Wall clock time and date at job start Wed Apr 1 2020 05:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47483 * 2 1 4 4 C 1.50702 * 109.47141 * 119.99845 * 2 1 3 5 5 H 1.08003 * 119.99864 * 119.99977 * 4 2 1 6 6 C 1.37876 * 119.99938 * 300.00144 * 4 2 1 7 7 N 1.31512 * 120.00200 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00049 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46965 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47336 * 119.99492 * 8 6 4 11 11 H 1.48497 * 109.46968 * 240.00100 * 8 6 4 12 12 N 1.46504 * 109.47167 * 239.99908 * 2 1 3 13 13 C 1.46496 * 119.99544 * 300.00002 * 12 2 1 14 14 S 1.65595 * 120.00049 * 120.00059 * 12 2 1 15 15 O 1.42096 * 106.40127 * 157.13405 * 14 12 2 16 16 O 1.42103 * 106.40488 * 24.21286 * 14 12 2 17 17 C 1.76199 * 107.21688 * 270.67411 * 14 12 2 18 18 C 1.38674 * 120.45607 * 347.21972 * 17 14 12 19 19 C 1.38523 * 118.50269 * 179.80191 * 18 17 14 20 20 C 1.38792 * 119.34796 * 0.45543 * 19 18 17 21 21 Cl 1.73600 * 119.55880 * 179.76691 * 20 19 18 22 22 N 1.31570 * 120.87507 * 359.79006 * 20 19 18 23 23 C 1.32809 * 121.62059 * 359.97311 * 22 20 19 24 24 C 1.48056 * 119.71953 * 180.02562 * 23 22 20 25 25 O 1.21434 * 120.00472 * 185.70048 * 24 23 22 26 26 O 1.34681 * 119.99672 * 5.70135 * 24 23 22 27 27 H 1.09002 * 109.47054 * 59.99908 * 1 2 3 28 28 H 1.08993 * 109.47472 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47075 * 300.00291 * 1 2 3 30 30 H 0.96999 * 120.00403 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.47286 * 274.44092 * 13 12 2 32 32 H 1.08998 * 109.47724 * 34.44779 * 13 12 2 33 33 H 1.09007 * 109.46627 * 154.44705 * 13 12 2 34 34 H 1.07994 * 120.74573 * 0.02562 * 18 17 14 35 35 H 1.08004 * 120.31659 * 180.21662 * 19 18 17 36 36 H 0.96705 * 116.99847 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.1474 -2.2862 3.6038 10 1 3.1473 -0.1856 4.8161 11 1 1.1678 -1.5865 4.8165 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 3.7001 -0.8799 -2.9923 16 8 3.5917 1.1733 -1.5712 17 6 1.8951 0.8697 -3.4599 18 6 0.5554 0.5157 -3.5157 19 6 -0.2544 1.1383 -4.4513 20 6 0.2958 2.0838 -5.3055 21 17 -0.7127 2.8630 -6.4842 22 7 1.5717 2.3970 -5.2340 23 6 2.3802 1.8265 -4.3481 24 6 3.8092 2.2112 -4.3042 25 8 4.5746 1.6209 -3.5691 26 8 4.2602 3.2158 -5.0795 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.7095 1.1619 3.4844 31 1 2.3714 -2.7375 -0.9053 32 1 0.6576 -2.2804 -1.0545 33 1 1.7008 -2.3053 -2.4965 34 1 0.1519 -0.2260 -2.8424 35 1 -1.3028 0.8875 -4.5179 36 1 5.2009 3.4310 -5.0160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833516422.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:05 Heat of formation + Delta-G solvation = -109.068277 kcal Electronic energy + Delta-G solvation = -27269.323851 eV Core-core repulsion = 23100.849591 eV Total energy + Delta-G solvation = -4168.474260 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.20205 -39.80973 -37.14584 -36.65238 -36.58423 -36.28858 -35.13113 -33.35622 -32.63614 -31.96191 -29.22490 -26.15864 -25.72871 -25.20489 -24.41636 -22.37693 -20.80640 -18.99947 -18.72278 -18.00933 -17.48898 -17.31206 -16.61395 -16.21947 -16.13126 -15.89045 -15.35799 -14.75783 -14.49059 -14.25443 -13.89334 -13.60702 -13.50536 -13.17580 -12.89965 -12.31795 -12.11866 -11.90941 -11.81299 -11.72222 -11.48242 -11.45120 -11.42496 -11.22663 -11.03239 -10.91230 -10.84743 -10.63142 -10.47253 -10.37675 -10.18036 -10.03795 -9.72512 -9.35296 -8.51833 -8.13976 -6.13133 -4.19708 -0.26995 0.40447 0.76064 1.22743 1.97644 2.39300 3.05717 3.25631 3.34406 3.37579 3.43894 3.81237 4.04755 4.31834 4.35871 4.46654 4.58656 4.87750 5.11854 5.15960 5.19239 5.28127 5.46275 5.71659 5.98931 6.11231 6.24737 6.48290 6.58454 6.65179 6.83418 6.85873 7.28842 7.50731 7.54809 7.69588 7.95260 8.18078 8.82923 9.46635 10.92875 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.014989 B = 0.004000 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.577707 B = 6998.738028 C = 7862.431828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.262 3.738 3 H 0.063 0.937 4 C -0.518 4.518 5 H 0.066 0.934 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.984 5.984 13 C 0.098 3.902 14 S 2.694 3.306 15 O -0.954 6.954 16 O -0.922 6.922 17 C -0.663 4.663 18 C 0.021 3.979 19 C -0.137 4.137 20 C 0.205 3.795 21 Cl -0.011 7.011 22 N -0.439 5.439 23 C 0.204 3.796 24 C 0.530 3.470 25 O -0.468 6.468 26 O -0.482 6.482 27 H 0.009 0.991 28 H 0.038 0.962 29 H 0.097 0.903 30 H 0.263 0.737 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.174 0.826 35 H 0.165 0.835 36 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.495 1.076 -15.845 16.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.160 3.840 3 H 0.080 0.920 4 C -0.558 4.558 5 H 0.084 0.916 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.827 5.827 13 C -0.048 4.048 14 S 2.775 3.225 15 O -0.943 6.943 16 O -0.912 6.912 17 C -0.744 4.744 18 C -0.005 4.005 19 C -0.158 4.158 20 C 0.038 3.962 21 Cl 0.018 6.982 22 N -0.153 5.153 23 C 0.064 3.936 24 C 0.370 3.630 25 O -0.354 6.354 26 O -0.292 6.292 27 H 0.028 0.972 28 H 0.058 0.942 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.191 0.809 35 H 0.183 0.817 36 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -3.638 1.736 -16.290 16.781 hybrid contribution -0.354 -0.436 0.940 1.095 sum -3.992 1.300 -15.350 15.914 Atomic orbital electron populations 1.22221 0.98239 1.00018 1.00853 1.18879 0.91302 0.93360 0.80462 0.91972 1.21318 1.31683 1.13094 0.89683 0.91602 1.24902 0.94900 0.94975 0.99050 1.69851 1.36569 1.22652 1.23831 0.86423 0.78626 0.79708 0.82578 1.19623 1.20853 1.20989 1.57733 1.70738 1.19634 1.34607 1.21334 1.02271 0.81840 0.99361 1.02702 0.73195 0.73943 0.72658 1.93529 1.67232 1.58999 1.74568 1.93601 1.70681 1.56353 1.70559 1.33015 1.12930 1.10286 1.18133 1.21578 0.90029 0.95051 0.93860 1.22286 1.02777 0.95859 0.94925 1.21892 0.89540 0.92801 0.91935 1.98439 1.64099 1.79911 1.55728 1.66990 1.03663 1.24264 1.20373 1.19200 0.90918 0.92046 0.91391 1.20299 0.87086 0.78333 0.77304 1.91027 1.56028 1.51969 1.36357 1.84594 1.34270 1.49381 1.60990 0.97237 0.94249 0.88433 0.92659 0.92217 0.90729 0.92672 0.80878 0.81711 0.71905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.89 37.16 0.33 -2.80 16 2 C 0.26 6.05 2.62 -69.08 -0.18 5.87 16 3 H 0.06 1.61 6.93 -51.93 -0.36 1.25 16 4 C -0.52 -13.35 8.37 -34.44 -0.29 -13.64 16 5 H 0.07 1.69 7.52 -52.48 -0.39 1.30 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -23.92 11.32 55.43 0.63 -23.29 16 8 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.98 -19.31 2.18 -115.85 -0.25 -19.56 16 13 C 0.10 1.56 9.23 59.84 0.55 2.11 16 14 S 2.69 54.76 3.96 -107.50 -0.43 54.33 16 15 O -0.95 -20.37 16.44 -64.46 -1.06 -21.43 16 16 O -0.92 -22.07 14.16 -67.07 -0.95 -23.02 16 17 C -0.66 -11.04 5.88 -39.03 -0.23 -11.27 16 18 C 0.02 0.27 9.41 -39.32 -0.37 -0.10 16 19 C -0.14 -1.48 9.88 -39.27 -0.39 -1.86 16 20 C 0.20 2.55 7.27 -17.46 -0.13 2.42 16 21 Cl -0.01 -0.11 29.11 -51.86 -1.51 -1.61 16 22 N -0.44 -6.57 10.10 -6.95 -0.07 -6.64 16 23 C 0.20 3.38 6.75 -83.03 -0.56 2.82 16 24 C 0.53 8.75 8.18 34.76 0.28 9.03 16 25 O -0.47 -9.14 12.58 -29.55 -0.37 -9.51 16 26 O -0.48 -5.87 13.25 -40.44 -0.54 -6.41 16 27 H 0.01 0.15 7.01 -51.93 -0.36 -0.21 16 28 H 0.04 0.73 6.69 -51.93 -0.35 0.38 16 29 H 0.10 2.27 6.07 -51.93 -0.32 1.96 16 30 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.06 0.98 8.00 -51.93 -0.42 0.57 16 32 H 0.07 1.06 6.45 -51.93 -0.33 0.73 16 33 H 0.05 0.72 7.61 -51.93 -0.40 0.32 16 34 H 0.17 1.90 6.16 -52.49 -0.32 1.58 16 35 H 0.17 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.42 2.78 9.11 45.56 0.42 3.20 16 LS Contribution 333.65 15.07 5.03 5.03 Total: -1.00 -34.12 333.65 -8.00 -42.12 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -2.39 Total: 0.32 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -1.07 Total: -5.84 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 0.30 Total: -49.49 kcal Atomic # 8 Polarization: -57.45 SS G_CDS: -2.92 Total: -60.37 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 54.76 SS G_CDS: -0.43 Total: 54.33 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.51 Total: -1.61 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.12 -8.00 -42.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833516422.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.948 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds