Wall clock time and date at job start Wed Apr 1 2020 05:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.47061 * 240.00082 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.46499 * 109.46992 * 179.97438 * 13 11 10 15 15 C 1.35859 * 119.62253 * 90.00119 * 14 13 11 16 16 C 1.35415 * 120.69864 * 179.97438 * 15 14 13 17 17 Cl 1.73605 * 120.02996 * 180.02562 * 16 15 14 18 18 C 1.40271 * 119.93885 * 359.97438 * 16 15 14 19 19 C 1.36437 * 119.26466 * 359.97438 * 18 16 15 20 20 Br 1.89103 * 120.34877 * 180.02562 * 19 18 16 21 21 C 1.34658 * 119.62678 * 269.72426 * 14 13 11 22 22 O 1.22073 * 119.97506 * 0.02562 * 21 14 13 23 23 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 25 25 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 26 26 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 27 27 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 28 28 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 29 29 H 1.08004 * 119.65141 * 359.95298 * 15 14 13 30 30 H 1.08005 * 120.37219 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 7 2.0007 -7.2975 0.0032 15 6 1.6664 -7.8797 -1.1779 16 6 0.9899 -9.0525 -1.2034 17 17 0.5721 -9.7816 -2.7225 18 6 0.6280 -9.6783 -0.0013 19 6 0.9657 -9.0923 1.1836 20 35 0.4939 -9.9096 2.8224 21 6 1.6714 -7.8761 1.1737 22 8 1.9829 -7.3428 2.2266 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 3.1568 -3.4354 0.0021 27 1 3.3612 -5.9713 -0.8858 28 1 3.3585 -5.9707 0.8942 29 1 1.9428 -7.4020 -2.1063 30 1 0.0881 -10.6136 -0.0135 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842632035.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:34 Heat of formation + Delta-G solvation = -36.759039 kcal Electronic energy + Delta-G solvation = -19518.089259 eV Core-core repulsion = 16000.446076 eV Total energy + Delta-G solvation = -3517.643183 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.966 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.77116 -38.86999 -37.59205 -36.55826 -35.00279 -34.32971 -32.48647 -31.50957 -29.30989 -29.08221 -26.90765 -24.17463 -23.42131 -22.44547 -20.14054 -18.16806 -18.09055 -17.57521 -16.71956 -16.18266 -15.61052 -15.27790 -14.96605 -14.87768 -14.52216 -14.06617 -13.34805 -13.21431 -13.07410 -12.92289 -12.57434 -12.07943 -11.73236 -11.70363 -11.42766 -11.35740 -11.08146 -10.92997 -10.41111 -10.39118 -10.29926 -9.99160 -9.51563 -9.32408 -8.83736 -8.16446 -8.08516 -6.23578 -4.31776 0.23315 1.14160 1.35041 1.79823 2.42013 2.98741 3.12607 3.21080 3.26365 3.27601 3.82127 4.13548 4.28077 4.28994 4.38987 4.73127 4.99312 5.04878 5.12729 5.16330 5.24928 5.45323 5.87171 6.54687 7.14617 7.19275 7.39196 7.52963 7.65605 7.86743 8.38400 8.61425 8.85293 9.34786 10.86444 Molecular weight = 347.97amu Principal moments of inertia in cm(-1) A = 0.015561 B = 0.002853 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.975070 B = 9812.270136 C =11047.332907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.702 5.702 11 C 0.485 3.515 12 O -0.541 6.541 13 C 0.067 3.933 14 N -0.464 5.464 15 C 0.187 3.813 16 C -0.159 4.159 17 Cl -0.040 7.040 18 C 0.031 3.969 19 C -0.210 4.210 20 Br -0.002 7.002 21 C 0.533 3.467 22 O -0.510 6.510 23 H 0.268 0.732 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.393 0.607 27 H 0.125 0.875 28 H 0.133 0.867 29 H 0.177 0.823 30 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.460 -23.077 -2.838 23.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.350 5.350 11 C 0.267 3.733 12 O -0.419 6.419 13 C -0.058 4.058 14 N -0.173 5.173 15 C 0.055 3.945 16 C -0.192 4.192 17 Cl -0.012 7.012 18 C 0.007 3.993 19 C -0.294 4.294 20 Br 0.083 6.917 21 C 0.330 3.670 22 O -0.388 6.388 23 H 0.077 0.923 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.226 0.774 27 H 0.142 0.858 28 H 0.151 0.849 29 H 0.195 0.805 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.438 -23.022 -1.610 23.501 hybrid contribution 0.811 1.174 -0.656 1.571 sum 5.249 -21.848 -2.266 22.583 Atomic orbital electron populations 1.69957 1.06154 1.27603 1.48402 1.24952 0.94924 0.99517 0.94521 0.86449 0.79414 0.82170 0.78735 1.20019 1.21013 1.19980 1.21150 0.93259 0.90284 1.53881 0.91802 1.19179 0.88167 0.81628 0.97983 1.46403 1.11518 1.05588 1.71531 1.20364 0.89452 0.84634 0.78834 1.90739 1.16245 1.84503 1.50457 1.22096 0.94956 0.81109 1.07665 1.44941 1.46287 1.20074 1.06005 1.21876 0.90811 0.91157 0.90643 1.19603 1.12413 0.98613 0.88520 1.98379 1.92608 1.82107 1.28107 1.21289 0.91060 0.98024 0.88951 1.22525 1.12879 1.00056 0.93936 1.96696 1.91330 1.77741 1.25974 1.16443 0.81522 0.85636 0.83353 1.91043 1.54474 1.64605 1.28726 0.92260 0.95294 0.95303 0.77361 0.85750 0.84918 0.80544 0.82930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.62 13.29 55.43 0.74 -24.89 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.37 29.54 -169.99 -5.02 15.35 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.55 -14.35 9.28 -34.44 -0.32 -14.67 16 8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 9 C 0.25 6.40 5.43 -5.19 -0.03 6.37 16 10 N -0.70 -13.60 5.55 -61.47 -0.34 -13.94 16 11 C 0.48 8.86 7.90 -10.98 -0.09 8.78 16 12 O -0.54 -12.46 16.43 5.56 0.09 -12.37 16 13 C 0.07 0.81 5.82 -5.19 -0.03 0.78 16 14 N -0.46 -6.04 2.08 -120.99 -0.25 -6.29 16 15 C 0.19 1.90 10.04 -16.78 -0.17 1.73 16 16 C -0.16 -1.56 6.29 -39.82 -0.25 -1.81 16 17 Cl -0.04 -0.34 28.95 -51.86 -1.50 -1.84 16 18 C 0.03 0.32 9.63 -39.47 -0.38 -0.06 16 19 C -0.21 -2.79 6.25 -39.33 -0.25 -3.03 16 20 Br 0.00 -0.03 33.23 -68.01 -2.26 -2.29 16 21 C 0.53 8.31 7.41 -15.42 -0.11 8.19 16 22 O -0.51 -9.62 16.01 4.85 0.08 -9.54 16 23 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.39 6.22 8.32 -40.82 -0.34 5.88 16 27 H 0.12 0.89 8.01 -51.93 -0.42 0.47 16 28 H 0.13 1.54 7.38 -51.93 -0.38 1.16 16 29 H 0.18 1.23 8.04 -52.48 -0.42 0.81 16 30 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 311.89 15.07 4.70 4.70 Total: -1.00 -34.60 311.89 -7.85 -42.46 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -2.36 Total: 0.71 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -1.72 Total: 7.94 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.14 Total: -45.11 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.17 Total: -21.91 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.50 Total: -1.84 kcal Atomic # 35 Polarization: -0.03 SS G_CDS: -2.26 Total: -2.29 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.60 -7.85 -42.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842632035.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.697 kcal (2) G-P(sol) polarization free energy of solvation -34.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds