Wall clock time and date at job start Wed Apr 1 2020 05:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99693 * 2 1 4 4 H 1.48503 * 109.46723 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47312 * 300.00236 * 3 2 1 6 6 H 1.48496 * 109.47080 * 60.00488 * 3 2 1 7 7 C 1.37876 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99703 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46914 * 180.02562 * 9 7 2 11 11 C 1.34783 * 119.99790 * 179.97438 * 10 9 7 12 12 O 1.21275 * 119.99981 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.99567 * 179.97438 * 11 10 9 14 14 O 1.42902 * 109.46550 * 180.02562 * 13 11 10 15 15 C 1.35922 * 116.99702 * 179.97438 * 14 13 11 16 16 C 1.38725 * 120.03660 * 0.02562 * 15 14 13 17 17 C 1.38229 * 119.94900 * 179.97438 * 16 15 14 18 18 Cl 1.73596 * 119.99622 * 179.97438 * 17 16 15 19 19 C 1.38507 * 120.01508 * 0.02562 * 17 16 15 20 20 Cl 1.73593 * 119.96488 * 180.02562 * 19 17 16 21 21 C 1.38326 * 120.07130 * 359.97438 * 19 17 16 22 22 C 1.38173 * 120.05290 * 0.02562 * 21 19 17 23 23 N 1.48019 * 120.00561 * 180.02562 * 22 21 19 24 24 O 1.21804 * 120.00163 * 359.97102 * 23 22 21 25 25 O 1.21799 * 120.00060 * 179.97438 * 23 22 21 26 26 H 0.96999 * 119.99903 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47555 * 60.00294 * 9 7 2 28 28 H 1.09001 * 109.47557 * 300.00049 * 9 7 2 29 29 H 0.96998 * 120.00160 * 359.97438 * 10 9 7 30 30 H 1.08997 * 109.47095 * 59.99887 * 13 11 10 31 31 H 1.09003 * 109.46559 * 299.99637 * 13 11 10 32 32 H 1.08002 * 120.02710 * 359.70583 * 16 15 14 33 33 H 1.07998 * 119.96796 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5615 -5.1049 0.0009 13 6 2.7332 -6.0288 -0.0006 14 8 2.0187 -7.2663 -0.0005 15 6 2.7590 -8.4062 -0.0015 16 6 4.1444 -8.3345 -0.0021 17 6 4.8955 -9.4949 -0.0026 18 17 6.6292 -9.4066 -0.0039 19 6 4.2651 -10.7282 -0.0031 20 17 5.2096 -12.1847 -0.0030 21 6 2.8837 -10.8006 -0.0025 22 6 2.1301 -9.6425 -0.0020 23 7 0.6520 -9.7212 -0.0008 24 8 0.0999 -10.8069 -0.0008 25 8 -0.0122 -8.7002 0.0001 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 3.1568 -3.4354 -0.0009 30 1 3.3606 -5.9708 0.8889 31 1 3.3591 -5.9711 -0.8912 32 1 4.6357 -7.3727 -0.0065 33 1 2.3940 -11.7632 -0.0033 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794495173.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:05 Heat of formation + Delta-G solvation = -78.668402 kcal Electronic energy + Delta-G solvation = -24708.152737 eV Core-core repulsion = 20403.119914 eV Total energy + Delta-G solvation = -4305.032823 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.016 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.36820 -41.85061 -40.53159 -39.30733 -37.96647 -37.66352 -37.53229 -36.18134 -34.40948 -33.28000 -31.95634 -30.56144 -28.52334 -27.67669 -25.05968 -24.03900 -23.80980 -21.64898 -20.87803 -19.85990 -19.50366 -19.15111 -18.70312 -17.99996 -17.66644 -17.55696 -17.20384 -16.91708 -16.15888 -16.05535 -16.02715 -15.22883 -15.11046 -14.65786 -14.21561 -14.04638 -13.99350 -13.45402 -13.23284 -13.15440 -12.89104 -12.75226 -12.72725 -12.53553 -12.37072 -12.26215 -12.20753 -12.11083 -12.05046 -11.45294 -10.89424 -10.82149 -10.77319 -9.93836 -9.87841 -8.28315 -6.45029 -1.54841 -0.59814 -0.08565 0.11751 0.34496 0.76158 1.22740 1.45833 1.46131 1.59480 1.59508 1.63908 2.34093 2.54249 2.94162 2.99196 3.07434 3.26982 3.52804 3.76366 3.81657 3.91127 3.97721 4.09063 4.12167 4.56677 5.07037 5.12073 5.23561 5.43871 5.53043 5.68585 5.83829 6.39370 6.65379 6.81130 7.23524 7.41747 8.84064 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.015297 B = 0.002382 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.025887 B =11753.894113 C =13563.474269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.985 3.015 4 H -0.248 1.248 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.552 4.552 8 H 0.090 0.910 9 C 0.266 3.734 10 N -0.696 5.696 11 C 0.493 3.507 12 O -0.581 6.581 13 C 0.035 3.965 14 O -0.278 6.278 15 C 0.213 3.787 16 C -0.183 4.183 17 C 0.064 3.936 18 Cl 0.003 6.997 19 C -0.075 4.075 20 Cl -0.010 7.010 21 C 0.013 3.987 22 C -0.087 4.087 23 N 0.033 4.967 24 O -0.151 6.151 25 O -0.191 6.191 26 H 0.268 0.732 27 H -0.011 1.011 28 H -0.011 1.011 29 H 0.415 0.585 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.206 0.794 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.251 -23.648 -0.016 31.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.808 3.192 4 H -0.172 1.172 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.589 4.589 8 H 0.108 0.892 9 C 0.143 3.857 10 N -0.348 5.348 11 C 0.278 3.722 12 O -0.461 6.461 13 C -0.042 4.042 14 O -0.187 6.187 15 C 0.161 3.839 16 C -0.202 4.202 17 C 0.035 3.965 18 Cl 0.033 6.967 19 C -0.104 4.104 20 Cl 0.019 6.981 21 C -0.007 4.007 22 C -0.173 4.173 23 N 0.548 4.452 24 O -0.371 6.371 25 O -0.397 6.397 26 H 0.077 0.923 27 H 0.007 0.993 28 H 0.007 0.993 29 H 0.252 0.748 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.223 0.777 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 19.969 -23.640 -0.017 30.945 hybrid contribution -0.262 0.928 0.000 0.964 sum 19.707 -22.712 -0.016 30.070 Atomic orbital electron populations 1.70154 1.08380 1.28502 1.50067 1.26083 0.95724 1.04006 0.93995 0.85111 0.79291 0.77345 0.77458 1.17163 1.20781 1.20773 1.21639 0.94511 0.90169 1.52613 0.89156 1.18598 0.88669 0.84036 0.94377 1.45957 1.11666 1.04459 1.72744 1.20742 0.89424 0.84839 0.77172 1.90782 1.19322 1.85154 1.50794 1.23085 0.93495 0.78955 1.08629 1.86551 1.34526 1.12513 1.85084 1.18739 0.90617 0.85099 0.89396 1.21428 0.89215 1.01428 1.08161 1.20933 0.88317 0.92280 0.94965 1.98476 1.04343 1.98499 1.95426 1.20293 0.90850 0.88994 1.10289 1.98442 1.70446 1.32409 1.96766 1.20773 0.91262 0.98293 0.90374 1.20548 0.79291 0.94497 1.22940 1.43619 1.03734 1.00388 0.97509 1.94460 1.73884 1.16260 1.52509 1.94814 1.64668 1.24798 1.55376 0.92317 0.99313 0.99323 0.74815 0.83593 0.83605 0.77733 0.78995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.36 13.29 21.45 0.28 -55.08 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.98 40.76 29.54 68.60 2.03 42.79 16 4 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 5 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.55 -28.34 9.28 25.60 0.24 -28.10 16 8 H 0.09 4.07 7.60 -2.91 -0.02 4.04 16 9 C 0.27 13.90 5.43 85.63 0.46 14.37 16 10 N -0.70 -26.06 5.55 -466.78 -2.59 -28.65 16 11 C 0.49 18.03 7.91 87.66 0.69 18.73 16 12 O -0.58 -29.21 16.50 16.02 0.26 -28.95 16 13 C 0.04 0.72 5.22 71.24 0.37 1.09 16 14 O -0.28 -7.58 7.68 -63.64 -0.49 -8.07 16 15 C 0.21 4.23 6.67 22.50 0.15 4.38 16 16 C -0.18 -2.04 8.82 22.38 0.20 -1.85 16 17 C 0.06 0.68 6.32 22.33 0.14 0.83 16 18 Cl 0.00 0.02 27.95 -2.72 -0.08 -0.05 16 19 C -0.08 -0.90 6.32 22.35 0.14 -0.76 16 20 Cl -0.01 -0.10 27.95 -2.72 -0.08 -0.18 16 21 C 0.01 0.18 9.33 22.28 0.21 0.39 16 22 C -0.09 -1.91 6.87 36.47 0.25 -1.65 16 23 N 0.03 1.02 4.45 -46.23 -0.21 0.81 16 24 O -0.15 -4.37 18.45 18.88 0.35 -4.02 16 25 O -0.19 -7.39 17.24 25.61 0.44 -6.94 16 26 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 27 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 28 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 29 H 0.41 11.45 8.32 -92.71 -0.77 10.68 16 30 H 0.15 1.66 7.67 -2.39 -0.02 1.64 16 31 H 0.15 1.65 7.66 -2.39 -0.02 1.64 16 32 H 0.21 0.86 6.30 -2.91 -0.02 0.84 16 33 H 0.19 2.15 7.61 -2.91 -0.02 2.13 16 Total: -1.00 -80.74 337.27 3.69 -77.06 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: 0.44 Total: 3.32 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 3.32 Total: 7.96 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -2.51 Total: -82.91 kcal Atomic # 8 Polarization: -48.56 SS G_CDS: 0.57 Total: -47.99 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -0.15 Total: -0.23 kcal Total: -80.74 3.69 -77.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794495173.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.610 kcal (2) G-P(sol) polarization free energy of solvation -80.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds