Wall clock time and date at job start Wed Apr 1 2020 05:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35528 * 116.99706 * 179.97438 * 3 2 1 5 5 N 1.32409 * 119.52953 * 359.73262 * 4 3 2 6 6 C 1.31653 * 121.80787 * 179.74922 * 5 4 3 7 7 C 1.39551 * 120.65326 * 0.51977 * 6 5 4 8 8 C 1.47611 * 120.49319 * 179.76423 * 7 6 5 9 9 O 1.21580 * 119.99883 * 179.97438 * 8 7 6 10 10 N 1.34772 * 120.00213 * 359.97438 * 8 7 6 11 11 S 1.65606 * 119.99980 * 179.97438 * 10 8 7 12 12 O 1.42102 * 104.27794 * 181.07612 * 11 10 8 13 13 O 1.42103 * 104.27434 * 308.92771 * 11 10 8 14 14 C 1.81394 * 104.44945 * 65.00198 * 11 10 8 15 15 C 1.50699 * 109.47002 * 180.02562 * 14 11 10 16 16 H 1.07999 * 120.00319 * 359.97438 * 15 14 11 17 17 C 1.37877 * 120.00228 * 180.02562 * 15 14 11 18 18 N 1.31517 * 119.99784 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00279 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47088 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47128 * 119.99869 * 19 17 15 22 22 H 1.48496 * 109.47176 * 239.99777 * 19 17 15 23 23 C 1.40250 * 119.00770 * 359.74983 * 7 6 5 24 24 C 1.38086 * 118.34746 * 359.97438 * 23 7 6 25 25 Cl 1.73597 * 120.37620 * 179.97438 * 24 23 7 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 31 31 H 1.08002 * 119.66989 * 180.24536 * 6 5 4 32 32 H 0.97001 * 120.00438 * 0.02562 * 10 8 7 33 33 H 1.09005 * 109.47252 * 299.99617 * 14 11 10 34 34 H 1.08995 * 109.47214 * 59.99872 * 14 11 10 35 35 H 0.97001 * 120.00326 * 180.02562 * 18 17 15 36 36 H 1.08005 * 120.82310 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3498 1.5249 0.0005 5 7 4.1478 0.4683 0.0064 6 6 5.4588 0.5888 0.0023 7 6 6.0574 1.8494 0.0024 8 6 7.5277 1.9803 0.0030 9 8 8.0398 3.0830 0.0026 10 7 8.3025 0.8776 0.0040 11 16 9.9520 1.0246 0.0040 12 8 10.4233 -0.3158 -0.0207 13 8 10.2243 1.9167 -1.0680 14 6 10.3368 1.8055 1.5954 15 6 11.8271 1.9949 1.7147 16 1 12.4777 1.6769 0.9135 17 6 12.3601 2.5732 2.8471 18 7 11.5679 2.9600 3.8230 19 14 14.2075 2.8074 2.9952 20 1 14.8713 2.2932 1.7705 21 1 14.5122 4.2522 3.1534 22 1 14.7073 2.0636 4.1793 23 6 5.2412 2.9899 0.0015 24 6 3.8714 2.8158 0.0001 25 17 2.8118 4.1909 -0.0003 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 6.0770 -0.2968 0.0033 32 1 7.8941 -0.0022 0.0039 33 1 9.8420 2.7750 1.6535 34 1 9.9850 1.1687 2.4071 35 1 11.9428 3.3672 4.6196 36 1 5.6734 3.9797 0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835411149.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:28 Heat of formation + Delta-G solvation = -119.190098 kcal Electronic energy + Delta-G solvation = -25405.424653 eV Core-core repulsion = 21236.511478 eV Total energy + Delta-G solvation = -4168.913175 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.35820 -39.85708 -38.26412 -36.92578 -36.31358 -35.25529 -34.42674 -33.38862 -32.88467 -32.46262 -30.43093 -29.09888 -25.23295 -24.75027 -23.58934 -22.83795 -21.73887 -19.54370 -19.08559 -18.43885 -17.64613 -17.17058 -16.86101 -16.42056 -15.87774 -15.79161 -15.14805 -15.03496 -14.63702 -14.57789 -14.39608 -14.19596 -14.04388 -13.42063 -13.00059 -12.87774 -12.58797 -12.37632 -12.23881 -12.05480 -12.00099 -11.49463 -11.44579 -11.36555 -11.27177 -11.20699 -10.95982 -10.74712 -10.65769 -10.59567 -10.18286 -10.02575 -9.82188 -9.23787 -8.92168 -8.74186 -6.36079 -4.47430 0.16026 0.55139 0.92985 1.67243 2.35476 2.38715 3.01873 3.19356 3.26610 3.28172 3.33121 3.65823 4.02431 4.21335 4.29613 4.38598 4.50053 4.58558 4.59927 4.68536 4.91048 4.94971 5.00591 5.08338 5.14658 5.29348 5.40426 5.45256 5.62142 5.71395 6.50974 6.61217 6.69517 6.85410 7.10738 7.38532 7.54604 7.70726 8.53860 9.20340 10.75665 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.018718 B = 0.002570 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.500621 B =10892.085385 C =11472.672095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.290 6.290 4 C 0.360 3.640 5 N -0.528 5.528 6 C 0.189 3.811 7 C -0.216 4.216 8 C 0.590 3.410 9 O -0.476 6.476 10 N -1.057 6.057 11 S 2.553 3.447 12 O -0.965 6.965 13 O -0.949 6.949 14 C -0.403 4.403 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.077 3.923 18 N -0.876 5.876 19 Si 0.907 3.093 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.278 1.278 23 C 0.031 3.969 24 C -0.120 4.120 25 Cl -0.033 7.033 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.175 0.825 32 H 0.422 0.578 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.269 0.731 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.136 -5.144 -5.495 23.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.196 6.196 4 C 0.181 3.819 5 N -0.252 5.252 6 C 0.031 3.969 7 C -0.223 4.223 8 C 0.376 3.624 9 O -0.348 6.348 10 N -0.816 5.816 11 S 2.655 3.345 12 O -0.956 6.956 13 O -0.939 6.939 14 C -0.540 4.540 15 C -0.574 4.574 16 H 0.090 0.910 17 C -0.129 4.129 18 N -0.512 5.512 19 Si 0.733 3.267 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.203 1.203 23 C 0.005 3.995 24 C -0.149 4.149 25 Cl -0.004 7.004 26 H 0.100 0.900 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.192 0.808 32 H 0.257 0.743 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -21.997 -5.055 -6.085 23.376 hybrid contribution 0.711 0.499 0.760 1.154 sum -21.286 -4.557 -5.326 22.410 Atomic orbital electron populations 1.21829 0.92569 1.03124 1.03565 1.22779 0.95151 0.80249 1.03095 1.86304 1.15648 1.31511 1.86100 1.19702 0.85029 0.88228 0.88985 1.67554 1.06178 1.30944 1.20495 1.22818 0.89270 0.96620 0.88195 1.20742 0.94531 0.94574 1.12502 1.17566 0.86418 0.83906 0.74535 1.91020 1.74552 1.24528 1.44689 1.55503 1.30480 1.14786 1.80802 1.07249 0.71131 0.75330 0.80777 1.93530 1.76603 1.36531 1.88895 1.93540 1.80801 1.66377 1.53174 1.27606 1.06779 1.08827 1.10761 1.20319 0.87452 1.44459 1.05208 0.91010 1.24923 0.99372 0.93809 0.94836 1.69961 1.35550 1.38773 1.06934 0.86273 0.83326 0.78353 0.78731 1.18940 1.20263 1.20316 1.21588 0.89501 1.00866 0.87539 1.20712 0.91944 0.87798 1.14485 1.98394 1.64609 1.40397 1.97034 0.90024 0.91457 0.91489 0.90984 0.91058 0.80809 0.74321 0.88261 0.89567 0.92157 0.81213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.28 37.16 0.38 -0.40 16 2 C 0.06 0.44 6.02 37.16 0.22 0.67 16 3 O -0.29 -2.85 9.57 -18.28 -0.17 -3.03 16 4 C 0.36 3.91 7.49 -16.94 -0.13 3.78 16 5 N -0.53 -5.46 9.18 -12.94 -0.12 -5.58 16 6 C 0.19 1.85 10.71 -17.14 -0.18 1.67 16 7 C -0.22 -2.60 5.89 -104.83 -0.62 -3.22 16 8 C 0.59 9.17 7.51 -12.44 -0.09 9.08 16 9 O -0.48 -9.29 14.51 -11.83 -0.17 -9.46 16 10 N -1.06 -15.67 5.56 30.47 0.17 -15.50 16 11 S 2.55 52.56 5.03 -107.50 -0.54 52.02 16 12 O -0.96 -20.92 18.08 -57.54 -1.04 -21.96 16 13 O -0.95 -22.64 17.04 -64.79 -1.10 -23.75 16 14 C -0.40 -9.66 5.64 36.01 0.20 -9.45 16 15 C -0.53 -14.63 9.13 -34.44 -0.31 -14.95 16 16 H 0.07 1.92 7.71 -52.49 -0.40 1.51 16 17 C 0.08 2.12 5.46 -17.82 -0.10 2.02 16 18 N -0.88 -24.66 13.29 55.43 0.74 -23.92 16 19 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 C 0.03 0.36 9.50 -38.88 -0.37 -0.01 16 24 C -0.12 -1.32 6.35 -39.27 -0.25 -1.57 16 25 Cl -0.03 -0.34 28.52 -51.86 -1.48 -1.82 16 26 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 30 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.18 1.12 6.41 -52.49 -0.34 0.79 16 32 H 0.42 4.28 6.84 -34.47 -0.24 4.04 16 33 H 0.10 2.49 7.19 -51.92 -0.37 2.11 16 34 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.17 1.90 7.73 -52.48 -0.41 1.50 16 LS Contribution 348.56 15.07 5.25 5.25 Total: -1.00 -35.32 348.56 -8.16 -43.48 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -3.42 Total: 0.82 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -1.24 Total: -12.38 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.79 Total: -45.01 kcal Atomic # 8 Polarization: -55.70 SS G_CDS: -2.49 Total: -58.19 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 52.56 SS G_CDS: -0.54 Total: 52.02 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.48 Total: -1.82 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.32 -8.16 -43.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835411149.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.714 kcal (2) G-P(sol) polarization free energy of solvation -35.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds