Wall clock time and date at job start Wed Apr 1 2020 05:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28442 * 125.18326 * 2 1 4 4 C 1.30918 * 110.93876 * 180.02562 * 3 2 1 5 5 Br 1.89097 * 126.07245 * 179.97438 * 4 3 2 6 6 C 1.39724 * 107.85713 * 359.73577 * 4 3 2 7 7 C 1.36642 * 125.18590 * 180.02562 * 2 1 3 8 8 C 1.47012 * 126.88845 * 359.97336 * 7 2 1 9 9 O 1.21549 * 120.00338 * 179.97438 * 8 7 2 10 10 O 1.34818 * 119.99687 * 359.97438 * 8 7 2 11 11 C 1.45206 * 116.99731 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47129 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.46965 * 180.02562 * 12 11 10 14 14 S 1.81003 * 109.46891 * 180.02562 * 13 12 11 15 15 C 1.76196 * 99.99843 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00530 * 0.02562 * 15 14 13 17 17 C 1.38809 * 119.99953 * 179.97438 * 15 14 13 18 18 N 1.31631 * 119.99789 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99828 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47488 * 59.99842 * 19 17 15 21 21 H 1.48502 * 109.47054 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46970 * 299.99459 * 19 17 15 23 23 H 1.08998 * 109.47202 * 269.95732 * 1 2 3 24 24 H 1.08995 * 109.47056 * 29.96605 * 1 2 3 25 25 H 1.08998 * 109.46596 * 149.96188 * 1 2 3 26 26 H 1.08005 * 127.33015 * 180.26410 * 6 4 3 27 27 H 1.09004 * 109.47122 * 299.99985 * 11 10 8 28 28 H 1.09000 * 109.47070 * 60.00010 * 11 10 8 29 29 H 1.09004 * 109.46930 * 299.99887 * 12 11 10 30 30 H 1.09004 * 109.47059 * 59.99488 * 12 11 10 31 31 H 1.09004 * 109.46976 * 299.99579 * 13 12 11 32 32 H 1.08992 * 109.47530 * 59.99431 * 13 12 11 33 33 H 0.96995 * 119.99998 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2051 1.0498 0.0000 4 6 3.4741 0.7276 -0.0005 5 35 4.9293 1.9351 -0.0015 6 6 3.5621 -0.6668 0.0052 7 6 2.2524 -1.1168 -0.0005 8 6 1.8000 -2.5155 -0.0006 9 8 2.6144 -3.4178 -0.0015 10 8 0.4816 -2.7975 0.0004 11 6 0.1076 -4.2005 0.0008 12 6 -1.4176 -4.3218 0.0013 13 6 -1.8117 -5.8001 0.0024 14 16 -3.6160 -5.9435 0.0022 15 6 -3.7835 -7.6975 0.0028 16 1 -2.9038 -8.3241 0.0035 17 6 -5.0461 -8.2742 0.0033 18 7 -6.1183 -7.5106 0.0039 19 14 -5.2236 -10.1337 0.0047 20 1 -4.5737 -10.6921 1.2174 21 1 -6.6644 -10.4934 0.0044 22 1 -4.5740 -10.6938 -1.2076 23 1 -0.3633 -0.0008 1.0276 24 1 -0.3633 0.8902 -0.5133 25 1 -0.3632 -0.8897 -0.5144 26 1 4.4605 -1.2663 0.0103 27 1 0.5099 -4.6841 -0.8894 28 1 0.5111 -4.6838 0.8906 29 1 -1.8203 -3.8381 0.8913 30 1 -1.8208 -3.8385 -0.8887 31 1 -1.4090 -6.2841 -0.8874 32 1 -1.4085 -6.2830 0.8925 33 1 -7.0007 -7.9135 0.0046 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805539192.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:49 Heat of formation + Delta-G solvation = -33.585237 kcal Electronic energy + Delta-G solvation = -18959.116154 eV Core-core repulsion = 15579.487398 eV Total energy + Delta-G solvation = -3379.628755 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.91891 -41.41759 -38.01567 -35.17140 -34.73153 -34.56355 -32.52535 -32.01685 -28.40782 -27.83471 -27.46656 -25.06316 -22.78089 -22.72535 -21.54979 -19.61200 -19.20580 -18.25129 -18.12827 -17.26821 -16.97642 -16.89109 -16.19579 -15.92652 -15.34410 -15.05247 -14.79169 -14.35983 -14.22257 -14.03711 -13.82834 -13.48896 -13.17001 -12.94007 -12.67015 -12.62007 -12.46303 -12.37311 -12.17305 -11.99714 -11.57517 -11.51043 -11.42898 -11.13612 -10.59504 -10.35455 -10.09828 -8.66623 -8.37952 -6.13639 -0.30337 0.07713 0.94448 1.02816 1.32803 1.41139 1.46533 1.51623 1.59286 1.79692 2.27500 2.96812 3.15081 3.28937 3.37584 3.86054 3.90573 3.96377 4.10789 4.15779 4.30065 4.31675 4.33902 4.49539 4.69121 4.70566 4.88507 4.98950 5.03097 5.26066 5.28734 5.40384 6.17764 6.29418 6.53083 7.05012 8.70829 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.052044 B = 0.001640 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.879117 B =17067.985593 C =17574.812736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.243 5.243 3 N -0.242 5.242 4 C -0.001 4.001 5 Br 0.054 6.946 6 C -0.117 4.117 7 C -0.032 4.032 8 C 0.549 3.451 9 O -0.510 6.510 10 O -0.346 6.346 11 C 0.081 3.919 12 C -0.085 4.085 13 C -0.094 4.094 14 S -0.182 6.182 15 C -0.541 4.541 16 H 0.074 0.926 17 C 0.016 3.984 18 N -0.906 5.906 19 Si 0.991 3.009 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.265 1.265 23 H 0.109 0.891 24 H 0.121 0.879 25 H 0.116 0.884 26 H 0.190 0.810 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.224 20.161 -0.050 29.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.035 5.035 3 N -0.081 5.081 4 C -0.233 4.233 5 Br 0.135 6.865 6 C -0.146 4.146 7 C -0.158 4.158 8 C 0.392 3.608 9 O -0.397 6.397 10 O -0.262 6.262 11 C 0.006 3.994 12 C -0.124 4.124 13 C -0.243 4.243 14 S 0.047 5.953 15 C -0.689 4.689 16 H 0.092 0.908 17 C -0.189 4.189 18 N -0.542 5.542 19 Si 0.813 3.187 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.190 1.190 23 H 0.127 0.873 24 H 0.139 0.861 25 H 0.135 0.865 26 H 0.208 0.792 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 20.051 21.960 -0.050 29.738 hybrid contribution 0.739 -3.040 0.023 3.128 sum 20.790 18.921 -0.027 28.111 Atomic orbital electron populations 1.22898 0.69336 1.07682 1.07002 1.46277 1.09335 1.01082 1.46811 1.73260 1.02915 1.14141 1.17780 1.23634 0.92391 0.93713 1.13559 1.96772 1.33057 1.58626 1.98007 1.22285 0.96522 0.92789 1.03034 1.20640 0.91761 0.86252 1.17099 1.19539 0.81324 0.87065 0.72898 1.90919 1.55309 1.47009 1.46442 1.86512 1.24199 1.31830 1.83656 1.23201 0.95670 0.76875 1.03667 1.21121 0.92173 0.94196 1.04889 1.23079 0.98345 0.99127 1.03735 1.84574 1.02956 1.10723 1.97062 1.23032 0.95601 0.91318 1.58969 0.90781 1.26030 0.94447 1.04604 0.93801 1.70127 0.98557 1.37657 1.47846 0.85101 0.77595 0.76648 0.79319 1.19002 1.20086 1.19006 0.87267 0.86096 0.86531 0.79242 0.90218 0.90239 0.89783 0.89751 0.91322 0.91331 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.80 10.81 127.77 1.38 2.18 16 2 N -0.24 -4.48 3.75 -356.07 -1.34 -5.82 16 3 N -0.24 -4.96 11.90 -53.07 -0.63 -5.59 16 4 C 0.00 -0.01 7.71 85.19 0.66 0.64 16 5 Br 0.05 0.83 34.11 -20.37 -0.69 0.14 16 6 C -0.12 -2.24 10.83 22.69 0.25 -2.00 16 7 C -0.03 -0.66 6.96 40.75 0.28 -0.38 16 8 C 0.55 12.61 7.93 70.12 0.56 13.17 16 9 O -0.51 -14.17 16.71 19.68 0.33 -13.84 16 10 O -0.35 -7.31 7.68 -57.30 -0.44 -7.75 16 11 C 0.08 1.84 5.48 71.98 0.39 2.24 16 12 C -0.09 -2.28 5.60 30.59 0.17 -2.11 16 13 C -0.09 -3.38 5.67 71.98 0.41 -2.97 16 14 S -0.18 -9.07 21.44 -56.49 -1.21 -10.28 16 15 C -0.54 -30.10 9.50 67.96 0.65 -29.45 16 16 H 0.07 3.95 7.80 -2.91 -0.02 3.93 16 17 C 0.02 0.91 5.49 84.86 0.47 1.38 16 18 N -0.91 -53.10 13.22 21.65 0.29 -52.81 16 19 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 20 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 21 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 23 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.12 1.37 6.15 -2.39 -0.01 1.36 16 26 H 0.19 3.00 8.06 -2.91 -0.02 2.98 16 27 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.07 2.43 8.14 -2.40 -0.02 2.41 16 33 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -67.48 331.12 4.67 -62.80 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: 1.13 Total: 5.66 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 5.21 Total: -17.30 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: -1.68 Total: -64.22 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.11 Total: -21.59 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -1.21 Total: -10.28 kcal Atomic # 35 Polarization: 0.83 SS G_CDS: -0.69 Total: 0.14 kcal Total: -67.48 4.67 -62.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805539192.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.219 kcal (2) G-P(sol) polarization free energy of solvation -67.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds