Wall clock time and date at job start Wed Apr 1 2020 05:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42898 * 114.00101 * 2 1 4 4 C 1.53002 * 109.47451 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47296 * 64.99481 * 4 3 2 6 6 C 1.46504 * 119.99413 * 90.00332 * 5 4 3 7 7 C 1.50698 * 109.47171 * 95.54110 * 6 5 4 8 8 H 1.08004 * 119.99594 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00129 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00190 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00116 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47114 * 59.99573 * 11 9 7 13 13 H 1.48497 * 109.47145 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46880 * 299.99753 * 11 9 7 15 15 C 1.34771 * 120.00027 * 270.27918 * 5 4 3 16 16 O 1.21621 * 120.00538 * 4.91896 * 15 5 4 17 17 C 1.47243 * 119.99529 * 184.91461 * 15 5 4 18 18 N 1.30584 * 125.53638 * 5.73933 * 17 15 5 19 19 C 1.30733 * 115.89814 * 179.77807 * 18 17 15 20 20 Br 1.89098 * 122.11791 * 180.23742 * 19 18 17 21 21 C 1.34310 * 115.76270 * 0.52017 * 19 18 17 22 22 S 1.71062 * 109.09392 * 359.72019 * 21 19 18 23 23 H 1.09004 * 109.47383 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47267 * 299.99526 * 1 2 3 25 25 H 1.08994 * 109.47415 * 60.00239 * 1 2 3 26 26 H 1.08994 * 109.47179 * 59.99940 * 3 2 1 27 27 H 1.09003 * 109.47293 * 299.99989 * 3 2 1 28 28 H 1.09005 * 109.46926 * 305.00072 * 4 3 2 29 29 H 1.09000 * 109.47531 * 185.00178 * 4 3 2 30 30 H 1.09007 * 109.46853 * 215.53712 * 6 5 4 31 31 H 1.08994 * 109.47322 * 335.53617 * 6 5 4 32 32 H 0.97000 * 120.00121 * 179.97438 * 10 9 7 33 33 H 1.08002 * 125.45302 * 179.74933 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2864 1.4006 -2.4148 7 6 5.7687 1.6684 -2.4590 8 1 6.4147 1.2571 -1.6974 9 6 6.3002 2.4384 -3.4717 10 7 5.5137 2.9388 -4.3994 11 14 8.1376 2.7709 -3.5262 12 1 8.8707 1.4837 -3.6316 13 1 8.4527 3.6174 -4.7048 14 1 8.5501 3.4753 -2.2857 15 6 4.0895 -0.7759 -1.3371 16 8 3.7420 -1.4757 -0.4051 17 6 4.6345 -1.3929 -2.5579 18 7 5.1361 -0.7470 -3.5759 19 6 5.5718 -1.4858 -4.5625 20 35 6.3377 -0.7340 -6.1195 21 6 5.4356 -2.8124 -4.4027 22 16 4.7087 -3.1216 -2.8854 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6886 1.8463 0.8899 27 1 1.6885 1.8464 -0.8900 28 1 3.8514 0.5682 0.8410 29 1 3.9785 2.1765 0.0890 30 1 3.9831 0.8842 -3.3256 31 1 3.7486 2.3455 -2.3366 32 1 5.8876 3.4808 -5.1116 33 1 5.7373 -3.5637 -5.1176 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779766034.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:15 Heat of formation + Delta-G solvation = -8.164837 kcal Electronic energy + Delta-G solvation = -21028.812372 eV Core-core repulsion = 17650.285928 eV Total energy + Delta-G solvation = -3378.526444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.75490 -38.53422 -37.26652 -34.95949 -32.44762 -31.59064 -30.00028 -28.88300 -26.98887 -26.27828 -25.40923 -22.89316 -22.49749 -20.44445 -18.89248 -17.55514 -16.60318 -16.27135 -16.03997 -15.70771 -15.14740 -14.71727 -14.65055 -14.40403 -14.14486 -13.37283 -13.11000 -12.87036 -12.23671 -12.21299 -11.75367 -11.60611 -11.39770 -11.20749 -10.93348 -10.72904 -10.63237 -10.42056 -10.09618 -9.83061 -9.68061 -9.50234 -9.33970 -9.33240 -8.85925 -8.35535 -8.27169 -7.69086 -5.93482 -3.92554 0.60036 1.33988 1.59543 2.43753 2.71842 3.35924 3.39988 3.44123 3.81474 3.89165 4.16235 4.51017 4.81195 5.28318 5.34365 5.36971 5.44340 5.46378 5.61039 5.64351 5.68652 5.81505 5.90472 6.07154 6.32828 6.78940 7.42812 7.48940 7.64507 7.87389 7.97265 8.27469 8.30956 8.84920 9.05621 9.68264 11.14979 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.005974 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.005047 B = 4685.630310 C = 6303.367125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.044 3.956 4 C 0.124 3.876 5 N -0.567 5.567 6 C 0.237 3.763 7 C -0.505 4.505 8 H 0.050 0.950 9 C 0.082 3.918 10 N -0.883 5.883 11 Si 0.875 3.125 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.280 1.280 15 C 0.595 3.405 16 O -0.543 6.543 17 C 0.014 3.986 18 N -0.331 5.331 19 C 0.062 3.938 20 Br 0.011 6.989 21 C -0.264 4.264 22 S 0.214 5.786 23 H 0.080 0.920 24 H 0.034 0.966 25 H 0.035 0.965 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.029 0.971 32 H 0.260 0.740 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.103 -8.261 -0.137 9.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C -0.034 4.034 4 C 0.000 4.000 5 N -0.297 5.297 6 C 0.118 3.882 7 C -0.544 4.544 8 H 0.068 0.932 9 C -0.121 4.121 10 N -0.521 5.521 11 Si 0.704 3.296 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.206 1.206 15 C 0.378 3.622 16 O -0.421 6.421 17 C -0.265 4.265 18 N -0.046 5.046 19 C -0.156 4.156 20 Br 0.094 6.906 21 C -0.408 4.408 22 S 0.469 5.531 23 H 0.098 0.902 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -4.190 -8.693 0.189 9.652 hybrid contribution 1.269 0.875 -0.868 1.769 sum -2.922 -7.818 -0.679 8.374 Atomic orbital electron populations 1.22671 0.82489 1.02139 0.99222 1.88130 1.18243 1.27113 1.95177 1.23051 0.95126 0.85217 0.99996 1.21442 0.91359 0.99586 0.87642 1.48009 1.62241 1.05104 1.14388 1.19765 0.96569 0.89448 0.82383 1.21070 0.92081 1.30941 1.10298 0.93163 1.24608 0.96665 0.95701 0.95153 1.69873 1.34505 1.34308 1.13454 0.86914 0.87109 0.78357 0.77267 1.20162 1.21300 1.20627 1.16583 0.78630 0.83003 0.83940 1.90781 1.51150 1.62122 1.38083 1.27941 1.06728 0.92300 0.99532 1.67456 1.05739 1.33520 0.97918 1.21872 1.06688 0.89573 0.97425 1.96714 1.80893 1.86254 1.26749 1.26662 1.09666 0.99809 1.04646 1.83787 1.51694 1.09802 1.07830 0.90176 0.94741 0.94622 0.93040 0.93022 0.89956 0.88356 0.92278 0.95344 0.93031 0.79874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.42 9.25 -48.62 -0.45 -6.87 16 3 C 0.04 0.69 6.28 37.16 0.23 0.93 16 4 C 0.12 2.20 5.82 -4.04 -0.02 2.18 16 5 N -0.57 -12.14 2.45 -176.39 -0.43 -12.57 16 6 C 0.24 5.71 4.75 -5.19 -0.02 5.68 16 7 C -0.50 -13.14 7.71 -34.44 -0.27 -13.41 16 8 H 0.05 1.36 7.81 -52.48 -0.41 0.95 16 9 C 0.08 2.16 5.46 -17.82 -0.10 2.07 16 10 N -0.88 -24.14 13.29 55.43 0.74 -23.41 16 11 Si 0.88 21.26 29.54 -169.99 -5.02 16.24 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 C 0.60 12.94 7.30 -12.60 -0.09 12.85 16 16 O -0.54 -12.15 15.51 -8.13 -0.13 -12.28 16 17 C 0.01 0.28 7.09 -14.42 -0.10 0.18 16 18 N -0.33 -7.25 6.04 -9.90 -0.06 -7.31 16 19 C 0.06 1.19 7.10 -19.41 -0.14 1.05 16 20 Br 0.01 0.21 33.97 -68.01 -2.31 -2.10 16 21 C -0.26 -4.04 10.90 29.35 0.32 -3.72 16 22 S 0.21 3.36 23.03 -107.50 -2.48 0.88 16 23 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.08 1.47 7.50 -51.93 -0.39 1.08 16 29 H 0.10 1.62 8.07 -51.93 -0.42 1.20 16 30 H 0.06 1.54 5.90 -51.93 -0.31 1.23 16 31 H 0.03 0.71 8.03 -51.93 -0.42 0.29 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.18 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 322.21 15.07 4.86 4.86 Total: -1.00 -30.33 322.21 -7.98 -38.30 By element: Atomic # 1 Polarization: -1.45 SS G_CDS: -3.61 Total: -5.06 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 0.92 Total: 9.33 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.24 Total: -43.29 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.58 Total: -19.15 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -2.48 Total: 0.88 kcal Atomic # 35 Polarization: 0.21 SS G_CDS: -2.31 Total: -2.10 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.33 -7.98 -38.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779766034.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.136 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds