Wall clock time and date at job start Wed Apr 1 2020 05:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.47061 * 240.00082 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.46499 * 109.46992 * 179.97438 * 13 11 10 15 15 C 1.35859 * 119.62253 * 90.00119 * 14 13 11 16 16 C 1.35415 * 120.69864 * 179.97438 * 15 14 13 17 17 Cl 1.73605 * 120.02996 * 180.02562 * 16 15 14 18 18 C 1.40271 * 119.93885 * 359.97438 * 16 15 14 19 19 C 1.36437 * 119.26466 * 359.97438 * 18 16 15 20 20 Br 1.89103 * 120.34877 * 180.02562 * 19 18 16 21 21 C 1.34658 * 119.62678 * 269.72426 * 14 13 11 22 22 O 1.22073 * 119.97506 * 0.02562 * 21 14 13 23 23 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 25 25 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 26 26 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 27 27 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 28 28 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 29 29 H 1.08004 * 119.65141 * 359.95298 * 15 14 13 30 30 H 1.08005 * 120.37219 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 7 2.0007 -7.2975 0.0032 15 6 1.6664 -7.8797 -1.1779 16 6 0.9899 -9.0525 -1.2034 17 17 0.5721 -9.7816 -2.7225 18 6 0.6280 -9.6783 -0.0013 19 6 0.9657 -9.0923 1.1836 20 35 0.4939 -9.9096 2.8224 21 6 1.6714 -7.8761 1.1737 22 8 1.9829 -7.3428 2.2266 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 3.1568 -3.4354 0.0021 27 1 3.3612 -5.9713 -0.8858 28 1 3.3585 -5.9707 0.8942 29 1 1.9428 -7.4020 -2.1063 30 1 0.0881 -10.6136 -0.0135 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842632035.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:33 Heat of formation + Delta-G solvation = -61.476430 kcal Electronic energy + Delta-G solvation = -19519.161085 eV Core-core repulsion = 16000.446076 eV Total energy + Delta-G solvation = -3518.715009 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.966 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.80343 -40.39915 -38.57312 -37.46548 -36.30284 -35.83848 -34.42251 -32.47480 -30.54131 -30.18085 -28.58829 -25.36336 -24.62772 -23.97700 -21.70212 -19.47166 -19.11326 -18.77002 -17.92792 -17.69114 -17.02149 -16.63777 -16.43100 -16.30748 -15.67071 -15.36903 -14.69158 -14.42611 -14.12099 -14.10319 -14.03050 -13.75492 -13.15036 -12.97277 -12.76296 -12.67818 -12.38018 -12.25161 -12.09582 -11.53984 -11.45805 -11.32438 -11.12142 -10.81183 -10.66457 -9.93697 -9.13635 -8.30152 -6.47136 -0.65828 0.23464 0.41131 0.94649 1.43125 1.46866 1.47515 1.54741 1.55838 2.07095 2.33082 2.54233 3.05301 3.31157 3.43472 3.54198 3.75772 3.89790 4.14209 4.16775 4.32588 4.60868 4.98329 5.08152 5.20115 5.41525 5.55368 5.61816 5.81581 6.56209 6.62723 6.75706 7.20376 7.36024 8.81689 Molecular weight = 347.97amu Principal moments of inertia in cm(-1) A = 0.015561 B = 0.002853 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.975070 B = 9812.270136 C =11047.332907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.984 3.016 4 H -0.258 1.258 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.557 4.557 8 H 0.088 0.912 9 C 0.268 3.732 10 N -0.696 5.696 11 C 0.482 3.518 12 O -0.594 6.594 13 C 0.080 3.920 14 N -0.468 5.468 15 C 0.186 3.814 16 C -0.158 4.158 17 Cl -0.021 7.021 18 C 0.053 3.947 19 C -0.243 4.243 20 Br -0.007 7.007 21 C 0.519 3.481 22 O -0.560 6.560 23 H 0.268 0.732 24 H -0.005 1.005 25 H -0.019 1.019 26 H 0.414 0.586 27 H 0.189 0.811 28 H 0.142 0.858 29 H 0.214 0.786 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.686 -23.600 -4.665 25.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.182 1.182 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.594 4.594 8 H 0.106 0.894 9 C 0.145 3.855 10 N -0.346 5.346 11 C 0.268 3.732 12 O -0.476 6.476 13 C -0.044 4.044 14 N -0.176 5.176 15 C 0.056 3.944 16 C -0.191 4.191 17 Cl 0.008 6.992 18 C 0.028 3.972 19 C -0.326 4.326 20 Br 0.077 6.923 21 C 0.319 3.681 22 O -0.443 6.443 23 H 0.077 0.923 24 H 0.013 0.987 25 H -0.001 1.001 26 H 0.251 0.749 27 H 0.206 0.794 28 H 0.160 0.840 29 H 0.231 0.769 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 6.718 -23.593 -3.480 24.776 hybrid contribution 0.046 1.217 -0.199 1.234 sum 6.764 -22.376 -3.679 23.664 Atomic orbital electron populations 1.70129 1.08343 1.28656 1.49894 1.26061 0.95720 1.03944 0.93833 0.85219 0.77906 0.76609 0.79577 1.18226 1.21368 1.18881 1.21597 0.94477 0.90378 1.52995 0.89378 1.18555 0.88626 0.84179 0.94150 1.46058 1.11632 1.04991 1.71961 1.21421 0.89857 0.85418 0.76521 1.90714 1.19159 1.85347 1.52342 1.22194 0.93052 0.77958 1.11188 1.44971 1.46250 1.20082 1.06282 1.22518 0.89939 0.91158 0.90783 1.19752 1.11634 0.98541 0.89133 1.98397 1.92414 1.81764 1.26668 1.21603 0.89122 0.98269 0.88167 1.22507 1.14908 1.00340 0.94858 1.96659 1.91398 1.77461 1.26758 1.16849 0.81460 0.86246 0.83517 1.91002 1.56834 1.66074 1.30389 0.92275 0.98738 1.00144 0.74926 0.79415 0.84005 0.76892 0.80387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.55 13.29 21.45 0.28 -55.27 16 2 C 0.00 0.23 5.46 84.66 0.46 0.69 16 3 Si 0.98 41.29 29.54 68.60 2.03 43.32 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 5 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.56 -29.17 9.28 25.60 0.24 -28.94 16 8 H 0.09 4.08 7.60 -2.91 -0.02 4.06 16 9 C 0.27 14.15 5.43 85.63 0.46 14.62 16 10 N -0.70 -26.75 5.55 -466.78 -2.59 -29.34 16 11 C 0.48 17.40 7.90 87.66 0.69 18.09 16 12 O -0.59 -28.05 16.43 -3.03 -0.05 -28.10 16 13 C 0.08 1.74 5.82 85.63 0.50 2.24 16 14 N -0.47 -11.31 2.08 -654.82 -1.36 -12.67 16 15 C 0.19 3.23 10.04 83.42 0.84 4.07 16 16 C -0.16 -2.69 6.29 22.11 0.14 -2.55 16 17 Cl -0.02 -0.29 28.95 -2.72 -0.08 -0.37 16 18 C 0.05 0.99 9.63 22.34 0.22 1.21 16 19 C -0.24 -6.32 6.25 22.43 0.14 -6.18 16 20 Br -0.01 -0.19 33.23 -20.37 -0.68 -0.86 16 21 C 0.52 16.06 7.41 84.84 0.63 16.69 16 22 O -0.56 -21.62 16.01 -5.55 -0.09 -21.71 16 23 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 24 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 25 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 26 H 0.41 12.30 8.32 -92.71 -0.77 11.53 16 27 H 0.19 1.68 8.01 -2.39 -0.02 1.66 16 28 H 0.14 2.98 7.38 -2.39 -0.02 2.96 16 29 H 0.21 2.00 8.04 -2.91 -0.02 1.97 16 30 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -80.76 311.89 2.22 -78.54 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 0.43 Total: 6.53 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: 4.32 Total: 19.93 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -3.66 Total: -97.28 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -0.14 Total: -49.81 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.37 kcal Atomic # 35 Polarization: -0.19 SS G_CDS: -0.68 Total: -0.86 kcal Total: -80.76 2.22 -78.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842632035.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.065 kcal (2) G-P(sol) polarization free energy of solvation -80.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds