Wall clock time and date at job start Wed Apr 1 2020 05:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28442 * 125.18326 * 2 1 4 4 C 1.30918 * 110.93876 * 180.02562 * 3 2 1 5 5 Br 1.89097 * 126.07245 * 179.97438 * 4 3 2 6 6 C 1.39724 * 107.85713 * 359.73577 * 4 3 2 7 7 C 1.36642 * 125.18590 * 180.02562 * 2 1 3 8 8 C 1.47012 * 126.88845 * 359.97336 * 7 2 1 9 9 O 1.21549 * 120.00338 * 179.97438 * 8 7 2 10 10 O 1.34818 * 119.99687 * 359.97438 * 8 7 2 11 11 C 1.45206 * 116.99731 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47129 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.46965 * 180.02562 * 12 11 10 14 14 S 1.81003 * 109.46891 * 180.02562 * 13 12 11 15 15 C 1.76196 * 99.99843 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00530 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99953 * 179.97438 * 15 14 13 18 18 N 1.31631 * 119.99789 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99828 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47488 * 59.99842 * 19 17 15 21 21 H 1.48502 * 109.47054 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46970 * 299.99459 * 19 17 15 23 23 H 1.08998 * 109.47202 * 269.95732 * 1 2 3 24 24 H 1.08995 * 109.47056 * 29.96605 * 1 2 3 25 25 H 1.08998 * 109.46596 * 149.96188 * 1 2 3 26 26 H 1.08005 * 127.33015 * 180.26410 * 6 4 3 27 27 H 1.09004 * 109.47122 * 299.99985 * 11 10 8 28 28 H 1.09000 * 109.47070 * 60.00010 * 11 10 8 29 29 H 1.09004 * 109.46930 * 299.99887 * 12 11 10 30 30 H 1.09004 * 109.47059 * 59.99488 * 12 11 10 31 31 H 1.09004 * 109.46976 * 299.99579 * 13 12 11 32 32 H 1.08992 * 109.47530 * 59.99431 * 13 12 11 33 33 H 0.96995 * 119.99998 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2051 1.0498 0.0000 4 6 3.4741 0.7276 -0.0005 5 35 4.9293 1.9351 -0.0015 6 6 3.5621 -0.6668 0.0052 7 6 2.2524 -1.1168 -0.0005 8 6 1.8000 -2.5155 -0.0006 9 8 2.6144 -3.4178 -0.0015 10 8 0.4816 -2.7975 0.0004 11 6 0.1076 -4.2005 0.0008 12 6 -1.4176 -4.3218 0.0013 13 6 -1.8117 -5.8001 0.0024 14 16 -3.6160 -5.9435 0.0022 15 6 -3.7835 -7.6975 0.0028 16 1 -2.9038 -8.3241 0.0035 17 6 -5.0461 -8.2742 0.0033 18 7 -6.1183 -7.5106 0.0039 19 14 -5.2236 -10.1337 0.0047 20 1 -4.5737 -10.6921 1.2174 21 1 -6.6644 -10.4934 0.0044 22 1 -4.5740 -10.6938 -1.2076 23 1 -0.3633 -0.0008 1.0276 24 1 -0.3633 0.8902 -0.5133 25 1 -0.3632 -0.8897 -0.5144 26 1 4.4605 -1.2663 0.0103 27 1 0.5099 -4.6841 -0.8894 28 1 0.5111 -4.6838 0.8906 29 1 -1.8203 -3.8381 0.8913 30 1 -1.8208 -3.8385 -0.8887 31 1 -1.4090 -6.2841 -0.8874 32 1 -1.4085 -6.2830 0.8925 33 1 -7.0007 -7.9135 0.0046 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805539192.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:49 Heat of formation + Delta-G solvation = -15.499464 kcal Electronic energy + Delta-G solvation = -18958.331896 eV Core-core repulsion = 15579.487398 eV Total energy + Delta-G solvation = -3378.844497 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.14378 -40.43603 -36.99950 -34.32521 -33.60829 -32.50354 -31.70232 -31.31487 -27.36482 -26.82967 -25.59132 -24.07420 -21.99260 -21.51088 -20.66778 -18.48197 -17.52434 -17.25465 -17.21570 -16.39577 -16.14668 -14.87570 -14.76312 -14.73900 -14.37508 -14.16879 -13.57500 -13.48070 -13.07198 -12.97119 -12.78464 -12.22661 -11.83419 -11.52670 -11.45780 -11.29721 -11.08560 -11.07300 -10.92086 -10.73237 -10.72485 -10.48306 -9.77328 -9.72728 -9.38314 -9.12638 -8.44940 -6.64127 -6.30702 -4.02528 0.54832 0.79429 1.73256 1.93986 2.30512 2.49075 3.16352 3.18974 3.23637 3.44232 3.96226 4.13956 4.17596 4.74013 4.77278 4.84747 4.91362 4.94997 4.99129 5.05999 5.18850 5.27627 5.33786 5.62098 5.63771 5.71194 5.94165 6.01554 6.17095 6.31440 6.53105 7.17188 7.38586 7.53094 8.28625 9.15775 10.77351 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.052044 B = 0.001640 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.879117 B =17067.985593 C =17574.812736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.246 5.246 3 N -0.232 5.232 4 C 0.011 3.989 5 Br 0.038 6.962 6 C -0.117 4.117 7 C -0.017 4.017 8 C 0.541 3.459 9 O -0.484 6.484 10 O -0.355 6.355 11 C 0.073 3.927 12 C -0.098 4.098 13 C -0.116 4.116 14 S -0.123 6.123 15 C -0.520 4.520 16 H 0.073 0.927 17 C 0.072 3.928 18 N -0.869 5.869 19 Si 0.920 3.080 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.273 1.273 23 H 0.096 0.904 24 H 0.103 0.897 25 H 0.116 0.884 26 H 0.178 0.822 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.296 20.152 -0.067 28.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.038 5.038 3 N -0.070 5.070 4 C -0.223 4.223 5 Br 0.120 6.880 6 C -0.147 4.147 7 C -0.142 4.142 8 C 0.383 3.617 9 O -0.370 6.370 10 O -0.272 6.272 11 C -0.002 4.002 12 C -0.136 4.136 13 C -0.264 4.264 14 S 0.106 5.894 15 C -0.668 4.668 16 H 0.092 0.908 17 C -0.137 4.137 18 N -0.505 5.505 19 Si 0.746 3.254 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 H 0.115 0.885 24 H 0.122 0.878 25 H 0.135 0.865 26 H 0.195 0.805 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.126 21.932 -0.067 29.101 hybrid contribution 0.956 -3.158 0.029 3.299 sum 20.082 18.774 -0.038 27.491 Atomic orbital electron populations 1.22624 0.70891 1.06797 1.05875 1.45990 1.08465 1.01646 1.47728 1.73268 1.02484 1.13772 1.17470 1.23379 0.92045 0.93239 1.13599 1.96763 1.33989 1.59209 1.98051 1.22040 0.96207 0.92599 1.03840 1.20707 0.91191 0.86562 1.15788 1.19447 0.81652 0.86847 0.73791 1.90929 1.54807 1.46213 1.45011 1.86522 1.24317 1.32554 1.83775 1.23430 0.97257 0.76270 1.03194 1.21313 0.90749 0.97215 1.04347 1.23181 1.03732 0.96025 1.03485 1.84630 0.96439 1.11459 1.96913 1.22648 0.95189 0.89984 1.58990 0.90845 1.25023 0.94852 0.99417 0.94440 1.69998 0.98028 1.35508 1.46915 0.86197 0.77326 0.82956 0.78918 1.19877 1.20771 1.19881 0.88549 0.87846 0.86528 0.80467 0.90628 0.90614 0.90234 0.90254 0.91632 0.91627 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 10.81 59.85 0.65 1.17 16 2 N -0.25 -2.46 3.75 -63.90 -0.24 -2.70 16 3 N -0.23 -2.53 11.90 31.87 0.38 -2.15 16 4 C 0.01 0.11 7.71 -17.39 -0.13 -0.02 16 5 Br 0.04 0.32 34.11 -68.01 -2.32 -2.00 16 6 C -0.12 -1.20 10.83 -38.94 -0.42 -1.62 16 7 C -0.02 -0.19 6.96 -82.08 -0.57 -0.76 16 8 C 0.54 6.58 7.93 34.29 0.27 6.85 16 9 O -0.48 -7.01 16.71 -19.30 -0.32 -7.33 16 10 O -0.35 -4.06 7.68 -40.82 -0.31 -4.38 16 11 C 0.07 0.90 5.48 37.16 0.20 1.11 16 12 C -0.10 -1.38 5.60 -26.73 -0.15 -1.53 16 13 C -0.12 -2.13 5.67 37.16 0.21 -1.92 16 14 S -0.12 -3.03 21.44 -107.50 -2.30 -5.34 16 15 C -0.52 -14.40 9.50 30.94 0.29 -14.11 16 16 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 17 C 0.07 1.99 5.49 -17.43 -0.10 1.89 16 18 N -0.87 -25.24 13.22 55.49 0.73 -24.51 16 19 Si 0.92 21.01 29.55 -169.99 -5.02 15.98 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 23 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.12 0.79 6.15 -51.93 -0.32 0.47 16 26 H 0.18 1.51 8.06 -52.48 -0.42 1.08 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.20 8.14 -51.91 -0.42 0.77 16 32 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 33 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 331.12 15.07 4.99 4.99 Total: -1.00 -31.72 331.12 -7.83 -39.55 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -3.67 Total: -3.17 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 0.25 Total: -8.95 kcal Atomic # 7 Polarization: -30.23 SS G_CDS: 0.87 Total: -29.36 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.64 Total: -11.71 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -3.03 SS G_CDS: -2.30 Total: -5.34 kcal Atomic # 35 Polarization: 0.32 SS G_CDS: -2.32 Total: -2.00 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.72 -7.83 -39.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805539192.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.052 kcal (2) G-P(sol) polarization free energy of solvation -31.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds