Wall clock time and date at job start Wed Apr 1 2020 05:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42898 * 114.00101 * 2 1 4 4 C 1.53002 * 109.47451 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47296 * 64.99481 * 4 3 2 6 6 C 1.46504 * 119.99413 * 90.00332 * 5 4 3 7 7 C 1.50698 * 109.47171 * 95.54110 * 6 5 4 8 8 H 1.08004 * 119.99594 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00129 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00190 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00116 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47114 * 59.99573 * 11 9 7 13 13 H 1.48497 * 109.47145 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46880 * 299.99753 * 11 9 7 15 15 C 1.34771 * 120.00027 * 270.27918 * 5 4 3 16 16 O 1.21621 * 120.00538 * 4.91896 * 15 5 4 17 17 C 1.47243 * 119.99529 * 184.91461 * 15 5 4 18 18 N 1.30584 * 125.53638 * 5.73933 * 17 15 5 19 19 C 1.30733 * 115.89814 * 179.77807 * 18 17 15 20 20 Br 1.89098 * 122.11791 * 180.23742 * 19 18 17 21 21 C 1.34310 * 115.76270 * 0.52017 * 19 18 17 22 22 S 1.71062 * 109.09392 * 359.72019 * 21 19 18 23 23 H 1.09004 * 109.47383 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47267 * 299.99526 * 1 2 3 25 25 H 1.08994 * 109.47415 * 60.00239 * 1 2 3 26 26 H 1.08994 * 109.47179 * 59.99940 * 3 2 1 27 27 H 1.09003 * 109.47293 * 299.99989 * 3 2 1 28 28 H 1.09005 * 109.46926 * 305.00072 * 4 3 2 29 29 H 1.09000 * 109.47531 * 185.00178 * 4 3 2 30 30 H 1.09007 * 109.46853 * 215.53712 * 6 5 4 31 31 H 1.08994 * 109.47322 * 335.53617 * 6 5 4 32 32 H 0.97000 * 120.00121 * 179.97438 * 10 9 7 33 33 H 1.08002 * 125.45302 * 179.74933 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.2864 1.4006 -2.4148 7 6 5.7687 1.6684 -2.4590 8 1 6.4147 1.2571 -1.6974 9 6 6.3002 2.4384 -3.4717 10 7 5.5137 2.9388 -4.3994 11 14 8.1376 2.7709 -3.5262 12 1 8.8707 1.4837 -3.6316 13 1 8.4527 3.6174 -4.7048 14 1 8.5501 3.4753 -2.2857 15 6 4.0895 -0.7759 -1.3371 16 8 3.7420 -1.4757 -0.4051 17 6 4.6345 -1.3929 -2.5579 18 7 5.1361 -0.7470 -3.5759 19 6 5.5718 -1.4858 -4.5625 20 35 6.3377 -0.7340 -6.1195 21 6 5.4356 -2.8124 -4.4027 22 16 4.7087 -3.1216 -2.8854 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.6886 1.8463 0.8899 27 1 1.6885 1.8464 -0.8900 28 1 3.8514 0.5682 0.8410 29 1 3.9785 2.1765 0.0890 30 1 3.9831 0.8842 -3.3256 31 1 3.7486 2.3455 -2.3366 32 1 5.8876 3.4808 -5.1116 33 1 5.7373 -3.5637 -5.1176 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779766034.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:15 Heat of formation + Delta-G solvation = -26.648704 kcal Electronic energy + Delta-G solvation = -21029.613892 eV Core-core repulsion = 17650.285928 eV Total energy + Delta-G solvation = -3379.327965 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.26957 -40.02306 -38.55992 -36.63963 -34.38911 -33.00393 -31.43266 -30.26699 -28.83888 -27.50915 -26.75417 -24.79646 -23.88250 -21.91139 -20.34161 -19.05240 -18.46227 -17.79705 -17.42732 -17.09953 -16.63393 -16.38427 -16.09003 -15.84239 -15.64277 -14.85475 -14.52163 -14.38438 -14.12667 -13.52909 -13.34366 -13.01344 -12.95031 -12.75093 -12.61807 -12.46617 -12.07179 -11.90763 -11.83767 -11.59491 -11.26461 -11.18973 -10.71721 -10.54084 -10.43824 -10.21382 -9.74938 -9.37615 -7.97388 -6.00613 -0.77993 0.02093 0.18936 1.09010 1.23388 1.40979 1.44129 1.48292 2.25353 2.33921 2.54288 2.99199 3.30544 3.39183 3.93997 4.10604 4.18822 4.25636 4.42877 4.51182 4.56708 4.58981 4.67784 4.86129 4.93828 5.05471 5.49393 5.81466 5.92822 6.30451 6.36626 6.45418 6.55341 6.98577 7.25789 7.62815 9.09879 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.011501 B = 0.005974 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.005047 B = 4685.630310 C = 6303.367125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.050 3.950 4 C 0.116 3.884 5 N -0.574 5.574 6 C 0.260 3.740 7 C -0.501 4.501 8 H 0.034 0.966 9 C 0.053 3.947 10 N -0.903 5.903 11 Si 0.914 3.086 12 H -0.280 1.280 13 H -0.284 1.284 14 H -0.276 1.276 15 C 0.591 3.409 16 O -0.557 6.557 17 C -0.042 4.042 18 N -0.365 5.365 19 C 0.024 3.976 20 Br 0.006 6.994 21 C -0.232 4.232 22 S 0.302 5.698 23 H 0.088 0.912 24 H 0.057 0.943 25 H 0.038 0.962 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.041 0.959 31 H 0.015 0.985 32 H 0.259 0.741 33 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.221 -9.694 0.063 10.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.027 4.027 4 C -0.006 4.006 5 N -0.304 5.304 6 C 0.139 3.861 7 C -0.540 4.540 8 H 0.053 0.947 9 C -0.148 4.148 10 N -0.543 5.543 11 Si 0.741 3.259 12 H -0.206 1.206 13 H -0.209 1.209 14 H -0.202 1.202 15 C 0.375 3.625 16 O -0.437 6.437 17 C -0.318 4.318 18 N -0.082 5.082 19 C -0.193 4.193 20 Br 0.088 6.912 21 C -0.376 4.376 22 S 0.556 5.444 23 H 0.107 0.893 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.103 0.897 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.124 0.876 30 H 0.059 0.941 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -4.321 -10.111 0.420 11.004 hybrid contribution 1.265 1.144 -0.919 1.937 sum -3.056 -8.967 -0.499 9.486 Atomic orbital electron populations 1.22852 0.80395 1.03172 1.00473 1.88073 1.20653 1.27942 1.95448 1.22983 0.93437 0.85082 1.01201 1.21659 0.93209 0.99646 0.86123 1.48011 1.62522 1.05201 1.14688 1.19280 0.95162 0.88762 0.82880 1.21084 0.92841 1.30399 1.09661 0.94742 1.25006 0.99016 0.95766 0.95017 1.69947 1.35463 1.35013 1.13874 0.86303 0.84200 0.77953 0.77412 1.20628 1.20914 1.20170 1.16819 0.78266 0.82949 0.84418 1.90746 1.52022 1.62216 1.38761 1.27787 1.09137 0.95440 0.99435 1.67305 1.06226 1.35840 0.98789 1.21999 1.09016 0.90829 0.97505 1.96678 1.81033 1.86776 1.26685 1.27219 1.06142 0.99283 1.04992 1.83451 1.49225 1.05184 1.06493 0.89348 0.92475 0.94300 0.89655 0.93778 0.90202 0.87582 0.94132 0.96671 0.93209 0.75720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.40 -13.70 9.25 -136.18 -1.26 -14.96 16 3 C 0.05 1.55 6.28 71.98 0.45 2.00 16 4 C 0.12 4.15 5.82 86.38 0.50 4.66 16 5 N -0.57 -24.95 2.45 -830.24 -2.04 -26.99 16 6 C 0.26 12.76 4.75 85.63 0.41 13.16 16 7 C -0.50 -26.46 7.71 25.60 0.20 -26.26 16 8 H 0.03 1.90 7.81 -2.91 -0.02 1.88 16 9 C 0.05 2.81 5.46 84.65 0.46 3.28 16 10 N -0.90 -49.89 13.29 21.45 0.28 -49.60 16 11 Si 0.91 43.49 29.54 68.60 2.03 45.52 16 12 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 13 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 14 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 15 C 0.59 25.83 7.30 86.61 0.63 26.46 16 16 O -0.56 -24.85 15.51 8.70 0.13 -24.72 16 17 C -0.04 -1.69 7.09 87.25 0.62 -1.07 16 18 N -0.36 -15.95 6.04 -185.24 -1.12 -17.07 16 19 C 0.02 0.89 7.10 83.96 0.60 1.48 16 20 Br 0.01 0.21 33.97 -20.37 -0.69 -0.48 16 21 C -0.23 -6.40 10.90 66.92 0.73 -5.67 16 22 S 0.30 8.68 23.03 -56.49 -1.30 7.37 16 23 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 28 H 0.08 2.86 7.50 -2.38 -0.02 2.85 16 29 H 0.11 3.51 8.07 -2.39 -0.02 3.49 16 30 H 0.04 2.18 5.90 -2.38 -0.01 2.17 16 31 H 0.02 0.78 8.03 -2.39 -0.02 0.76 16 32 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 33 H 0.23 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -65.74 322.21 3.02 -62.72 By element: Atomic # 1 Polarization: -2.89 SS G_CDS: 1.14 Total: -1.75 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 5.85 Total: 19.96 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -2.87 Total: -93.66 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -1.13 Total: -39.68 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 8.68 SS G_CDS: -1.30 Total: 7.37 kcal Atomic # 35 Polarization: 0.21 SS G_CDS: -0.69 Total: -0.48 kcal Total: -65.74 3.02 -62.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779766034.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.074 kcal (2) G-P(sol) polarization free energy of solvation -65.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds