Wall clock time and date at job start Wed Apr 1 2020 05:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99656 * 2 1 4 4 H 1.48497 * 109.46999 * 269.99737 * 3 2 1 5 5 H 1.48498 * 109.47350 * 30.00381 * 3 2 1 6 6 H 1.48505 * 109.46706 * 150.00307 * 3 2 1 7 7 C 1.37876 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99893 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00285 * 0.02562 * 7 2 1 10 10 S 1.81397 * 109.47317 * 179.97438 * 9 7 2 11 11 O 1.42105 * 110.54275 * 68.37192 * 10 9 7 12 12 O 1.42101 * 110.54298 * 291.62295 * 10 9 7 13 13 N 1.65599 * 104.44825 * 179.97438 * 10 9 7 14 14 C 1.34774 * 120.00089 * 65.00200 * 13 10 9 15 15 O 1.21555 * 119.99597 * 359.97438 * 14 13 10 16 16 C 1.47838 * 120.00356 * 179.97438 * 14 13 10 17 17 C 1.39566 * 120.55266 * 359.72455 * 16 14 13 18 18 N 1.31669 * 120.58466 * 179.68012 * 17 16 14 19 19 C 1.31945 * 121.89270 * 0.63146 * 18 17 16 20 20 C 1.38401 * 121.06565 * 359.65786 * 19 18 17 21 21 Br 1.89094 * 120.35678 * 180.02562 * 20 19 18 22 22 C 1.38487 * 119.28232 * 0.02562 * 20 19 18 23 23 H 0.97001 * 120.00225 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47172 * 59.99598 * 9 7 2 25 25 H 1.09000 * 109.46699 * 299.99500 * 9 7 2 26 26 H 0.96999 * 120.00046 * 244.99555 * 13 10 9 27 27 H 1.07997 * 119.70688 * 359.97438 * 17 16 14 28 28 H 1.07992 * 119.46891 * 179.67794 * 19 18 17 29 29 H 1.08006 * 120.85491 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 16 2.4299 -3.8779 -0.0029 11 8 3.1267 -3.9393 1.2340 12 8 3.1266 -3.9372 -1.2400 13 7 1.4795 -5.2341 -0.0034 14 6 0.6885 -5.5022 -1.0612 15 8 0.6723 -4.7484 -2.0145 16 6 -0.1596 -6.7132 -1.0619 17 6 -0.1458 -7.5897 0.0241 18 7 -0.9055 -8.6651 0.0269 19 6 -1.6934 -8.9645 -0.9882 20 6 -1.7601 -8.1498 -2.1051 21 35 -2.8970 -8.5978 -3.5482 22 6 -0.9853 -7.0031 -2.1542 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8920 25 1 0.6242 -2.5575 0.8881 26 1 1.4922 -5.8355 0.7575 27 1 0.4901 -7.3814 0.8719 28 1 -2.2963 -9.8595 -0.9468 29 1 -1.0178 -6.3490 -3.0131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821584099.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:22 Heat of formation + Delta-G solvation = -70.578090 kcal Electronic energy + Delta-G solvation = -19759.974242 eV Core-core repulsion = 16242.908262 eV Total energy + Delta-G solvation = -3517.065980 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.961 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.07622 -39.36389 -36.35328 -35.29036 -34.57520 -33.57553 -33.40389 -32.44288 -29.97582 -29.12462 -25.47317 -23.87503 -23.59660 -21.71362 -19.54028 -18.55762 -17.46825 -17.37564 -16.80736 -16.32299 -15.84767 -15.40725 -15.16725 -14.76642 -14.37024 -14.26348 -14.14901 -13.67065 -12.84281 -12.59909 -12.27089 -12.04925 -11.80283 -11.52376 -11.39531 -11.30285 -10.95216 -10.90561 -10.78756 -10.65433 -10.60808 -10.25939 -9.96369 -9.85418 -9.44934 -9.26047 -8.75203 -6.37692 -4.49371 0.02908 0.50839 0.87944 1.04331 2.30912 2.95661 3.19847 3.25270 3.25864 3.30357 3.71455 4.05397 4.19318 4.20861 4.32196 4.45183 4.55824 4.72288 4.92816 5.00561 5.09523 5.34448 5.45651 5.82399 6.47310 6.66015 6.80822 7.20476 7.35859 7.46552 7.68617 8.51657 9.18524 10.73979 Molecular weight = 347.96amu Principal moments of inertia in cm(-1) A = 0.019394 B = 0.002905 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.399557 B = 9637.806100 C =10509.354921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.078 3.922 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.536 4.536 8 H 0.072 0.928 9 C -0.402 4.402 10 S 2.552 3.448 11 O -0.963 6.963 12 O -0.948 6.948 13 N -1.055 6.055 14 C 0.585 3.415 15 O -0.473 6.473 16 C -0.181 4.181 17 C 0.154 3.846 18 N -0.475 5.475 19 C 0.157 3.843 20 C -0.157 4.157 21 Br -0.022 7.022 22 C 0.017 3.983 23 H 0.270 0.730 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.423 0.577 27 H 0.172 0.828 28 H 0.172 0.828 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.305 -19.886 -3.075 21.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.129 4.129 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.575 4.575 8 H 0.090 0.910 9 C -0.539 4.539 10 S 2.654 3.346 11 O -0.954 6.954 12 O -0.939 6.939 13 N -0.814 5.814 14 C 0.370 3.630 15 O -0.344 6.344 16 C -0.188 4.188 17 C -0.004 4.004 18 N -0.183 5.183 19 C -0.001 4.001 20 C -0.239 4.239 21 Br 0.063 6.937 22 C -0.011 4.011 23 H 0.079 0.921 24 H 0.117 0.883 25 H 0.105 0.895 26 H 0.258 0.742 27 H 0.189 0.811 28 H 0.189 0.811 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.914 -20.024 -3.607 21.832 hybrid contribution -0.060 1.302 0.058 1.305 sum -7.974 -18.722 -3.549 20.657 Atomic orbital electron populations 1.69949 1.06280 1.27851 1.47141 1.24923 0.95048 0.99617 0.93322 0.86324 0.79947 0.81562 0.78845 1.19809 1.20571 1.19032 1.20275 0.92774 0.88355 1.56145 0.91042 1.27600 1.09780 1.09000 1.07509 1.07296 0.77280 0.75819 0.74186 1.93535 1.70926 1.85767 1.45174 1.93540 1.70645 1.85046 1.44642 1.55526 1.55787 1.44101 1.26020 1.17722 0.78464 0.85002 0.81788 1.91020 1.63324 1.47687 1.32363 1.21022 1.01917 0.98420 0.97489 1.23250 0.93225 0.87919 0.96030 1.67910 1.06148 1.17805 1.26453 1.23130 0.93132 0.97343 0.86529 1.22945 1.03032 1.00329 0.97582 1.96808 1.62351 1.93021 1.41531 1.21834 0.88498 0.93209 0.97551 0.92083 0.88334 0.89532 0.74188 0.81147 0.81070 0.81874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.63 13.29 55.43 0.74 -23.89 15 2 C 0.08 2.13 5.46 -17.82 -0.10 2.03 15 3 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 15 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 7 C -0.54 -14.65 9.13 -34.44 -0.31 -14.96 15 8 H 0.07 1.90 7.71 -52.49 -0.40 1.50 15 9 C -0.40 -9.62 5.64 36.01 0.20 -9.42 15 10 S 2.55 52.49 5.03 -107.50 -0.54 51.95 15 11 O -0.96 -20.90 18.08 -57.54 -1.04 -21.94 15 12 O -0.95 -22.59 17.04 -64.78 -1.10 -23.70 15 13 N -1.06 -15.68 5.56 30.53 0.17 -15.51 15 14 C 0.59 9.08 7.52 -12.33 -0.09 8.99 15 15 O -0.47 -9.20 14.52 -11.79 -0.17 -9.37 15 16 C -0.18 -2.15 5.89 -104.83 -0.62 -2.77 15 17 C 0.15 1.51 10.71 -17.13 -0.18 1.32 15 18 N -0.47 -4.67 10.34 -12.89 -0.13 -4.80 15 19 C 0.16 1.34 10.93 -17.44 -0.19 1.15 15 20 C -0.16 -1.47 6.24 -39.43 -0.25 -1.72 15 21 Br -0.02 -0.18 33.73 -68.01 -2.29 -2.47 15 22 C 0.02 0.19 9.48 -38.84 -0.37 -0.18 15 23 H 0.27 7.06 8.31 -40.82 -0.34 6.72 15 24 H 0.10 2.46 7.19 -51.92 -0.37 2.09 15 25 H 0.09 1.99 8.14 -51.92 -0.42 1.57 15 26 H 0.42 4.33 6.85 -34.47 -0.24 4.09 15 27 H 0.17 1.15 6.42 -52.49 -0.34 0.82 15 28 H 0.17 0.99 8.06 -52.49 -0.42 0.56 15 29 H 0.16 1.82 7.74 -52.48 -0.41 1.41 15 LS Contribution 299.86 15.07 4.52 4.52 Total: -1.00 -34.86 299.86 -8.52 -43.38 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -1.74 Total: 1.60 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -1.91 Total: -15.55 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.77 Total: -44.21 kcal Atomic # 8 Polarization: -52.69 SS G_CDS: -2.32 Total: -55.01 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 52.49 SS G_CDS: -0.54 Total: 51.95 kcal Atomic # 35 Polarization: -0.18 SS G_CDS: -2.29 Total: -2.47 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.86 -8.52 -43.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821584099.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.195 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds