Wall clock time and date at job start Wed Apr 1 2020 05:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47483 * 2 1 4 4 C 1.50702 * 109.47141 * 119.99845 * 2 1 3 5 5 H 1.08003 * 119.99864 * 119.99977 * 4 2 1 6 6 C 1.37876 * 119.99938 * 300.00144 * 4 2 1 7 7 N 1.31512 * 120.00200 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00049 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46965 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47336 * 119.99492 * 8 6 4 11 11 H 1.48497 * 109.46968 * 240.00100 * 8 6 4 12 12 N 1.46504 * 109.47167 * 239.99908 * 2 1 3 13 13 C 1.46496 * 119.99544 * 300.00002 * 12 2 1 14 14 S 1.65595 * 120.00049 * 120.00059 * 12 2 1 15 15 O 1.42096 * 106.40127 * 157.13405 * 14 12 2 16 16 O 1.42103 * 106.40488 * 24.21286 * 14 12 2 17 17 C 1.76199 * 107.21688 * 270.67411 * 14 12 2 18 18 C 1.38674 * 120.45607 * 347.21972 * 17 14 12 19 19 C 1.38523 * 118.50269 * 179.80191 * 18 17 14 20 20 C 1.38792 * 119.34796 * 0.45543 * 19 18 17 21 21 Cl 1.73600 * 119.55880 * 179.76691 * 20 19 18 22 22 N 1.31570 * 120.87507 * 359.79006 * 20 19 18 23 23 C 1.32809 * 121.62059 * 359.97311 * 22 20 19 24 24 C 1.48056 * 119.71953 * 180.02562 * 23 22 20 25 25 O 1.21434 * 120.00472 * 185.70048 * 24 23 22 26 26 O 1.34681 * 119.99672 * 5.70135 * 24 23 22 27 27 H 1.09002 * 109.47054 * 59.99908 * 1 2 3 28 28 H 1.08993 * 109.47472 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47075 * 300.00291 * 1 2 3 30 30 H 0.96999 * 120.00403 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.47286 * 274.44092 * 13 12 2 32 32 H 1.08998 * 109.47724 * 34.44779 * 13 12 2 33 33 H 1.09007 * 109.46627 * 154.44705 * 13 12 2 34 34 H 1.07994 * 120.74573 * 0.02562 * 18 17 14 35 35 H 1.08004 * 120.31659 * 180.21662 * 19 18 17 36 36 H 0.96705 * 116.99847 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.1474 -2.2862 3.6038 10 1 3.1473 -0.1856 4.8161 11 1 1.1678 -1.5865 4.8165 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 3.7001 -0.8799 -2.9923 16 8 3.5917 1.1733 -1.5712 17 6 1.8951 0.8697 -3.4599 18 6 0.5554 0.5157 -3.5157 19 6 -0.2544 1.1383 -4.4513 20 6 0.2958 2.0838 -5.3055 21 17 -0.7127 2.8630 -6.4842 22 7 1.5717 2.3970 -5.2340 23 6 2.3802 1.8265 -4.3481 24 6 3.8092 2.2112 -4.3042 25 8 4.5746 1.6209 -3.5691 26 8 4.2602 3.2158 -5.0795 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.7095 1.1619 3.4844 31 1 2.3714 -2.7375 -0.9053 32 1 0.6576 -2.2804 -1.0545 33 1 1.7008 -2.3053 -2.4965 34 1 0.1519 -0.2260 -2.8424 35 1 -1.3028 0.8875 -4.5179 36 1 5.2009 3.4310 -5.0160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833516422.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:04 Heat of formation + Delta-G solvation = -134.839178 kcal Electronic energy + Delta-G solvation = -27270.441361 eV Core-core repulsion = 23100.849591 eV Total energy + Delta-G solvation = -4169.591770 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.33860 -40.94713 -38.26909 -38.06263 -38.02374 -37.63138 -36.75526 -34.65316 -34.26600 -33.05382 -30.91190 -27.33567 -27.27684 -26.90579 -25.50080 -23.55584 -22.46574 -20.29273 -19.96917 -19.29851 -18.79862 -18.64751 -18.31848 -17.59436 -17.46484 -17.04060 -16.89887 -16.35260 -15.75589 -15.40076 -15.23192 -14.93123 -14.70021 -14.58505 -14.51449 -13.72851 -13.43107 -13.32359 -13.11092 -13.07579 -12.96849 -12.91516 -12.77237 -12.69896 -12.64149 -12.51380 -12.27594 -12.18400 -12.12382 -11.87745 -11.63839 -11.28644 -11.10344 -10.73808 -10.48163 -9.74256 -8.10026 -6.22437 -1.39711 -0.75580 -0.63119 0.28118 0.83558 1.31182 1.43464 1.47753 1.57259 1.95001 2.00006 2.46293 2.66233 2.77337 3.19300 3.21738 3.38755 3.56097 3.60917 3.94346 4.10549 4.12609 4.31859 4.69681 4.78622 4.87052 4.98776 5.03835 5.08873 5.15107 5.23180 5.65232 5.72439 5.79547 5.88750 6.16273 6.32617 6.53131 6.84855 7.46546 8.94403 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.014989 B = 0.004000 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.577707 B = 6998.738028 C = 7862.431828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.266 3.734 3 H 0.024 0.976 4 C -0.535 4.535 5 H 0.058 0.942 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.952 3.048 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.986 5.986 13 C 0.087 3.913 14 S 2.703 3.297 15 O -0.976 6.976 16 O -0.974 6.974 17 C -0.677 4.677 18 C 0.020 3.980 19 C -0.111 4.111 20 C 0.196 3.804 21 Cl 0.016 6.984 22 N -0.449 5.449 23 C 0.182 3.818 24 C 0.528 3.472 25 O -0.510 6.510 26 O -0.469 6.469 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.264 0.736 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.196 0.804 35 H 0.216 0.784 36 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.085 0.462 -17.363 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.163 3.837 3 H 0.041 0.959 4 C -0.574 4.574 5 H 0.076 0.924 6 C -0.179 4.179 7 N -0.552 5.552 8 Si 0.778 3.222 9 H -0.194 1.194 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.829 5.829 13 C -0.057 4.057 14 S 2.790 3.210 15 O -0.966 6.966 16 O -0.964 6.964 17 C -0.763 4.763 18 C -0.005 4.005 19 C -0.131 4.131 20 C 0.030 3.970 21 Cl 0.045 6.955 22 N -0.163 5.163 23 C 0.043 3.957 24 C 0.369 3.631 25 O -0.399 6.399 26 O -0.282 6.282 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.213 0.787 35 H 0.233 0.767 36 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges -6.190 1.101 -17.804 18.882 hybrid contribution 0.379 -0.143 1.209 1.275 sum -5.812 0.959 -16.595 17.609 Atomic orbital electron populations 1.22022 0.95755 1.01300 1.01174 1.18588 0.93030 0.91356 0.80750 0.95857 1.21647 1.31561 1.13011 0.91212 0.92356 1.25563 0.95244 0.95668 1.01458 1.69963 1.37379 1.23579 1.24279 0.85606 0.78321 0.78602 0.79702 1.19443 1.21441 1.19801 1.57501 1.70563 1.21032 1.33767 1.21644 1.03110 0.79485 1.01505 1.01804 0.73373 0.73120 0.72691 1.93483 1.68597 1.59725 1.74804 1.93530 1.72846 1.57778 1.72227 1.32381 1.14146 1.11671 1.18139 1.21948 0.88551 0.95402 0.94645 1.22803 1.04583 0.93409 0.92329 1.22388 0.89075 0.92995 0.92514 1.98456 1.62879 1.79465 1.54693 1.67006 1.04830 1.24404 1.20059 1.19208 0.91225 0.92904 0.92383 1.20552 0.87333 0.78374 0.76834 1.91006 1.57076 1.53565 1.38220 1.84555 1.36365 1.47684 1.59548 0.93635 0.92381 0.91357 0.92655 0.93399 0.88458 0.89540 0.78671 0.76717 0.69336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.60 8.89 71.98 0.64 -4.96 16 2 C 0.27 12.36 2.62 44.24 0.12 12.48 16 3 H 0.02 1.27 6.93 -2.39 -0.02 1.25 16 4 C -0.53 -27.90 8.37 25.60 0.21 -27.69 16 5 H 0.06 3.04 7.52 -2.91 -0.02 3.02 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -49.64 11.32 21.45 0.24 -49.40 16 8 Si 0.95 42.35 29.54 68.60 2.03 44.37 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 10 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 12 N -0.99 -38.43 2.18 -520.45 -1.13 -39.57 16 13 C 0.09 2.64 9.23 127.77 1.18 3.82 16 14 S 2.70 112.30 3.96 -56.49 -0.22 112.08 16 15 O -0.98 -42.69 16.44 -121.04 -1.99 -44.68 16 16 O -0.97 -49.25 14.16 -118.53 -1.68 -50.93 16 17 C -0.68 -22.04 5.88 22.62 0.13 -21.90 16 18 C 0.02 0.45 9.41 22.44 0.21 0.66 16 19 C -0.11 -1.89 9.88 22.47 0.22 -1.66 16 20 C 0.20 4.25 7.27 84.86 0.62 4.87 16 21 Cl 0.02 0.27 29.11 -2.72 -0.08 0.19 16 22 N -0.45 -12.67 10.10 -175.90 -1.78 -14.45 16 23 C 0.18 5.98 6.75 41.85 0.28 6.26 16 24 C 0.53 17.85 8.18 70.43 0.58 18.42 16 25 O -0.51 -20.92 12.58 29.94 0.38 -20.54 16 26 O -0.47 -11.36 13.25 -55.90 -0.74 -12.10 16 27 H 0.04 1.40 7.01 -2.39 -0.02 1.39 16 28 H 0.06 2.01 6.69 -2.39 -0.02 1.99 16 29 H 0.07 3.13 6.07 -2.39 -0.01 3.12 16 30 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 31 H 0.05 1.55 8.00 -2.39 -0.02 1.53 16 32 H 0.10 2.48 6.45 -2.39 -0.02 2.47 16 33 H 0.09 2.06 7.61 -2.38 -0.02 2.04 16 34 H 0.20 3.48 6.16 -2.91 -0.02 3.47 16 35 H 0.22 1.45 8.06 -2.91 -0.02 1.43 16 36 H 0.44 5.77 9.11 -74.05 -0.67 5.09 16 Total: -1.00 -77.87 333.65 0.16 -77.71 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 0.50 Total: 5.47 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: 4.64 Total: -8.16 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -2.67 Total: -103.41 kcal Atomic # 8 Polarization: -124.21 SS G_CDS: -4.03 Total: -128.24 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 112.30 SS G_CDS: -0.22 Total: 112.08 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -0.08 Total: 0.19 kcal Total: -77.87 0.16 -77.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833516422.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.133 kcal (2) G-P(sol) polarization free energy of solvation -77.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds