Wall clock time and date at job start Wed Apr 1 2020 05:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99693 * 2 1 4 4 H 1.48503 * 109.46723 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47312 * 300.00236 * 3 2 1 6 6 H 1.48496 * 109.47080 * 60.00488 * 3 2 1 7 7 C 1.37876 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99703 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46914 * 180.02562 * 9 7 2 11 11 C 1.34783 * 119.99790 * 179.97438 * 10 9 7 12 12 O 1.21275 * 119.99981 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.99567 * 179.97438 * 11 10 9 14 14 O 1.42902 * 109.46550 * 180.02562 * 13 11 10 15 15 C 1.35922 * 116.99702 * 179.97438 * 14 13 11 16 16 C 1.38725 * 120.03660 * 0.02562 * 15 14 13 17 17 C 1.38229 * 119.94900 * 179.97438 * 16 15 14 18 18 Cl 1.73596 * 119.99622 * 179.97438 * 17 16 15 19 19 C 1.38507 * 120.01508 * 0.02562 * 17 16 15 20 20 Cl 1.73593 * 119.96488 * 180.02562 * 19 17 16 21 21 C 1.38326 * 120.07130 * 359.97438 * 19 17 16 22 22 C 1.38173 * 120.05290 * 0.02562 * 21 19 17 23 23 N 1.48019 * 120.00561 * 180.02562 * 22 21 19 24 24 O 1.21804 * 120.00163 * 359.97102 * 23 22 21 25 25 O 1.21799 * 120.00060 * 179.97438 * 23 22 21 26 26 H 0.96999 * 119.99903 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47555 * 60.00294 * 9 7 2 28 28 H 1.09001 * 109.47557 * 300.00049 * 9 7 2 29 29 H 0.96998 * 120.00160 * 359.97438 * 10 9 7 30 30 H 1.08997 * 109.47095 * 59.99887 * 13 11 10 31 31 H 1.09003 * 109.46559 * 299.99637 * 13 11 10 32 32 H 1.08002 * 120.02710 * 359.70583 * 16 15 14 33 33 H 1.07998 * 119.96796 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5615 -5.1049 0.0009 13 6 2.7332 -6.0288 -0.0006 14 8 2.0187 -7.2663 -0.0005 15 6 2.7590 -8.4062 -0.0015 16 6 4.1444 -8.3345 -0.0021 17 6 4.8955 -9.4949 -0.0026 18 17 6.6292 -9.4066 -0.0039 19 6 4.2651 -10.7282 -0.0031 20 17 5.2096 -12.1847 -0.0030 21 6 2.8837 -10.8006 -0.0025 22 6 2.1301 -9.6425 -0.0020 23 7 0.6520 -9.7212 -0.0008 24 8 0.0999 -10.8069 -0.0008 25 8 -0.0122 -8.7002 0.0001 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 3.1568 -3.4354 -0.0009 30 1 3.3606 -5.9708 0.8889 31 1 3.3591 -5.9711 -0.8912 32 1 4.6357 -7.3727 -0.0065 33 1 2.3940 -11.7632 -0.0033 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794495173.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:06 Heat of formation + Delta-G solvation = -57.126598 kcal Electronic energy + Delta-G solvation = -24707.218614 eV Core-core repulsion = 20403.119914 eV Total energy + Delta-G solvation = -4304.098700 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.016 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.36949 -40.93232 -39.31537 -38.25647 -37.38631 -36.95417 -36.46225 -34.36013 -32.58536 -32.44229 -31.16354 -29.24272 -26.90268 -26.71890 -23.85799 -22.98653 -22.51950 -20.17109 -19.91140 -18.84146 -18.61281 -17.73164 -17.68043 -16.87344 -16.69758 -16.68828 -15.77698 -15.48331 -15.16488 -14.95191 -14.64900 -14.13597 -14.12269 -13.59797 -13.02268 -12.67690 -12.62516 -12.57336 -12.07572 -11.95789 -11.83986 -11.71828 -11.54981 -11.27298 -11.15561 -11.06689 -11.04179 -10.97247 -10.40548 -10.13966 -9.48884 -9.31828 -9.19708 -8.85180 -8.08139 -6.24823 -4.32943 -0.68474 0.06483 0.90240 0.93391 0.97131 1.46840 2.11876 2.35298 3.01076 3.18192 3.25274 3.27839 3.48653 3.68785 3.81541 4.02606 4.26089 4.31822 4.48666 4.60254 4.65056 4.78578 4.79099 5.11641 5.12971 5.21144 6.13889 6.38372 7.15492 7.20541 7.39432 7.52928 7.57878 7.85826 8.38505 8.63009 8.86007 9.33680 10.85198 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.015297 B = 0.002382 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.025887 B =11753.894113 C =13563.474269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.705 5.705 11 C 0.499 3.501 12 O -0.515 6.515 13 C 0.024 3.976 14 O -0.239 6.239 15 C 0.222 3.778 16 C -0.200 4.200 17 C 0.056 3.944 18 Cl -0.014 7.014 19 C -0.082 4.082 20 Cl -0.022 7.022 21 C 0.005 3.995 22 C -0.071 4.071 23 N 0.028 4.972 24 O -0.177 6.177 25 O -0.099 6.099 26 H 0.267 0.733 27 H 0.031 0.969 28 H 0.031 0.969 29 H 0.392 0.608 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.173 0.827 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.436 -22.765 -0.013 27.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.280 3.720 12 O -0.390 6.390 13 C -0.054 4.054 14 O -0.147 6.147 15 C 0.169 3.831 16 C -0.220 4.220 17 C 0.028 3.972 18 Cl 0.016 6.984 19 C -0.111 4.111 20 Cl 0.007 6.993 21 C -0.015 4.015 22 C -0.156 4.156 23 N 0.550 4.450 24 O -0.385 6.385 25 O -0.325 6.325 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.224 0.776 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.190 0.810 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 15.115 -22.888 -0.013 27.428 hybrid contribution 1.089 0.954 -0.001 1.448 sum 16.205 -21.934 -0.014 27.270 Atomic orbital electron populations 1.69980 1.06109 1.27399 1.48455 1.24956 0.94932 0.99510 0.94585 0.86344 0.79733 0.82873 0.77844 1.19651 1.20742 1.20736 1.21206 0.93280 0.90239 1.53741 0.91767 1.19211 0.88097 0.81357 0.98215 1.46357 1.11477 1.05152 1.72622 1.19601 0.89019 0.83701 0.79663 1.90802 1.15815 1.84087 1.48344 1.23090 0.95950 0.82143 1.04216 1.86593 1.32590 1.11293 1.84228 1.18607 0.89592 0.86410 0.88448 1.21192 0.90995 0.99904 1.09892 1.20832 0.87521 0.92504 0.96357 1.98456 1.05734 1.98546 1.95711 1.20244 0.91194 0.88281 1.11343 1.98426 1.70960 1.33031 1.96907 1.20644 0.90984 0.98715 0.91159 1.20383 0.81867 0.92881 1.20458 1.43185 1.02097 1.01065 0.98661 1.94528 1.72529 1.16441 1.54996 1.94786 1.62987 1.24320 1.50446 0.92335 0.95113 0.95120 0.77558 0.88240 0.88254 0.80965 0.80490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.24 13.29 55.43 0.74 -24.50 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.55 -14.02 9.28 -34.44 -0.32 -14.33 16 8 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 9 C 0.25 6.26 5.43 -5.19 -0.03 6.24 16 10 N -0.71 -13.21 5.55 -61.47 -0.34 -13.55 16 11 C 0.50 9.00 7.91 -10.98 -0.09 8.91 16 12 O -0.52 -12.09 16.50 -14.35 -0.24 -12.33 16 13 C 0.02 0.28 5.22 36.01 0.19 0.47 16 14 O -0.24 -3.32 7.68 -49.86 -0.38 -3.70 16 15 C 0.22 2.39 6.67 -39.23 -0.26 2.13 16 16 C -0.20 -1.52 8.82 -39.40 -0.35 -1.86 16 17 C 0.06 0.41 6.32 -39.49 -0.25 0.16 16 18 Cl -0.01 -0.09 27.95 -51.86 -1.45 -1.54 16 19 C -0.08 -0.62 6.32 -39.45 -0.25 -0.87 16 20 Cl -0.02 -0.15 27.95 -51.86 -1.45 -1.60 16 21 C 0.00 0.04 9.33 -39.57 -0.37 -0.33 16 22 C -0.07 -0.80 6.87 -79.80 -0.55 -1.35 16 23 N 0.03 0.42 4.45 34.03 0.15 0.57 16 24 O -0.18 -2.54 18.45 -29.46 -0.54 -3.09 16 25 O -0.10 -1.75 17.24 -36.50 -0.63 -2.38 16 26 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.39 5.85 8.32 -40.82 -0.34 5.51 16 30 H 0.10 0.80 7.67 -51.93 -0.40 0.40 16 31 H 0.10 0.79 7.66 -51.93 -0.40 0.40 16 32 H 0.17 0.87 6.30 -52.49 -0.33 0.54 16 33 H 0.18 1.20 7.61 -52.49 -0.40 0.80 16 LS Contribution 337.27 15.07 5.08 5.08 Total: -1.00 -33.14 337.27 -8.70 -41.83 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -2.24 Total: -0.62 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -2.37 Total: 0.78 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.55 Total: -37.48 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -1.79 Total: -21.49 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -2.90 Total: -3.14 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.14 -8.70 -41.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794495173.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.295 kcal (2) G-P(sol) polarization free energy of solvation -33.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds