45362 8.94149 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.002379 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.163252 B =11766.814634 C =12047.861177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 C -0.121 4.121 4 C 0.072 3.928 5 N -0.531 5.531 6 C 0.211 3.789 7 C -0.510 4.510 8 H 0.059 0.941 9 C 0.004 3.996 10 N -0.932 5.932 11 Si 0.957 3.043 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.269 1.269 15 C 0.104 3.896 16 C -0.187 4.187 17 C 0.188 3.812 18 N -0.544 5.544 19 C 0.472 3.528 20 N -0.470 5.470 21 C 0.079 3.921 22 C 0.059 3.941 23 N -0.558 5.558 24 C 0.026 3.974 25 C 0.062 3.938 26 C 0.073 3.927 27 N -0.554 5.554 28 C 0.178 3.822 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.039 0.961 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.032 0.968 37 H 0.054 0.946 38 H -0.035 1.035 39 H 0.012 0.988 40 H 0.262 0.738 41 H 0.054 0.946 42 H 0.078 0.922 43 H 0.167 0.833 44 H 0.086 0.914 45 H 0.052 0.948 46 H 0.104 0.896 47 H 0.040 0.960 48 H 0.028 0.972 49 H 0.078 0.922 50 H 0.079 0.921 51 H 0.104 0.896 52 H 0.042 0.958 53 H 0.043 0.957 54 H 0.091 0.909 55 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.420 -2.208 -25.740 26.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 C -0.179 4.179 4 C -0.056 4.056 5 N -0.255 5.255 6 C 0.085 3.915 7 C -0.548 4.548 8 H 0.077 0.923 9 C -0.194 4.194 10 N -0.573 5.573 11 Si 0.783 3.217 12 H -0.201 1.201 13 H -0.210 1.210 14 H -0.194 1.194 15 C -0.025 4.025 16 C -0.193 4.193 17 C 0.021 3.979 18 N -0.262 5.262 19 C 0.115 3.885 20 N -0.191 5.191 21 C -0.049 4.049 22 C -0.069 4.069 23 N -0.283 5.283 24 C -0.121 4.121 25 C -0.066 4.066 26 C -0.053 4.053 27 N -0.273 5.273 28 C 0.011 3.989 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.073 0.927 38 H -0.017 1.017 39 H 0.030 0.970 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.184 0.816 44 H 0.104 0.896 45 H 0.070 0.930 46 H 0.122 0.878 47 H 0.058 0.942 48 H 0.047 0.953 49 H 0.097 0.903 50 H 0.098 0.902 51 H 0.122 0.878 52 H 0.061 0.939 53 H 0.062 0.938 54 H 0.109 0.891 55 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -5.222 -1.475 -26.810 27.353 hybrid contribution -0.078 -0.051 2.499 2.500 sum -5.299 -1.525 -24.311 24.928 Atomic orbital electron populations 1.21761 0.94327 1.02053 1.01588 1.21284 0.95623 0.96263 0.97727 1.21512 1.00751 0.95943 0.99654 1.22092 0.87347 0.98121 0.98017 1.61929 1.08406 1.44387 1.10774 1.19394 0.93532 0.94683 0.83907 1.21419 1.33732 1.00185 0.99472 0.92276 1.25757 0.95204 0.99660 0.98747 1.70061 1.37835 1.32948 1.16496 0.85557 0.77591 0.80094 0.78430 1.20146 1.20979 1.19354 1.20861 1.01289 0.92521 0.87865 1.21344 0.99338 1.00661 0.97986 1.22962 0.95092 0.90440 0.89365 1.68025 1.23114 1.28901 1.06170 1.21178 0.87981 0.86796 0.92511 1.58698 1.09676 1.52670 0.98016 1.22064 0.93978 0.95640 0.93177 1.22247 0.91874 1.00176 0.92595 1.62216 1.06234 1.56249 1.03580 1.22395 1.03450 0.98756 0.87527 1.22182 0.96776 0.95605 0.92020 1.22240 0.88177 1.00614 0.94279 1.68365 1.27884 1.13851 1.17242 1.23194 0.92948 0.95617 0.87151 0.93048 0.92399 0.91861 0.91122 0.94225 0.93630 0.94007 0.94975 0.92741 1.01730 0.96996 0.92900 0.92799 0.90365 0.81562 0.89584 0.92977 0.87832 0.94213 0.95313 0.90326 0.90247 0.87806 0.93929 0.93826 0.89111 0.79692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.19 71.98 0.66 -2.93 16 2 C -0.09 -2.76 2.68 -10.79 -0.03 -2.79 16 3 C -0.12 -4.11 8.99 71.98 0.65 -3.46 16 4 C 0.07 2.59 4.24 86.30 0.37 2.96 16 5 N -0.53 -20.72 3.77 -905.38 -3.41 -24.13 16 6 C 0.21 10.45 4.71 85.56 0.40 10.85 16 7 C -0.51 -27.72 8.39 25.60 0.21 -27.51 16 8 H 0.06 3.21 7.59 -2.91 -0.02 3.19 16 9 C 0.00 0.23 5.46 84.65 0.46 0.69 16 10 N -0.93 -54.69 13.29 21.45 0.28 -54.40 16 11 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 15 C 0.10 3.27 5.24 85.56 0.45 3.72 16 16 C -0.19 -5.29 3.66 -19.69 -0.07 -5.36 16 17 C 0.19 5.69 10.75 84.71 0.91 6.60 16 18 N -0.54 -16.68 9.72 -197.99 -1.92 -18.60 16 19 C 0.47 13.45 7.17 261.49 1.88 15.32 16 20 N -0.47 -11.57 4.77 -708.30 -3.38 -14.95 16 21 C 0.08 1.62 4.77 86.31 0.41 2.03 16 22 C 0.06 0.94 5.62 86.31 0.49 1.42 16 23 N -0.56 -8.63 4.97 -921.93 -4.58 -13.21 16 24 C 0.03 0.28 9.60 127.69 1.23 1.50 16 25 C 0.06 1.00 5.62 86.31 0.49 1.49 16 26 C 0.07 1.54 5.46 86.31 0.47 2.01 16 27 N -0.55 -14.96 8.69 -197.99 -1.72 -16.69 16 28 C 0.18 4.51 8.71 84.71 0.74 5.24 16 29 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 2.11 3.62 -2.38 -0.01 2.10 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.04 1.71 7.55 -2.39 -0.02 1.69 16 35 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.03 1.06 7.63 -2.38 -0.02 1.05 16 37 H 0.05 2.26 6.95 -2.39 -0.02 2.24 16 38 H -0.03 -1.88 8.05 -2.39 -0.02 -1.89 16 39 H 0.01 0.64 7.67 -2.39 -0.02 0.62 16 40 H 0.26 14.60 8.31 -92.70 -0.77 13.82 16 41 H 0.05 1.53 7.48 -2.38 -0.02 1.52 16 42 H 0.08 2.53 7.61 -2.39 -0.02 2.51 16 43 H 0.17 5.08 8.06 -2.91 -0.02 5.05 16 44 H 0.09 1.85 7.80 -2.39 -0.02 1.83 16 45 H 0.05 1.16 8.04 -2.39 -0.02 1.14 16 46 H 0.10 1.25 8.14 -2.39 -0.02 1.24 16 47 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 49 H 0.08 0.68 8.13 -2.39 -0.02 0.67 16 50 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.10 1.28 8.13 -2.39 -0.02 1.27 16 52 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 53 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 54 H 0.09 2.04 7.64 -2.39 -0.02 2.02 16 55 H 0.19 3.69 8.02 -2.91 -0.02 3.66 16 Total: -1.00 -63.35 424.18 -2.17 -65.51 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.84 Total: 18.61 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 9.71 Total: 11.79 kcal Atomic # 7 Polarization: -127.25 SS G_CDS: -14.73 Total: -141.98 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -63.35 -2.17 -65.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768153905.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.937 kcal (2) G-P(sol) polarization free energy of solvation -63.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds