Wall clock time and date at job start Wed Apr 1 2020 05:19:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 N 1.28474 * 124.93249 * 2 1
4 4 C 1.31829 * 110.13597 * 179.97438 * 3 2 1
5 5 C 1.47581 * 126.46153 * 179.97438 * 4 3 2
6 6 O 1.21498 * 119.99761 * 180.02562 * 5 4 3
7 7 O 1.34725 * 120.00140 * 0.02641 * 5 4 3
8 8 C 1.45206 * 116.99762 * 180.02562 * 7 5 4
9 9 C 1.53008 * 109.46881 * 180.02562 * 8 7 5
10 10 C 1.53001 * 109.46889 * 179.97438 * 9 8 7
11 11 S 1.80999 * 109.46877 * 180.02562 * 10 9 8
12 12 C 1.76197 * 99.99798 * 180.02562 * 11 10 9
13 13 H 1.08000 * 120.00553 * 359.97438 * 12 11 10
14 14 C 1.38805 * 120.00128 * 180.02562 * 12 11 10
15 15 N 1.31635 * 119.99688 * 359.97438 * 14 12 11
16 16 Si 1.86799 * 120.00173 * 179.97438 * 14 12 11
17 17 H 1.48502 * 109.46694 * 60.00305 * 16 14 12
18 18 H 1.48500 * 109.47142 * 179.97438 * 16 14 12
19 19 H 1.48498 * 109.47363 * 299.99989 * 16 14 12
20 20 C 1.41526 * 107.07350 * 0.02562 * 4 3 2
21 21 C 1.35467 * 105.52245 * 359.97438 * 20 4 3
22 22 Br 1.89103 * 126.43075 * 180.02562 * 21 20 4
23 23 H 1.09000 * 109.47414 * 90.03015 * 1 2 3
24 24 H 1.09001 * 109.47206 * 210.02549 * 1 2 3
25 25 H 1.08998 * 109.47627 * 330.02872 * 1 2 3
26 26 H 1.09002 * 109.46808 * 299.99574 * 8 7 5
27 27 H 1.08996 * 109.47428 * 60.00252 * 8 7 5
28 28 H 1.08996 * 109.46761 * 300.00041 * 9 8 7
29 29 H 1.09004 * 109.46811 * 60.00152 * 9 8 7
30 30 H 1.08994 * 109.47167 * 299.99900 * 10 9 8
31 31 H 1.08994 * 109.46713 * 60.00135 * 10 9 8
32 32 H 0.96998 * 119.99495 * 179.97438 * 15 14 12
33 33 H 1.07994 * 127.24037 * 180.02562 * 20 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2006 1.0533 0.0000
4 6 3.4752 0.7166 0.0006
5 6 4.6263 1.6402 0.0002
6 8 5.7586 1.1996 0.0003
7 8 4.4216 2.9718 -0.0002
8 6 5.6002 3.8199 -0.0011
9 6 5.1715 5.2887 -0.0009
10 6 6.4134 6.1824 -0.0012
11 16 5.9064 7.9199 -0.0001
12 6 7.4864 8.6996 -0.0014
13 1 8.3846 8.1000 -0.0021
14 6 7.5768 10.0847 -0.0005
15 7 6.4820 10.8157 0.0008
16 14 9.2519 10.9115 -0.0012
17 1 10.0046 10.5036 -1.2146
18 1 9.0761 12.3860 -0.0006
19 1 10.0065 10.5020 1.2104
20 6 3.5314 -0.6976 0.0003
21 6 2.2416 -1.1117 0.0002
22 35 1.6375 -2.9036 0.0006
23 1 -0.3634 -0.0005 -1.0276
24 1 -0.3634 -0.8898 0.5142
25 1 -0.3634 0.8902 0.5134
26 1 6.1956 3.6154 0.8887
27 1 6.1948 3.6148 -0.8913
28 1 4.5759 5.4934 -0.8904
29 1 4.5772 5.4935 0.8896
30 1 7.0087 5.9774 0.8886
31 1 7.0081 5.9776 -0.8913
32 1 6.5452 11.7836 0.0018
33 1 4.4165 -1.3164 0.0010
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000838298032.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:19:59
Heat of formation + Delta-G solvation = -31.979038 kcal
Electronic energy + Delta-G solvation = -18657.633882 eV
Core-core repulsion = 15278.074777 eV
Total energy + Delta-G solvation = -3379.559105 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 347.993 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-43.96190 -41.35505 -37.89944 -35.04330 -34.69725 -34.55603 -33.63996 -30.67624
-29.26537 -28.02804 -27.32756 -24.80338 -22.74185 -22.65005 -21.53142 -19.57811
-18.84772 -18.43308 -18.01767 -17.37677 -17.37302 -16.89062 -16.15223 -15.95187
-15.25837 -15.07534 -14.65576 -14.25709 -14.24555 -13.81701 -13.77634 -13.60592
-13.14698 -12.92893 -12.64898 -12.53203 -12.49815 -12.41650 -12.41490 -12.06649
-11.61435 -11.54803 -11.48316 -11.13305 -10.47822 -10.35833 -10.23220 -8.67857
-8.37268 -6.14067 -0.11470 0.02080 0.51697 1.03760 1.31885 1.41995
1.47461 1.57848 1.84961 1.86330 2.27839 2.97087 2.97685 3.29684
3.64497 3.84623 3.91526 3.95769 4.14181 4.18080 4.24542 4.26618
4.33297 4.50683 4.57228 4.68052 4.90925 5.01113 5.06370 5.25335
5.29434 5.40397 6.18304 6.30667 6.62726 7.04874 8.71840
Molecular weight = 347.99amu
Principal moments of inertia in cm(-1)
A = 0.047876 B = 0.001593 C = 0.001545
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 584.709109 B =17568.434400 C =18122.092763
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.062 3.938
2 N -0.251 5.251
3 N -0.224 5.224
4 C -0.027 4.027
5 C 0.557 3.443
6 O -0.518 6.518
7 O -0.346 6.346
8 C 0.079 3.921
9 C -0.086 4.086
10 C -0.091 4.091
11 S -0.187 6.187
12 C -0.541 4.541
13 H 0.075 0.925
14 C 0.015 3.985
15 N -0.907 5.907
16 Si 0.995 3.005
17 H -0.265 1.265
18 H -0.275 1.275
19 H -0.264 1.264
20 C -0.133 4.133
21 C -0.005 4.005
22 Br 0.066 6.934
23 H 0.114 0.886
24 H 0.123 0.877
25 H 0.117 0.883
26 H 0.080 0.920
27 H 0.080 0.920
28 H 0.078 0.922
29 H 0.078 0.922
30 H 0.070 0.930
31 H 0.070 0.930
32 H 0.272 0.728
33 H 0.188 0.812
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.291 -32.973 0.027 36.346
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 N -0.044 5.044
3 N -0.065 5.065
4 C -0.182 4.182
5 C 0.400 3.600
6 O -0.405 6.405
7 O -0.261 6.261
8 C 0.004 3.996
9 C -0.124 4.124
10 C -0.239 4.239
11 S 0.042 5.958
12 C -0.688 4.688
13 H 0.093 0.907
14 C -0.190 4.190
15 N -0.543 5.543
16 Si 0.817 3.183
17 H -0.189 1.189
18 H -0.200 1.200
19 H -0.189 1.189
20 C -0.163 4.163
21 C -0.207 4.207
22 Br 0.148 6.852
23 H 0.133 0.867
24 H 0.141 0.859
25 H 0.135 0.865
26 H 0.098 0.902
27 H 0.099 0.901
28 H 0.096 0.904
29 H 0.096 0.904
30 H 0.089 0.911
31 H 0.089 0.911
32 H 0.081 0.919
33 H 0.205 0.795
Dipole moment (debyes) X Y Z Total
from point charges -17.108 -32.125 0.029 36.396
hybrid contribution 2.803 0.054 -0.009 2.804
sum -14.305 -32.071 0.020 35.117
Atomic orbital electron populations
1.22894 0.69383 1.07970 1.07315 1.46235 1.09679 1.00869 1.47576
1.73798 1.03002 1.13454 1.16225 1.20643 0.89757 0.92724 1.15102
1.19673 0.86855 0.81273 0.72229 1.90856 1.24003 1.78528 1.47124
1.86590 1.39285 1.17014 1.83245 1.23177 0.84788 0.88028 1.03588
1.21098 0.96874 0.90060 1.04397 1.23057 1.00260 0.96743 1.03879
1.84660 1.15299 0.98790 1.97074 1.23030 0.92149 0.94600 1.59054
0.90663 1.26085 1.02254 0.96960 0.93734 1.70148 1.29927 1.06395
1.47832 0.85051 0.76973 0.76941 0.79362 1.18931 1.19985 1.18920
1.21834 0.97307 0.92162 1.04960 1.23525 0.92317 0.90030 1.14860
1.96871 1.88639 1.01778 1.97887 0.86722 0.85864 0.86487 0.90153
0.90146 0.90373 0.90376 0.91102 0.91100 0.91923 0.79520
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.35 11.12 127.77 1.42 1.77 16
2 N -0.25 -3.95 3.71 -363.32 -1.35 -5.30 16
3 N -0.22 -5.18 11.98 -48.25 -0.58 -5.76 16
4 C -0.03 -0.68 7.16 42.42 0.30 -0.37 16
5 C 0.56 16.34 7.97 70.29 0.56 16.90 16
6 O -0.52 -16.70 16.71 19.84 0.33 -16.37 16
7 O -0.35 -10.53 10.23 -56.35 -0.58 -11.10 16
8 C 0.08 2.33 5.48 71.98 0.39 2.72 16
9 C -0.09 -2.85 5.60 30.60 0.17 -2.68 16
10 C -0.09 -3.63 5.67 71.98 0.41 -3.22 16
11 S -0.19 -9.97 21.44 -56.49 -1.21 -11.18 16
12 C -0.54 -31.29 9.50 67.96 0.65 -30.64 16
13 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16
14 C 0.01 0.84 5.49 84.86 0.47 1.31 16
15 N -0.91 -54.88 13.22 21.65 0.29 -54.60 16
16 Si 0.99 44.07 29.55 68.60 2.03 46.10 16
17 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16
18 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16
19 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16
20 C -0.13 -2.59 10.77 22.44 0.24 -2.35 16
21 C -0.01 -0.08 7.35 83.47 0.61 0.53 16
22 Br 0.07 0.61 33.30 -20.37 -0.68 -0.07 16
23 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16
24 H 0.12 0.14 7.58 -2.39 -0.02 0.13 16
25 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16
26 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16
27 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16
28 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16
29 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16
30 H 0.07 2.76 8.14 -2.40 -0.02 2.74 16
31 H 0.07 2.76 8.14 -2.40 -0.02 2.74 16
32 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16
33 H 0.19 3.05 8.06 -2.91 -0.02 3.03 16
Total: -1.00 -73.28 334.46 4.61 -68.67
By element:
Atomic # 1 Polarization: 4.52 SS G_CDS: 1.13 Total: 5.65 kcal
Atomic # 6 Polarization: -21.26 SS G_CDS: 5.23 Total: -16.04 kcal
Atomic # 7 Polarization: -64.02 SS G_CDS: -1.64 Total: -65.66 kcal
Atomic # 8 Polarization: -27.22 SS G_CDS: -0.24 Total: -27.47 kcal
Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal
Atomic # 16 Polarization: -9.97 SS G_CDS: -1.21 Total: -11.18 kcal
Atomic # 35 Polarization: 0.61 SS G_CDS: -0.68 Total: -0.07 kcal
Total: -73.28 4.61 -68.67 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000838298032.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.692 kcal
(2) G-P(sol) polarization free energy of solvation -73.278 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.586 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.671 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.979 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds