Wall clock time and date at job start Wed Apr 1 2020 05:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00158 * 2 1 4 4 C 1.53004 * 109.46909 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46883 * 65.00509 * 4 3 2 6 6 C 1.36938 * 120.00267 * 269.99760 * 5 4 3 7 7 H 1.08001 * 119.99776 * 140.92433 * 6 5 4 8 8 C 1.38808 * 119.99570 * 320.93381 * 6 5 4 9 9 N 1.31624 * 120.00089 * 161.36682 * 8 6 5 10 10 Si 1.86793 * 120.00131 * 341.35826 * 8 6 5 11 11 H 1.48499 * 109.47312 * 95.27079 * 10 8 6 12 12 H 1.48500 * 109.47365 * 215.27042 * 10 8 6 13 13 H 1.48503 * 109.47446 * 335.27061 * 10 8 6 14 14 C 1.46507 * 119.99971 * 89.99417 * 5 4 3 15 15 C 1.50691 * 109.47248 * 275.54320 * 14 5 4 16 16 C 1.38598 * 120.42283 * 97.25664 * 15 14 5 17 17 C 1.38739 * 118.43397 * 180.02562 * 16 15 14 18 18 Br 1.89102 * 120.41679 * 179.97438 * 17 16 15 19 19 C 1.38291 * 119.17235 * 359.97438 * 17 16 15 20 20 N 1.31873 * 120.76349 * 0.02562 * 19 17 16 21 21 C 1.31976 * 121.71604 * 0.02562 * 20 19 17 22 22 Cl 1.73601 * 119.62092 * 180.02562 * 21 20 19 23 23 H 1.09003 * 109.47095 * 59.99574 * 1 2 3 24 24 H 1.09003 * 109.47433 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99883 * 1 2 3 26 26 H 1.09003 * 109.46595 * 60.00724 * 3 2 1 27 27 H 1.08989 * 109.47606 * 300.00205 * 3 2 1 28 28 H 1.08994 * 109.47379 * 305.00511 * 4 3 2 29 29 H 1.09004 * 109.47144 * 185.00314 * 4 3 2 30 30 H 0.96998 * 120.00148 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.46997 * 155.53937 * 14 5 4 32 32 H 1.09000 * 109.47124 * 35.54521 * 14 5 4 33 33 H 1.08009 * 120.78249 * 0.04080 * 16 15 14 34 34 H 1.07993 * 119.61655 * 179.72222 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0977 -0.7976 -1.3347 7 1 3.8003 -1.3117 -2.2367 8 6 4.6026 -1.5168 -0.2601 9 7 4.3885 -2.8128 -0.1768 10 14 5.5861 -0.6454 1.0675 11 1 4.6875 -0.2861 2.1939 12 1 6.6602 -1.5453 1.5590 13 1 6.1925 0.5881 0.5053 14 6 4.2882 1.3998 -2.4131 15 6 3.0195 1.7054 -3.1666 16 6 2.3511 2.9018 -2.9596 17 6 1.1866 3.1403 -3.6751 18 35 0.2294 4.7535 -3.4359 19 6 0.7345 2.1835 -4.5654 20 7 1.3963 1.0558 -4.7372 21 6 2.5066 0.7948 -4.0733 22 17 3.3344 -0.7072 -4.3425 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6887 1.8462 0.8901 27 1 1.6887 1.8463 -0.8898 28 1 3.8508 0.5683 0.8426 29 1 3.9786 2.1764 0.0903 30 1 4.7417 -3.3154 0.5739 31 1 4.9805 0.8695 -3.0670 32 1 4.7455 2.3310 -2.0787 33 1 2.7280 3.6314 -2.2580 34 1 -0.1735 2.3597 -5.1227 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843412422.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:01 Heat of formation + Delta-G solvation = 4.491335 kcal Electronic energy + Delta-G solvation = -21373.813562 eV Core-core repulsion = 17993.792225 eV Total energy + Delta-G solvation = -3380.021338 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.998 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.44403 -38.98118 -37.63616 -37.25145 -34.42495 -33.90040 -33.01618 -30.89348 -30.21058 -27.81763 -27.18851 -24.97681 -24.51186 -23.45247 -22.08045 -18.79099 -18.45742 -17.93590 -17.66741 -17.08078 -16.40990 -16.14288 -15.99735 -15.69626 -15.29026 -14.96926 -14.58558 -14.40217 -14.12269 -13.70030 -13.34210 -13.18966 -13.04156 -12.80581 -12.61092 -12.41130 -12.20380 -12.02658 -11.85472 -11.49114 -11.42956 -11.15366 -10.87305 -10.70059 -10.49264 -10.24716 -9.72701 -8.65483 -7.92644 -5.36917 -0.35288 0.03065 0.35687 0.99221 1.39204 1.48874 1.57678 2.39576 2.60048 3.11900 3.24533 3.36985 3.59816 3.66910 3.72198 3.79130 4.28790 4.33699 4.38114 4.46432 4.49526 4.57748 4.63892 4.68071 4.71918 4.81584 4.96236 5.05787 5.10112 5.24851 6.14645 6.48370 6.54087 6.60722 7.14419 7.81587 8.17479 9.25012 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.015066 B = 0.004852 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.053339 B = 5769.506635 C = 6474.531799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.394 6.394 3 C 0.045 3.955 4 C 0.122 3.878 5 N -0.597 5.597 6 C -0.231 4.231 7 H 0.077 0.923 8 C -0.021 4.021 9 N -0.956 5.956 10 Si 0.932 3.068 11 H -0.289 1.289 12 H -0.324 1.324 13 H -0.245 1.245 14 C 0.177 3.823 15 C -0.119 4.119 16 C -0.028 4.028 17 C -0.147 4.147 18 Br -0.009 7.009 19 C 0.136 3.864 20 N -0.497 5.497 21 C 0.181 3.819 22 Cl -0.022 7.022 23 H 0.033 0.967 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.036 0.964 29 H 0.098 0.902 30 H 0.252 0.748 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.174 0.826 34 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.464 20.065 -6.142 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.313 6.313 3 C -0.033 4.033 4 C -0.003 4.003 5 N -0.317 5.317 6 C -0.361 4.361 7 H 0.094 0.906 8 C -0.215 4.215 9 N -0.603 5.603 10 Si 0.763 3.237 11 H -0.218 1.218 12 H -0.254 1.254 13 H -0.169 1.169 14 C 0.050 3.950 15 C -0.126 4.126 16 C -0.056 4.056 17 C -0.228 4.228 18 Br 0.075 6.925 19 C -0.024 4.024 20 N -0.208 5.208 21 C 0.018 3.982 22 Cl 0.007 6.993 23 H 0.052 0.948 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.116 0.884 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.192 0.808 34 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -8.864 19.600 -6.585 22.497 hybrid contribution 0.640 -0.289 1.276 1.457 sum -8.224 19.311 -5.309 21.650 Atomic orbital electron populations 1.22713 0.81805 1.02183 0.99687 1.88226 1.19321 1.28563 1.95149 1.23321 0.96194 0.84456 0.99376 1.21563 0.91778 0.97911 0.89065 1.44107 1.76413 1.02834 1.08373 1.19176 1.33106 0.81545 1.02248 0.90570 1.25966 0.99852 0.95224 1.00480 1.69986 1.48941 1.08883 1.32441 0.86033 0.78466 0.78908 0.80249 1.21775 1.25435 1.16885 1.20087 0.90056 0.96297 0.88522 1.21735 1.01828 0.93042 0.95969 1.21694 0.91775 0.95755 0.96344 1.23035 0.99491 0.96747 1.03575 1.96751 1.73090 1.25831 1.96809 1.23062 0.98577 0.86251 0.94536 1.67160 1.07038 1.21388 1.25237 1.21888 0.92207 0.89531 0.94588 1.98444 1.75099 1.30629 1.95153 0.94807 0.90808 0.92909 0.92834 0.93312 0.94642 0.88431 0.93899 0.90987 0.89004 0.80831 0.79111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.09 11.01 113.37 1.25 2.34 16 2 O -0.39 -17.05 10.18 -148.98 -1.52 -18.56 16 3 C 0.05 1.57 6.20 71.98 0.45 2.02 16 4 C 0.12 4.59 4.93 86.38 0.43 5.01 16 5 N -0.60 -24.97 2.04 -706.34 -1.44 -26.41 16 6 C -0.23 -12.21 9.10 84.03 0.77 -11.44 16 7 H 0.08 4.34 4.98 -2.91 -0.01 4.32 16 8 C -0.02 -1.20 5.36 84.86 0.45 -0.74 16 9 N -0.96 -60.51 13.97 21.65 0.30 -60.21 16 10 Si 0.93 45.47 24.85 68.60 1.70 47.18 16 11 H -0.29 -13.93 6.72 99.48 0.67 -13.27 16 12 H -0.32 -16.63 7.11 99.48 0.71 -15.92 16 13 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16 14 C 0.18 5.86 5.41 85.63 0.46 6.32 16 15 C -0.12 -3.66 4.86 -19.75 -0.10 -3.75 16 16 C -0.03 -0.66 7.79 22.48 0.18 -0.48 16 17 C -0.15 -3.24 6.25 22.40 0.14 -3.10 16 18 Br -0.01 -0.16 33.74 -20.37 -0.69 -0.84 16 19 C 0.14 3.35 10.94 84.70 0.93 4.27 16 20 N -0.50 -16.04 10.34 -186.62 -1.93 -17.97 16 21 C 0.18 6.34 7.27 84.70 0.62 6.96 16 22 Cl -0.02 -0.87 24.52 -2.72 -0.07 -0.94 16 23 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 1.55 5.54 -2.39 -0.01 1.53 16 28 H 0.04 1.57 3.18 -2.39 -0.01 1.57 16 29 H 0.10 2.81 7.95 -2.38 -0.02 2.79 16 30 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 31 H 0.07 2.56 7.09 -2.39 -0.02 2.54 16 32 H 0.09 2.35 7.88 -2.39 -0.02 2.33 16 33 H 0.17 3.10 8.06 -2.91 -0.02 3.07 16 34 H 0.19 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -69.80 313.29 3.03 -66.78 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 1.10 Total: 3.57 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 5.56 Total: 7.41 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -3.07 Total: -104.59 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -1.52 Total: -18.56 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.70 Total: 47.18 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.07 Total: -0.94 kcal Atomic # 35 Polarization: -0.16 SS G_CDS: -0.69 Total: -0.84 kcal Total: -69.80 3.03 -66.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843412422.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.268 kcal (2) G-P(sol) polarization free energy of solvation -69.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds