Wall clock time and date at job start Wed Apr 1 2020 05:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28474 * 124.93249 * 2 1 4 4 C 1.31829 * 110.13597 * 179.97438 * 3 2 1 5 5 C 1.47581 * 126.46153 * 179.97438 * 4 3 2 6 6 O 1.21498 * 119.99761 * 180.02562 * 5 4 3 7 7 O 1.34725 * 120.00140 * 0.02641 * 5 4 3 8 8 C 1.45206 * 116.99762 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.46881 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46889 * 179.97438 * 9 8 7 11 11 S 1.80999 * 109.46877 * 180.02562 * 10 9 8 12 12 C 1.76197 * 99.99798 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00553 * 359.97438 * 12 11 10 14 14 C 1.38805 * 120.00128 * 180.02562 * 12 11 10 15 15 N 1.31635 * 119.99688 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00173 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46694 * 60.00305 * 16 14 12 18 18 H 1.48500 * 109.47142 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47363 * 299.99989 * 16 14 12 20 20 C 1.41526 * 107.07350 * 0.02562 * 4 3 2 21 21 C 1.35467 * 105.52245 * 359.97438 * 20 4 3 22 22 Br 1.89103 * 126.43075 * 180.02562 * 21 20 4 23 23 H 1.09000 * 109.47414 * 90.03015 * 1 2 3 24 24 H 1.09001 * 109.47206 * 210.02549 * 1 2 3 25 25 H 1.08998 * 109.47627 * 330.02872 * 1 2 3 26 26 H 1.09002 * 109.46808 * 299.99574 * 8 7 5 27 27 H 1.08996 * 109.47428 * 60.00252 * 8 7 5 28 28 H 1.08996 * 109.46761 * 300.00041 * 9 8 7 29 29 H 1.09004 * 109.46811 * 60.00152 * 9 8 7 30 30 H 1.08994 * 109.47167 * 299.99900 * 10 9 8 31 31 H 1.08994 * 109.46713 * 60.00135 * 10 9 8 32 32 H 0.96998 * 119.99495 * 179.97438 * 15 14 12 33 33 H 1.07994 * 127.24037 * 180.02562 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2006 1.0533 0.0000 4 6 3.4752 0.7166 0.0006 5 6 4.6263 1.6402 0.0002 6 8 5.7586 1.1996 0.0003 7 8 4.4216 2.9718 -0.0002 8 6 5.6002 3.8199 -0.0011 9 6 5.1715 5.2887 -0.0009 10 6 6.4134 6.1824 -0.0012 11 16 5.9064 7.9199 -0.0001 12 6 7.4864 8.6996 -0.0014 13 1 8.3846 8.1000 -0.0021 14 6 7.5768 10.0847 -0.0005 15 7 6.4820 10.8157 0.0008 16 14 9.2519 10.9115 -0.0012 17 1 10.0046 10.5036 -1.2146 18 1 9.0761 12.3860 -0.0006 19 1 10.0065 10.5020 1.2104 20 6 3.5314 -0.6976 0.0003 21 6 2.2416 -1.1117 0.0002 22 35 1.6375 -2.9036 0.0006 23 1 -0.3634 -0.0005 -1.0276 24 1 -0.3634 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5134 26 1 6.1956 3.6154 0.8887 27 1 6.1948 3.6148 -0.8913 28 1 4.5759 5.4934 -0.8904 29 1 4.5772 5.4935 0.8896 30 1 7.0087 5.9774 0.8886 31 1 7.0081 5.9776 -0.8913 32 1 6.5452 11.7836 0.0018 33 1 4.4165 -1.3164 0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838298032.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:00 Heat of formation + Delta-G solvation = -11.567700 kcal Electronic energy + Delta-G solvation = -18656.748780 eV Core-core repulsion = 15278.074777 eV Total energy + Delta-G solvation = -3378.674003 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.21858 -40.20011 -36.70183 -34.19621 -33.43220 -32.98525 -32.42364 -29.99124 -28.47847 -26.52801 -25.46332 -23.84568 -21.91368 -21.31125 -20.55897 -18.08849 -17.54494 -17.25920 -17.11911 -16.41260 -16.39555 -14.80324 -14.66387 -14.61227 -14.39933 -14.00206 -13.51209 -13.41235 -13.21428 -12.74049 -12.71636 -12.10203 -11.92794 -11.77575 -11.32644 -11.11571 -11.04606 -10.96148 -10.95622 -10.79488 -10.63888 -10.25939 -9.75112 -9.62800 -9.55010 -9.05102 -8.33592 -6.54280 -6.22785 -3.93708 0.51133 0.92819 1.26379 1.78713 2.56954 2.86033 3.23137 3.24491 3.28895 3.54591 3.74321 4.21937 4.42968 4.50022 4.58551 4.77325 4.84298 5.02074 5.12695 5.15748 5.20397 5.40650 5.51538 5.65558 5.80856 5.83085 5.95264 6.17350 6.38745 6.48653 6.70103 7.15252 7.60666 7.67952 8.36532 9.23366 10.85290 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.047876 B = 0.001593 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.709109 B =17568.434400 C =18122.092763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.261 5.261 3 N -0.202 5.202 4 C 0.001 3.999 5 C 0.555 3.445 6 O -0.497 6.497 7 O -0.338 6.338 8 C 0.072 3.928 9 C -0.098 4.098 10 C -0.114 4.114 11 S -0.124 6.124 12 C -0.519 4.519 13 H 0.073 0.927 14 C 0.071 3.929 15 N -0.870 5.870 16 Si 0.920 3.080 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C -0.125 4.125 21 C -0.010 4.010 22 Br 0.035 6.965 23 H 0.095 0.905 24 H 0.100 0.900 25 H 0.109 0.891 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.268 0.732 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.162 -31.274 0.046 34.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.053 5.053 3 N -0.041 5.041 4 C -0.156 4.156 5 C 0.397 3.603 6 O -0.383 6.383 7 O -0.253 6.253 8 C -0.002 4.002 9 C -0.136 4.136 10 C -0.263 4.263 11 S 0.105 5.895 12 C -0.667 4.667 13 H 0.091 0.909 14 C -0.138 4.138 15 N -0.505 5.505 16 Si 0.746 3.254 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.154 4.154 21 C -0.211 4.211 22 Br 0.117 6.883 23 H 0.114 0.886 24 H 0.119 0.881 25 H 0.127 0.873 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -16.961 -30.416 0.048 34.825 hybrid contribution 2.933 -0.294 -0.013 2.948 sum -14.028 -30.710 0.034 33.763 Atomic orbital electron populations 1.22425 0.71938 1.06402 1.05558 1.45798 1.08342 1.01475 1.49729 1.73865 1.02971 1.11938 1.15334 1.20758 0.89930 0.92165 1.12728 1.19359 0.86320 0.81613 0.73050 1.90882 1.23072 1.78417 1.45889 1.86609 1.39375 1.16345 1.83019 1.23370 0.84758 0.89270 1.02847 1.21285 0.98529 0.89337 1.04454 1.23179 0.98823 1.00889 1.03380 1.84661 1.14459 0.93535 1.96882 1.22661 0.91536 0.93743 1.58732 0.90873 1.25023 0.97887 0.96331 0.94552 1.70013 1.27426 1.05983 1.47084 0.86202 0.82343 0.77984 0.78880 1.19911 1.20820 1.19907 1.21645 0.96014 0.93093 1.04661 1.23277 0.92723 0.88691 1.16405 1.96829 1.89085 1.04410 1.98017 0.88613 0.88128 0.87259 0.90852 0.90847 0.90266 0.90269 0.91681 0.91679 0.92217 0.80487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.30 11.12 59.85 0.67 0.97 16 2 N -0.26 -2.26 3.71 -66.19 -0.25 -2.51 16 3 N -0.20 -2.40 11.98 33.40 0.40 -2.00 16 4 C 0.00 0.02 7.16 -82.80 -0.59 -0.57 16 5 C 0.56 8.13 7.97 34.54 0.28 8.40 16 6 O -0.50 -8.01 16.71 -19.27 -0.32 -8.33 16 7 O -0.34 -5.17 10.23 -40.56 -0.41 -5.58 16 8 C 0.07 1.09 5.48 37.16 0.20 1.29 16 9 C -0.10 -1.64 5.60 -26.73 -0.15 -1.79 16 10 C -0.11 -2.30 5.67 37.16 0.21 -2.09 16 11 S -0.12 -3.24 21.44 -107.50 -2.30 -5.54 16 12 C -0.52 -14.89 9.50 30.94 0.29 -14.60 16 13 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 14 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 15 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 16 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 C -0.12 -1.26 10.77 -39.32 -0.42 -1.68 16 21 C -0.01 -0.08 7.35 -16.87 -0.12 -0.21 16 22 Br 0.03 0.20 33.30 -68.01 -2.26 -2.07 16 23 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.10 0.21 7.58 -51.93 -0.39 -0.19 16 25 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 31 H 0.06 1.29 8.14 -51.92 -0.42 0.86 16 32 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.18 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 334.46 15.07 5.04 5.04 Total: -1.00 -33.83 334.46 -7.88 -41.71 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: -3.74 Total: -3.67 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 0.26 Total: -8.35 kcal Atomic # 7 Polarization: -30.67 SS G_CDS: 0.89 Total: -29.78 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.74 Total: -13.91 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.30 Total: -5.54 kcal Atomic # 35 Polarization: 0.20 SS G_CDS: -2.26 Total: -2.07 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.83 -7.88 -41.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838298032.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.138 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds