Wall clock time and date at job start Wed Apr 1 2020 05:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99656 * 2 1 4 4 H 1.48497 * 109.46999 * 269.99737 * 3 2 1 5 5 H 1.48498 * 109.47350 * 30.00381 * 3 2 1 6 6 H 1.48505 * 109.46706 * 150.00307 * 3 2 1 7 7 C 1.37876 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99893 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00285 * 0.02562 * 7 2 1 10 10 S 1.81397 * 109.47317 * 179.97438 * 9 7 2 11 11 O 1.42105 * 110.54275 * 68.37192 * 10 9 7 12 12 O 1.42101 * 110.54298 * 291.62295 * 10 9 7 13 13 N 1.65599 * 104.44825 * 179.97438 * 10 9 7 14 14 C 1.34774 * 120.00089 * 65.00200 * 13 10 9 15 15 O 1.21555 * 119.99597 * 359.97438 * 14 13 10 16 16 C 1.47838 * 120.00356 * 179.97438 * 14 13 10 17 17 C 1.39566 * 120.55266 * 359.72455 * 16 14 13 18 18 N 1.31669 * 120.58466 * 179.68012 * 17 16 14 19 19 C 1.31945 * 121.89270 * 0.63146 * 18 17 16 20 20 C 1.38401 * 121.06565 * 359.65786 * 19 18 17 21 21 Br 1.89094 * 120.35678 * 180.02562 * 20 19 18 22 22 C 1.38487 * 119.28232 * 0.02562 * 20 19 18 23 23 H 0.97001 * 120.00225 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47172 * 59.99598 * 9 7 2 25 25 H 1.09000 * 109.46699 * 299.99500 * 9 7 2 26 26 H 0.96999 * 120.00046 * 244.99555 * 13 10 9 27 27 H 1.07997 * 119.70688 * 359.97438 * 17 16 14 28 28 H 1.07992 * 119.46891 * 179.67794 * 19 18 17 29 29 H 1.08006 * 120.85491 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 16 2.4299 -3.8779 -0.0029 11 8 3.1267 -3.9393 1.2340 12 8 3.1266 -3.9372 -1.2400 13 7 1.4795 -5.2341 -0.0034 14 6 0.6885 -5.5022 -1.0612 15 8 0.6723 -4.7484 -2.0145 16 6 -0.1596 -6.7132 -1.0619 17 6 -0.1458 -7.5897 0.0241 18 7 -0.9055 -8.6651 0.0269 19 6 -1.6934 -8.9645 -0.9882 20 6 -1.7601 -8.1498 -2.1051 21 35 -2.8970 -8.5978 -3.5482 22 6 -0.9853 -7.0031 -2.1542 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8920 25 1 0.6242 -2.5575 0.8881 26 1 1.4922 -5.8355 0.7575 27 1 0.4901 -7.3814 0.8719 28 1 -2.2963 -9.8595 -0.9468 29 1 -1.0178 -6.3490 -3.0131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821584099.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:22 Heat of formation + Delta-G solvation = -97.413910 kcal Electronic energy + Delta-G solvation = -19761.137930 eV Core-core repulsion = 16242.908262 eV Total energy + Delta-G solvation = -3518.229669 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.961 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.06119 -40.49718 -38.13145 -37.08981 -35.92435 -35.43360 -34.37688 -33.32168 -31.11223 -30.72108 -26.48835 -25.58998 -24.67046 -22.88113 -21.00059 -19.77914 -19.15585 -18.50492 -18.13298 -17.62318 -17.37061 -16.73499 -16.54537 -16.30460 -16.09034 -15.20020 -15.18496 -14.53387 -14.47813 -14.14068 -13.72002 -13.61023 -13.49140 -13.22744 -13.12417 -12.75454 -12.56534 -12.52063 -12.18170 -11.93687 -11.78562 -11.59901 -11.15690 -11.10029 -10.81176 -10.78607 -10.18712 -8.43356 -6.62279 -0.85760 -0.77646 -0.30440 0.30316 1.17807 1.37772 1.39936 1.49933 1.52004 2.29257 2.39669 2.67452 2.82982 2.91276 3.20558 3.31795 3.43523 3.51572 3.71614 3.78842 4.02960 4.57259 4.62314 4.65733 4.74086 5.07162 5.28817 5.56231 5.68516 6.23366 6.45522 6.47766 7.09657 8.69423 Molecular weight = 347.96amu Principal moments of inertia in cm(-1) A = 0.019394 B = 0.002905 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.399557 B = 9637.806100 C =10509.354921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.567 4.567 8 H 0.070 0.930 9 C -0.421 4.421 10 S 2.601 3.399 11 O -0.971 6.971 12 O -0.980 6.980 13 N -1.037 6.037 14 C 0.587 3.413 15 O -0.519 6.519 16 C -0.196 4.196 17 C 0.166 3.834 18 N -0.483 5.483 19 C 0.171 3.829 20 C -0.160 4.160 21 Br -0.010 7.010 22 C 0.010 3.990 23 H 0.274 0.726 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.446 0.554 27 H 0.200 0.800 28 H 0.204 0.796 29 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.509 -21.408 -2.281 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.178 4.178 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.606 4.606 8 H 0.088 0.912 9 C -0.556 4.556 10 S 2.702 3.298 11 O -0.962 6.962 12 O -0.970 6.970 13 N -0.802 5.802 14 C 0.375 3.625 15 O -0.393 6.393 16 C -0.204 4.204 17 C 0.008 3.992 18 N -0.191 5.191 19 C 0.013 3.987 20 C -0.242 4.242 21 Br 0.075 6.925 22 C -0.018 4.018 23 H 0.083 0.917 24 H 0.098 0.902 25 H 0.107 0.893 26 H 0.286 0.714 27 H 0.217 0.783 28 H 0.220 0.780 29 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.125 -21.556 -2.779 23.203 hybrid contribution -0.099 1.598 -0.211 1.615 sum -8.224 -19.957 -2.990 21.792 Atomic orbital electron populations 1.70032 1.07608 1.28962 1.47821 1.25861 0.95983 1.03228 0.92765 0.85420 0.79059 0.77486 0.79192 1.19273 1.19244 1.18200 1.20726 0.93187 0.90300 1.56377 0.91220 1.27672 1.10728 1.10575 1.06665 1.05479 0.75994 0.75304 0.73060 1.93517 1.71074 1.86147 1.45427 1.93499 1.71441 1.85737 1.46356 1.54896 1.55182 1.42960 1.27205 1.18257 0.77979 0.85522 0.80731 1.91003 1.64733 1.49474 1.34042 1.20703 1.02775 0.97728 0.99215 1.23657 0.92802 0.86990 0.95778 1.68055 1.06564 1.17638 1.26821 1.23680 0.92019 0.97543 0.85415 1.23000 1.02971 0.99806 0.98402 1.96829 1.61784 1.92774 1.41147 1.21881 0.88809 0.93867 0.97252 0.91668 0.90188 0.89273 0.71354 0.78334 0.77973 0.82704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.91 13.29 21.45 0.28 -51.62 15 2 C 0.03 1.39 5.46 84.65 0.46 1.85 15 3 Si 0.97 42.61 29.54 68.60 2.03 44.64 15 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 15 6 H -0.26 -10.95 7.11 99.48 0.71 -10.24 15 7 C -0.57 -31.62 9.13 25.60 0.23 -31.39 15 8 H 0.07 3.78 7.71 -2.91 -0.02 3.75 15 9 C -0.42 -20.77 5.64 71.24 0.40 -20.37 15 10 S 2.60 107.17 5.03 -56.49 -0.28 106.88 15 11 O -0.97 -41.26 18.08 -127.65 -2.31 -43.56 15 12 O -0.98 -47.18 17.04 -120.73 -2.06 -49.24 15 13 N -1.04 -29.98 5.56 -175.61 -0.98 -30.96 15 14 C 0.59 18.17 7.52 86.78 0.65 18.83 15 15 O -0.52 -20.84 14.52 12.47 0.18 -20.66 15 16 C -0.20 -4.47 5.89 -20.00 -0.12 -4.58 15 17 C 0.17 2.82 10.71 85.04 0.91 3.73 15 18 N -0.48 -8.02 10.34 -194.69 -2.01 -10.04 15 19 C 0.17 2.43 10.93 84.71 0.93 3.36 15 20 C -0.16 -2.71 6.24 22.37 0.14 -2.57 15 21 Br -0.01 -0.15 33.73 -20.37 -0.69 -0.84 15 22 C 0.01 0.21 9.48 22.75 0.22 0.43 15 23 H 0.27 14.54 8.31 -92.71 -0.77 13.77 15 24 H 0.08 4.20 7.19 -2.39 -0.02 4.18 15 25 H 0.09 4.22 8.14 -2.39 -0.02 4.20 15 26 H 0.45 8.19 6.85 -96.75 -0.66 7.53 15 27 H 0.20 2.01 6.42 -2.91 -0.02 2.00 15 28 H 0.20 1.54 8.06 -2.91 -0.02 1.51 15 29 H 0.16 3.55 7.74 -2.91 -0.02 3.53 15 Total: -1.00 -75.68 299.86 -1.45 -77.13 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 0.56 Total: 8.98 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: 3.82 Total: -30.71 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -2.71 Total: -92.62 kcal Atomic # 8 Polarization: -109.28 SS G_CDS: -4.18 Total: -113.46 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: 107.17 SS G_CDS: -0.28 Total: 106.88 kcal Atomic # 35 Polarization: -0.15 SS G_CDS: -0.69 Total: -0.84 kcal Total: -75.68 -1.45 -77.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821584099.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.287 kcal (2) G-P(sol) polarization free energy of solvation -75.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds