Wall clock time and date at job start Wed Apr 1 2020 05:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00158 * 2 1 4 4 C 1.53004 * 109.46909 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46883 * 65.00509 * 4 3 2 6 6 C 1.36938 * 120.00267 * 269.99760 * 5 4 3 7 7 H 1.08001 * 119.99776 * 140.92433 * 6 5 4 8 8 C 1.38808 * 119.99570 * 320.93381 * 6 5 4 9 9 N 1.31624 * 120.00089 * 161.36682 * 8 6 5 10 10 Si 1.86793 * 120.00131 * 341.35826 * 8 6 5 11 11 H 1.48499 * 109.47312 * 95.27079 * 10 8 6 12 12 H 1.48500 * 109.47365 * 215.27042 * 10 8 6 13 13 H 1.48503 * 109.47446 * 335.27061 * 10 8 6 14 14 C 1.46507 * 119.99971 * 89.99417 * 5 4 3 15 15 C 1.50691 * 109.47248 * 275.54320 * 14 5 4 16 16 C 1.38598 * 120.42283 * 97.25664 * 15 14 5 17 17 C 1.38739 * 118.43397 * 180.02562 * 16 15 14 18 18 Br 1.89102 * 120.41679 * 179.97438 * 17 16 15 19 19 C 1.38291 * 119.17235 * 359.97438 * 17 16 15 20 20 N 1.31873 * 120.76349 * 0.02562 * 19 17 16 21 21 C 1.31976 * 121.71604 * 0.02562 * 20 19 17 22 22 Cl 1.73601 * 119.62092 * 180.02562 * 21 20 19 23 23 H 1.09003 * 109.47095 * 59.99574 * 1 2 3 24 24 H 1.09003 * 109.47433 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99883 * 1 2 3 26 26 H 1.09003 * 109.46595 * 60.00724 * 3 2 1 27 27 H 1.08989 * 109.47606 * 300.00205 * 3 2 1 28 28 H 1.08994 * 109.47379 * 305.00511 * 4 3 2 29 29 H 1.09004 * 109.47144 * 185.00314 * 4 3 2 30 30 H 0.96998 * 120.00148 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.46997 * 155.53937 * 14 5 4 32 32 H 1.09000 * 109.47124 * 35.54521 * 14 5 4 33 33 H 1.08009 * 120.78249 * 0.04080 * 16 15 14 34 34 H 1.07993 * 119.61655 * 179.72222 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0977 -0.7976 -1.3347 7 1 3.8003 -1.3117 -2.2367 8 6 4.6026 -1.5168 -0.2601 9 7 4.3885 -2.8128 -0.1768 10 14 5.5861 -0.6454 1.0675 11 1 4.6875 -0.2861 2.1939 12 1 6.6602 -1.5453 1.5590 13 1 6.1925 0.5881 0.5053 14 6 4.2882 1.3998 -2.4131 15 6 3.0195 1.7054 -3.1666 16 6 2.3511 2.9018 -2.9596 17 6 1.1866 3.1403 -3.6751 18 35 0.2294 4.7535 -3.4359 19 6 0.7345 2.1835 -4.5654 20 7 1.3963 1.0558 -4.7372 21 6 2.5066 0.7948 -4.0733 22 17 3.3344 -0.7072 -4.3425 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6887 1.8462 0.8901 27 1 1.6887 1.8463 -0.8898 28 1 3.8508 0.5683 0.8426 29 1 3.9786 2.1764 0.0903 30 1 4.7417 -3.3154 0.5739 31 1 4.9805 0.8695 -3.0670 32 1 4.7455 2.3310 -2.0787 33 1 2.7280 3.6314 -2.2580 34 1 -0.1735 2.3597 -5.1227 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843412422.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:01 Heat of formation + Delta-G solvation = 24.913572 kcal Electronic energy + Delta-G solvation = -21372.927988 eV Core-core repulsion = 17993.792225 eV Total energy + Delta-G solvation = -3379.135763 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.998 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.24618 -37.44682 -36.24829 -35.69692 -33.12030 -32.53439 -31.28161 -29.66716 -28.87299 -26.29151 -25.70868 -23.59372 -23.07269 -22.06788 -20.51482 -17.30223 -17.14623 -16.46821 -16.08247 -15.53494 -14.92568 -14.80451 -14.54042 -14.20849 -13.97641 -13.48004 -13.28814 -12.84098 -12.57173 -12.15604 -11.96191 -11.80391 -11.56715 -11.32491 -11.06666 -10.84684 -10.69816 -10.62625 -10.52736 -10.27238 -9.74457 -9.61700 -9.54938 -9.28880 -8.87296 -8.61821 -8.33960 -6.86889 -5.84180 -3.33305 0.81809 1.17864 1.38451 2.27980 3.35425 3.49314 3.51650 3.59560 4.49462 4.52726 4.60975 4.71148 4.86816 4.94981 5.00205 5.45516 5.56295 5.64613 5.69888 5.76225 5.79790 5.90863 5.95389 6.05447 6.08946 6.20199 6.28916 6.36258 6.47321 6.65334 7.71518 7.92305 8.13448 8.50393 9.02871 9.80196 10.10613 11.29822 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.015066 B = 0.004852 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.053339 B = 5769.506635 C = 6474.531799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.344 6.344 3 C 0.044 3.956 4 C 0.131 3.869 5 N -0.584 5.584 6 C -0.264 4.264 7 H 0.099 0.901 8 C 0.045 3.955 9 N -0.898 5.898 10 Si 0.873 3.127 11 H -0.288 1.288 12 H -0.304 1.304 13 H -0.271 1.271 14 C 0.178 3.822 15 C -0.109 4.109 16 C -0.038 4.038 17 C -0.152 4.152 18 Br -0.043 7.043 19 C 0.134 3.866 20 N -0.474 5.474 21 C 0.203 3.797 22 Cl 0.009 6.991 23 H 0.026 0.974 24 H 0.079 0.921 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.036 0.964 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.260 0.740 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.145 0.855 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.388 15.846 -6.326 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.262 6.262 3 C -0.036 4.036 4 C 0.005 3.995 5 N -0.304 5.304 6 C -0.392 4.392 7 H 0.116 0.884 8 C -0.155 4.155 9 N -0.539 5.539 10 Si 0.705 3.295 11 H -0.217 1.217 12 H -0.233 1.233 13 H -0.196 1.196 14 C 0.050 3.950 15 C -0.117 4.117 16 C -0.066 4.066 17 C -0.233 4.233 18 Br 0.041 6.959 19 C -0.026 4.026 20 N -0.185 5.185 21 C 0.039 3.961 22 Cl 0.038 6.962 23 H 0.044 0.956 24 H 0.097 0.903 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.163 0.837 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.780 15.300 -6.746 18.443 hybrid contribution 0.509 0.810 1.479 1.762 sum -7.270 16.111 -5.267 18.443 Atomic orbital electron populations 1.22624 0.83798 1.01874 0.98147 1.88293 1.16858 1.26265 1.94764 1.23297 0.97364 0.85308 0.97602 1.21411 0.90356 0.96655 0.91086 1.44043 1.75736 1.03971 1.06632 1.19135 1.36876 0.79273 1.03940 0.88428 1.25377 0.97644 0.94810 0.97663 1.69827 1.45885 1.06970 1.31228 0.86999 0.80407 0.79578 0.82539 1.21668 1.23266 1.19606 1.19981 0.89358 0.95643 0.90033 1.21955 1.01966 0.92000 0.95733 1.21412 0.92145 0.96558 0.96511 1.22888 0.99811 0.95827 1.04816 1.96693 1.73935 1.28237 1.96995 1.22540 0.98316 0.87144 0.94593 1.67225 1.06929 1.19738 1.24630 1.21835 0.91279 0.90007 0.93026 1.98460 1.74332 1.28486 1.94900 0.95558 0.90269 0.95521 0.95507 0.94572 0.91721 0.92682 0.92981 0.89697 0.92846 0.83679 0.81825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 101.05 1.11 1.69 16 2 O -0.34 -7.66 10.18 -35.23 -0.36 -8.01 16 3 C 0.04 0.83 6.20 37.16 0.23 1.06 16 4 C 0.13 2.66 4.93 -4.04 -0.02 2.65 16 5 N -0.58 -12.74 2.04 -174.61 -0.36 -13.09 16 6 C -0.26 -6.90 9.10 -15.06 -0.14 -7.04 16 7 H 0.10 2.68 4.98 -52.49 -0.26 2.42 16 8 C 0.05 1.27 5.36 -17.43 -0.09 1.18 16 9 N -0.90 -27.11 13.97 55.49 0.78 -26.33 16 10 Si 0.87 21.68 24.85 -169.99 -4.22 17.45 16 11 H -0.29 -7.12 6.72 56.52 0.38 -6.74 16 12 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 13 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 14 C 0.18 3.16 5.41 -5.19 -0.03 3.13 16 15 C -0.11 -1.81 4.86 -104.45 -0.51 -2.32 16 16 C -0.04 -0.53 7.79 -39.26 -0.31 -0.84 16 17 C -0.15 -1.97 6.25 -39.38 -0.25 -2.22 16 18 Br -0.04 -0.46 33.74 -68.01 -2.29 -2.75 16 19 C 0.13 1.85 10.94 -17.51 -0.19 1.65 16 20 N -0.47 -7.95 10.34 -10.34 -0.11 -8.06 16 21 C 0.20 3.62 7.27 -17.45 -0.13 3.50 16 22 Cl 0.01 0.18 24.52 -51.86 -1.27 -1.10 16 23 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.65 5.54 -51.94 -0.29 0.36 16 28 H 0.07 1.50 3.18 -51.93 -0.16 1.34 16 29 H 0.05 0.94 7.95 -51.93 -0.41 0.53 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.08 1.54 7.09 -51.93 -0.37 1.18 16 32 H 0.05 0.81 7.88 -51.93 -0.41 0.40 16 33 H 0.15 1.73 8.06 -52.48 -0.42 1.30 16 34 H 0.16 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 313.29 15.07 4.72 4.72 Total: -1.00 -30.79 313.29 -7.03 -37.81 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -3.60 Total: -3.08 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -0.31 Total: 2.44 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.31 Total: -47.49 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.36 Total: -8.01 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.22 Total: 17.45 kcal Atomic # 17 Polarization: 0.18 SS G_CDS: -1.27 Total: -1.10 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.29 Total: -2.75 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.79 -7.03 -37.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843412422.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.726 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds