Wall clock time and date at job start Wed Apr 1 2020 05:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00278 * 2 1 4 4 H 1.48496 * 109.47261 * 270.00476 * 3 2 1 5 5 H 1.48510 * 109.46591 * 30.00424 * 3 2 1 6 6 H 1.48495 * 109.47186 * 149.99891 * 3 2 1 7 7 C 1.37876 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99929 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00493 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47703 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.47433 * 179.97438 * 10 9 7 12 12 O 1.42100 * 110.54061 * 68.38099 * 11 10 9 13 13 O 1.42098 * 110.54572 * 291.62579 * 11 10 9 14 14 N 1.65596 * 104.45000 * 179.97438 * 11 10 9 15 15 C 1.46509 * 120.00080 * 65.00298 * 14 11 10 16 16 C 1.50690 * 109.47300 * 164.99774 * 15 14 11 17 17 C 1.38233 * 119.60853 * 95.00063 * 16 15 14 18 18 C 1.38613 * 119.17625 * 179.97438 * 17 16 15 19 19 C 1.38752 * 118.40879 * 0.25567 * 18 17 16 20 20 Br 1.89107 * 120.42763 * 179.75035 * 19 18 17 21 21 C 1.38281 * 119.14439 * 359.51903 * 19 18 17 22 22 N 1.31858 * 119.60924 * 275.02486 * 16 15 14 23 23 H 0.97001 * 119.99478 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46620 * 59.99858 * 9 7 2 25 25 H 1.09003 * 109.47350 * 300.00724 * 9 7 2 26 26 H 1.09000 * 109.46706 * 59.99908 * 10 9 7 27 27 H 1.08999 * 109.47030 * 300.00160 * 10 9 7 28 28 H 0.97002 * 120.00495 * 245.00403 * 14 11 10 29 29 H 1.09001 * 109.46462 * 44.99618 * 15 14 11 30 30 H 1.08995 * 109.46501 * 285.00223 * 15 14 11 31 31 H 1.08002 * 120.41515 * 0.02562 * 17 16 15 32 32 H 1.08002 * 120.79267 * 179.97438 * 18 17 16 33 33 H 1.08007 * 119.62545 * 180.20793 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0010 11 16 5.8356 -2.6366 -0.0025 12 8 6.3352 -2.1459 1.2340 13 8 6.3333 -2.1467 -1.2400 14 7 6.2487 -4.2402 -0.0015 15 6 5.9114 -5.0843 -1.1505 16 6 6.6962 -6.3687 -1.0779 17 6 6.1229 -7.4878 -0.5036 18 6 6.8526 -8.6647 -0.4420 19 6 8.1406 -8.6706 -0.9582 20 35 9.1894 -10.2430 -0.8977 21 6 8.6455 -7.5132 -1.5218 22 7 7.9217 -6.4116 -1.5624 23 1 -0.4849 0.8401 0.0004 24 1 3.8752 -0.6805 0.8889 25 1 3.8746 -0.6800 -0.8911 26 1 3.6579 -3.1506 -0.8907 27 1 3.6586 -3.1502 0.8892 28 1 6.7141 -4.6208 0.7598 29 1 6.1593 -4.5586 -2.0726 30 1 4.8449 -5.3087 -1.1356 31 1 5.1186 -7.4460 -0.1086 32 1 6.4305 -9.5545 0.0013 33 1 9.6459 -7.5101 -1.9290 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867799092.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:52 Heat of formation + Delta-G solvation = -39.002918 kcal Electronic energy + Delta-G solvation = -19500.093175 eV Core-core repulsion = 16120.229491 eV Total energy + Delta-G solvation = -3379.863684 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.79100 -36.77944 -35.82360 -35.54342 -33.98000 -33.41575 -32.35419 -31.51115 -30.17207 -26.29635 -26.00703 -24.18845 -22.39839 -21.34417 -19.14784 -17.90607 -17.48627 -17.17616 -16.72027 -16.20236 -15.66803 -15.50282 -14.94877 -14.43092 -14.33626 -14.00873 -13.85646 -13.54167 -13.18754 -12.81947 -12.48107 -11.92467 -11.87122 -11.75419 -11.66493 -11.57526 -11.27761 -11.22088 -10.95476 -10.47531 -10.30594 -10.18937 -9.95707 -9.89189 -9.55167 -9.37014 -9.22683 -8.68191 -6.18723 -4.20193 0.22561 0.65008 0.69366 1.01029 2.85232 3.25708 3.28563 3.33243 3.37384 3.70262 4.09643 4.12092 4.24723 4.34312 4.38579 4.58089 4.64216 5.06052 5.12215 5.13186 5.18348 5.38648 5.42697 5.49162 5.52508 5.69796 5.98140 6.24250 6.78832 6.85970 6.93574 7.39322 7.52430 8.33821 8.81944 9.41006 10.93550 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.036324 B = 0.002077 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.662628 B =13476.286007 C =13915.041123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.520 4.520 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.582 4.582 11 S 2.591 3.409 12 O -0.964 6.964 13 O -0.961 6.961 14 N -1.120 6.120 15 C 0.164 3.836 16 C 0.136 3.864 17 C -0.149 4.149 18 C -0.046 4.046 19 C -0.147 4.147 20 Br -0.034 7.034 21 C 0.134 3.866 22 N -0.456 5.456 23 H 0.266 0.734 24 H 0.033 0.967 25 H 0.029 0.971 26 H 0.125 0.875 27 H 0.128 0.872 28 H 0.414 0.586 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.010 -23.988 -1.774 29.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.131 4.131 3 Si 0.696 3.304 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.559 4.559 8 H 0.096 0.904 9 C -0.047 4.047 10 C -0.716 4.716 11 S 2.688 3.312 12 O -0.954 6.954 13 O -0.951 6.951 14 N -0.877 5.877 15 C 0.037 3.963 16 C -0.003 4.003 17 C -0.171 4.171 18 C -0.074 4.074 19 C -0.229 4.229 20 Br 0.050 6.950 21 C -0.025 4.025 22 N -0.166 5.166 23 H 0.076 0.924 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.144 0.856 27 H 0.146 0.854 28 H 0.247 0.753 29 H 0.121 0.879 30 H 0.107 0.893 31 H 0.169 0.831 32 H 0.165 0.835 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 18.142 -22.890 -2.303 29.298 hybrid contribution -0.645 -0.240 0.700 0.982 sum 17.497 -23.130 -1.603 29.047 Atomic orbital electron populations 1.69882 1.06217 1.27286 1.49947 1.24990 0.94828 0.99204 0.94113 0.86922 0.80700 0.83660 0.79155 1.19644 1.20777 1.18593 1.20837 0.87786 0.94895 1.52358 0.90403 1.19417 0.99907 0.87420 0.97969 1.30302 1.20954 1.09324 1.10974 1.05653 0.79104 0.72162 0.74275 1.93569 1.79186 1.77418 1.45232 1.93561 1.78356 1.77667 1.45499 1.55746 1.75174 1.29953 1.26815 1.20182 0.97476 0.87791 0.90883 1.21388 0.90877 0.95198 0.92866 1.22163 1.02196 0.92512 1.00194 1.21625 0.91774 0.99074 0.94903 1.23052 0.97366 0.95051 1.07426 1.96780 1.68934 1.31392 1.97857 1.22918 0.99707 0.86190 0.93710 1.67715 1.06165 1.26978 1.15694 0.92363 0.94888 0.95266 0.85626 0.85366 0.75298 0.87894 0.89323 0.83055 0.83461 0.81595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.96 55.43 0.77 -25.90 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 21.21 27.47 -169.99 -4.67 16.54 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.52 -14.14 9.66 -34.44 -0.33 -14.47 16 8 H 0.08 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.01 -0.18 4.05 -27.89 -0.11 -0.29 16 10 C -0.58 -9.89 6.01 37.15 0.22 -9.67 16 11 S 2.59 41.79 5.46 -107.50 -0.59 41.20 16 12 O -0.96 -18.43 18.08 -57.54 -1.04 -19.47 16 13 O -0.96 -18.36 17.50 -57.54 -1.01 -19.37 16 14 N -1.12 -13.12 5.88 -11.66 -0.07 -13.19 16 15 C 0.16 1.65 6.44 -5.19 -0.03 1.62 16 16 C 0.14 1.31 6.18 -82.59 -0.51 0.80 16 17 C -0.15 -1.08 9.72 -39.44 -0.38 -1.47 16 18 C -0.05 -0.32 9.94 -39.25 -0.39 -0.71 16 19 C -0.15 -1.14 6.25 -39.38 -0.25 -1.39 16 20 Br -0.03 -0.23 33.74 -68.01 -2.29 -2.53 16 21 C 0.13 1.19 10.95 -17.52 -0.19 1.00 16 22 N -0.46 -5.00 10.27 -9.45 -0.10 -5.09 16 23 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 25 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 26 H 0.13 1.86 8.14 -51.92 -0.42 1.43 16 27 H 0.13 1.95 8.14 -51.92 -0.42 1.52 16 28 H 0.41 4.25 8.61 -34.47 -0.30 3.95 16 29 H 0.10 1.14 7.70 -51.93 -0.40 0.74 16 30 H 0.09 0.64 8.04 -51.93 -0.42 0.22 16 31 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.17 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 323.63 15.07 4.88 4.88 Total: -1.00 -35.33 323.63 -9.77 -45.10 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -3.58 Total: 0.48 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -2.07 Total: -22.65 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.61 Total: -44.19 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -2.05 Total: -38.84 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Atomic # 16 Polarization: 41.79 SS G_CDS: -0.59 Total: 41.20 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -2.29 Total: -2.53 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.33 -9.77 -45.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867799092.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.099 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds