Wall clock time and date at job start Wed Apr 1 2020 05:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28474 * 124.93249 * 2 1 4 4 C 1.31829 * 110.13597 * 179.97438 * 3 2 1 5 5 C 1.47581 * 126.46153 * 179.97438 * 4 3 2 6 6 O 1.21498 * 119.99761 * 180.02562 * 5 4 3 7 7 O 1.34725 * 120.00140 * 0.02641 * 5 4 3 8 8 C 1.45206 * 116.99762 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.46881 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46889 * 179.97438 * 9 8 7 11 11 S 1.80999 * 109.46877 * 180.02562 * 10 9 8 12 12 C 1.76197 * 99.99798 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00553 * 359.97438 * 12 11 10 14 14 C 1.38805 * 120.00128 * 180.02562 * 12 11 10 15 15 N 1.31635 * 119.99688 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00173 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46694 * 60.00305 * 16 14 12 18 18 H 1.48500 * 109.47142 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47363 * 299.99989 * 16 14 12 20 20 C 1.41526 * 107.07350 * 0.02562 * 4 3 2 21 21 C 1.35467 * 105.52245 * 359.97438 * 20 4 3 22 22 Br 1.89103 * 126.43075 * 180.02562 * 21 20 4 23 23 H 1.09000 * 109.47414 * 90.03015 * 1 2 3 24 24 H 1.09001 * 109.47206 * 210.02549 * 1 2 3 25 25 H 1.08998 * 109.47627 * 330.02872 * 1 2 3 26 26 H 1.09002 * 109.46808 * 299.99574 * 8 7 5 27 27 H 1.08996 * 109.47428 * 60.00252 * 8 7 5 28 28 H 1.08996 * 109.46761 * 300.00041 * 9 8 7 29 29 H 1.09004 * 109.46811 * 60.00152 * 9 8 7 30 30 H 1.08994 * 109.47167 * 299.99900 * 10 9 8 31 31 H 1.08994 * 109.46713 * 60.00135 * 10 9 8 32 32 H 0.96998 * 119.99495 * 179.97438 * 15 14 12 33 33 H 1.07994 * 127.24037 * 180.02562 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2006 1.0533 0.0000 4 6 3.4752 0.7166 0.0006 5 6 4.6263 1.6402 0.0002 6 8 5.7586 1.1996 0.0003 7 8 4.4216 2.9718 -0.0002 8 6 5.6002 3.8199 -0.0011 9 6 5.1715 5.2887 -0.0009 10 6 6.4134 6.1824 -0.0012 11 16 5.9064 7.9199 -0.0001 12 6 7.4864 8.6996 -0.0014 13 1 8.3846 8.1000 -0.0021 14 6 7.5768 10.0847 -0.0005 15 7 6.4820 10.8157 0.0008 16 14 9.2519 10.9115 -0.0012 17 1 10.0046 10.5036 -1.2146 18 1 9.0761 12.3860 -0.0006 19 1 10.0065 10.5020 1.2104 20 6 3.5314 -0.6976 0.0003 21 6 2.2416 -1.1117 0.0002 22 35 1.6375 -2.9036 0.0006 23 1 -0.3634 -0.0005 -1.0276 24 1 -0.3634 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5134 26 1 6.1956 3.6154 0.8887 27 1 6.1948 3.6148 -0.8913 28 1 4.5759 5.4934 -0.8904 29 1 4.5772 5.4935 0.8896 30 1 7.0087 5.9774 0.8886 31 1 7.0081 5.9776 -0.8913 32 1 6.5452 11.7836 0.0018 33 1 4.4165 -1.3164 0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838298032.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:59 Heat of formation + Delta-G solvation = -31.979038 kcal Electronic energy + Delta-G solvation = -18657.633882 eV Core-core repulsion = 15278.074777 eV Total energy + Delta-G solvation = -3379.559105 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.96190 -41.35505 -37.89944 -35.04330 -34.69725 -34.55603 -33.63996 -30.67624 -29.26537 -28.02804 -27.32756 -24.80338 -22.74185 -22.65005 -21.53142 -19.57811 -18.84772 -18.43308 -18.01767 -17.37677 -17.37302 -16.89062 -16.15223 -15.95187 -15.25837 -15.07534 -14.65576 -14.25709 -14.24555 -13.81701 -13.77634 -13.60592 -13.14698 -12.92893 -12.64898 -12.53203 -12.49815 -12.41650 -12.41490 -12.06649 -11.61435 -11.54803 -11.48316 -11.13305 -10.47822 -10.35833 -10.23220 -8.67857 -8.37268 -6.14067 -0.11470 0.02080 0.51697 1.03760 1.31885 1.41995 1.47461 1.57848 1.84961 1.86330 2.27839 2.97087 2.97685 3.29684 3.64497 3.84623 3.91526 3.95769 4.14181 4.18080 4.24542 4.26618 4.33297 4.50683 4.57228 4.68052 4.90925 5.01113 5.06370 5.25335 5.29434 5.40397 6.18304 6.30667 6.62726 7.04874 8.71840 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.047876 B = 0.001593 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.709109 B =17568.434400 C =18122.092763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.251 5.251 3 N -0.224 5.224 4 C -0.027 4.027 5 C 0.557 3.443 6 O -0.518 6.518 7 O -0.346 6.346 8 C 0.079 3.921 9 C -0.086 4.086 10 C -0.091 4.091 11 S -0.187 6.187 12 C -0.541 4.541 13 H 0.075 0.925 14 C 0.015 3.985 15 N -0.907 5.907 16 Si 0.995 3.005 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.264 1.264 20 C -0.133 4.133 21 C -0.005 4.005 22 Br 0.066 6.934 23 H 0.114 0.886 24 H 0.123 0.877 25 H 0.117 0.883 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.272 0.728 33 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.291 -32.973 0.027 36.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.044 5.044 3 N -0.065 5.065 4 C -0.182 4.182 5 C 0.400 3.600 6 O -0.405 6.405 7 O -0.261 6.261 8 C 0.004 3.996 9 C -0.124 4.124 10 C -0.239 4.239 11 S 0.042 5.958 12 C -0.688 4.688 13 H 0.093 0.907 14 C -0.190 4.190 15 N -0.543 5.543 16 Si 0.817 3.183 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.189 1.189 20 C -0.163 4.163 21 C -0.207 4.207 22 Br 0.148 6.852 23 H 0.133 0.867 24 H 0.141 0.859 25 H 0.135 0.865 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -17.108 -32.125 0.029 36.396 hybrid contribution 2.803 0.054 -0.009 2.804 sum -14.305 -32.071 0.020 35.117 Atomic orbital electron populations 1.22894 0.69383 1.07970 1.07315 1.46235 1.09679 1.00869 1.47576 1.73798 1.03002 1.13454 1.16225 1.20643 0.89757 0.92724 1.15102 1.19673 0.86855 0.81273 0.72229 1.90856 1.24003 1.78528 1.47124 1.86590 1.39285 1.17014 1.83245 1.23177 0.84788 0.88028 1.03588 1.21098 0.96874 0.90060 1.04397 1.23057 1.00260 0.96743 1.03879 1.84660 1.15299 0.98790 1.97074 1.23030 0.92149 0.94600 1.59054 0.90663 1.26085 1.02254 0.96960 0.93734 1.70148 1.29927 1.06395 1.47832 0.85051 0.76973 0.76941 0.79362 1.18931 1.19985 1.18920 1.21834 0.97307 0.92162 1.04960 1.23525 0.92317 0.90030 1.14860 1.96871 1.88639 1.01778 1.97887 0.86722 0.85864 0.86487 0.90153 0.90146 0.90373 0.90376 0.91102 0.91100 0.91923 0.79520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 11.12 127.77 1.42 1.77 16 2 N -0.25 -3.95 3.71 -363.32 -1.35 -5.30 16 3 N -0.22 -5.18 11.98 -48.25 -0.58 -5.76 16 4 C -0.03 -0.68 7.16 42.42 0.30 -0.37 16 5 C 0.56 16.34 7.97 70.29 0.56 16.90 16 6 O -0.52 -16.70 16.71 19.84 0.33 -16.37 16 7 O -0.35 -10.53 10.23 -56.35 -0.58 -11.10 16 8 C 0.08 2.33 5.48 71.98 0.39 2.72 16 9 C -0.09 -2.85 5.60 30.60 0.17 -2.68 16 10 C -0.09 -3.63 5.67 71.98 0.41 -3.22 16 11 S -0.19 -9.97 21.44 -56.49 -1.21 -11.18 16 12 C -0.54 -31.29 9.50 67.96 0.65 -30.64 16 13 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 14 C 0.01 0.84 5.49 84.86 0.47 1.31 16 15 N -0.91 -54.88 13.22 21.65 0.29 -54.60 16 16 Si 0.99 44.07 29.55 68.60 2.03 46.10 16 17 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 18 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 19 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 20 C -0.13 -2.59 10.77 22.44 0.24 -2.35 16 21 C -0.01 -0.08 7.35 83.47 0.61 0.53 16 22 Br 0.07 0.61 33.30 -20.37 -0.68 -0.07 16 23 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 24 H 0.12 0.14 7.58 -2.39 -0.02 0.13 16 25 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 30 H 0.07 2.76 8.14 -2.40 -0.02 2.74 16 31 H 0.07 2.76 8.14 -2.40 -0.02 2.74 16 32 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 33 H 0.19 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -73.28 334.46 4.61 -68.67 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: 1.13 Total: 5.65 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 5.23 Total: -16.04 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: -1.64 Total: -65.66 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.24 Total: -27.47 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: -9.97 SS G_CDS: -1.21 Total: -11.18 kcal Atomic # 35 Polarization: 0.61 SS G_CDS: -0.68 Total: -0.07 kcal Total: -73.28 4.61 -68.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838298032.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.692 kcal (2) G-P(sol) polarization free energy of solvation -73.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds