Wall clock time and date at job start Wed Apr 1 2020 05:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00278 * 2 1 4 4 H 1.48496 * 109.47261 * 270.00476 * 3 2 1 5 5 H 1.48510 * 109.46591 * 30.00424 * 3 2 1 6 6 H 1.48495 * 109.47186 * 149.99891 * 3 2 1 7 7 C 1.37876 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99929 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00493 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47703 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.47433 * 179.97438 * 10 9 7 12 12 O 1.42100 * 110.54061 * 68.38099 * 11 10 9 13 13 O 1.42098 * 110.54572 * 291.62579 * 11 10 9 14 14 N 1.65596 * 104.45000 * 179.97438 * 11 10 9 15 15 C 1.46509 * 120.00080 * 65.00298 * 14 11 10 16 16 C 1.50690 * 109.47300 * 164.99774 * 15 14 11 17 17 C 1.38233 * 119.60853 * 95.00063 * 16 15 14 18 18 C 1.38613 * 119.17625 * 179.97438 * 17 16 15 19 19 C 1.38752 * 118.40879 * 0.25567 * 18 17 16 20 20 Br 1.89107 * 120.42763 * 179.75035 * 19 18 17 21 21 C 1.38281 * 119.14439 * 359.51903 * 19 18 17 22 22 N 1.31858 * 119.60924 * 275.02486 * 16 15 14 23 23 H 0.97001 * 119.99478 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46620 * 59.99858 * 9 7 2 25 25 H 1.09003 * 109.47350 * 300.00724 * 9 7 2 26 26 H 1.09000 * 109.46706 * 59.99908 * 10 9 7 27 27 H 1.08999 * 109.47030 * 300.00160 * 10 9 7 28 28 H 0.97002 * 120.00495 * 245.00403 * 14 11 10 29 29 H 1.09001 * 109.46462 * 44.99618 * 15 14 11 30 30 H 1.08995 * 109.46501 * 285.00223 * 15 14 11 31 31 H 1.08002 * 120.41515 * 0.02562 * 17 16 15 32 32 H 1.08002 * 120.79267 * 179.97438 * 18 17 16 33 33 H 1.08007 * 119.62545 * 180.20793 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0010 11 16 5.8356 -2.6366 -0.0025 12 8 6.3352 -2.1459 1.2340 13 8 6.3333 -2.1467 -1.2400 14 7 6.2487 -4.2402 -0.0015 15 6 5.9114 -5.0843 -1.1505 16 6 6.6962 -6.3687 -1.0779 17 6 6.1229 -7.4878 -0.5036 18 6 6.8526 -8.6647 -0.4420 19 6 8.1406 -8.6706 -0.9582 20 35 9.1894 -10.2430 -0.8977 21 6 8.6455 -7.5132 -1.5218 22 7 7.9217 -6.4116 -1.5624 23 1 -0.4849 0.8401 0.0004 24 1 3.8752 -0.6805 0.8889 25 1 3.8746 -0.6800 -0.8911 26 1 3.6579 -3.1506 -0.8907 27 1 3.6586 -3.1502 0.8892 28 1 6.7141 -4.6208 0.7598 29 1 6.1593 -4.5586 -2.0726 30 1 4.8449 -5.3087 -1.1356 31 1 5.1186 -7.4460 -0.1086 32 1 6.4305 -9.5545 0.0013 33 1 9.6459 -7.5101 -1.9290 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867799092.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:52 Heat of formation + Delta-G solvation = -66.102227 kcal Electronic energy + Delta-G solvation = -19501.268289 eV Core-core repulsion = 16120.229491 eV Total energy + Delta-G solvation = -3381.038798 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.40878 -38.17729 -37.04593 -36.59666 -35.85710 -34.05090 -33.43501 -32.97821 -30.81780 -27.84910 -27.04960 -24.77102 -23.19372 -23.02129 -20.38340 -19.38887 -18.73529 -18.01968 -17.80715 -17.05293 -16.99735 -16.36886 -16.34034 -15.96729 -15.27735 -15.09807 -14.79835 -14.65420 -14.39274 -13.92769 -13.75977 -13.34140 -13.21091 -13.10536 -13.04063 -12.90274 -12.69311 -12.30601 -12.20095 -11.92422 -11.68343 -11.50958 -11.29574 -10.86861 -10.81483 -10.58353 -10.45868 -9.95295 -8.33832 -6.38684 -0.76767 -0.26660 0.11426 0.44425 1.33998 1.36530 1.45819 1.79532 2.31855 2.57151 2.78395 3.00702 3.08084 3.28539 3.55549 3.72330 3.85008 3.91004 4.03590 4.14439 4.40122 4.50054 4.62662 4.63212 4.76164 4.82945 4.93331 5.12289 5.17081 5.41321 5.50851 6.00575 6.19892 6.67919 6.76935 7.25727 8.81405 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.036324 B = 0.002077 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.662628 B =13476.286007 C =13915.041123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.013 3.987 3 Si 0.922 3.078 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.250 1.250 7 C -0.523 4.523 8 H 0.054 0.946 9 C -0.020 4.020 10 C -0.583 4.583 11 S 2.622 3.378 12 O -0.994 6.994 13 O -0.992 6.992 14 N -1.104 6.104 15 C 0.154 3.846 16 C 0.118 3.882 17 C -0.140 4.140 18 C -0.045 4.045 19 C -0.149 4.149 20 Br -0.026 7.026 21 C 0.121 3.879 22 N -0.490 5.490 23 H 0.269 0.731 24 H 0.031 0.969 25 H 0.031 0.969 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.423 0.577 29 H 0.089 0.911 30 H 0.123 0.877 31 H 0.180 0.820 32 H 0.172 0.828 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.828 -25.365 -1.473 31.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.185 4.185 3 Si 0.745 3.255 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.173 1.173 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.060 4.060 10 C -0.715 4.715 11 S 2.719 3.281 12 O -0.985 6.985 13 O -0.981 6.981 14 N -0.865 5.865 15 C 0.028 3.972 16 C -0.021 4.021 17 C -0.161 4.161 18 C -0.072 4.072 19 C -0.231 4.231 20 Br 0.059 6.941 21 C -0.038 4.038 22 N -0.200 5.200 23 H 0.078 0.922 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.166 0.834 27 H 0.166 0.834 28 H 0.259 0.741 29 H 0.107 0.893 30 H 0.141 0.859 31 H 0.197 0.803 32 H 0.190 0.810 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 18.971 -24.272 -1.998 30.871 hybrid contribution -0.877 0.003 0.589 1.056 sum 18.093 -24.270 -1.410 30.305 Atomic orbital electron populations 1.70005 1.07820 1.28265 1.51911 1.25845 0.95592 1.02908 0.94204 0.86067 0.79947 0.79699 0.79774 1.18677 1.20197 1.17334 1.21186 0.90194 0.93914 1.50877 0.92743 1.19397 0.97220 0.91448 0.97895 1.30251 1.22004 1.06044 1.13224 1.04462 0.78123 0.72760 0.72793 1.93522 1.79557 1.78922 1.46459 1.93525 1.78699 1.79107 1.46813 1.55257 1.74806 1.28577 1.27844 1.20468 0.99659 0.87705 0.89377 1.21384 0.90828 0.95664 0.94191 1.22423 1.03198 0.91601 0.98861 1.21973 0.91257 0.99859 0.94159 1.23165 0.97936 0.94988 1.06983 1.96792 1.68917 1.30631 1.97803 1.23093 1.00140 0.86285 0.94284 1.67638 1.07215 1.28269 1.16873 0.92226 0.95082 0.95055 0.83359 0.83428 0.74119 0.89288 0.85904 0.80294 0.81014 0.80745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.77 13.96 21.45 0.30 -56.47 16 2 C 0.01 0.74 5.47 84.65 0.46 1.20 16 3 Si 0.92 43.21 27.47 68.60 1.88 45.10 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 7 C -0.52 -28.41 9.66 25.60 0.25 -28.16 16 8 H 0.05 3.12 7.99 -2.91 -0.02 3.10 16 9 C -0.02 -0.91 4.05 29.85 0.12 -0.79 16 10 C -0.58 -18.68 6.01 71.98 0.43 -18.24 16 11 S 2.62 80.56 5.46 -56.49 -0.31 80.25 16 12 O -0.99 -36.78 18.08 -127.65 -2.31 -39.09 16 13 O -0.99 -36.92 17.50 -127.65 -2.23 -39.15 16 14 N -1.10 -23.62 5.88 -190.79 -1.12 -24.74 16 15 C 0.15 2.77 6.44 85.63 0.55 3.32 16 16 C 0.12 2.05 6.18 42.55 0.26 2.31 16 17 C -0.14 -1.60 9.72 22.36 0.22 -1.38 16 18 C -0.05 -0.49 9.94 22.48 0.22 -0.27 16 19 C -0.15 -2.03 6.25 22.40 0.14 -1.89 16 20 Br -0.03 -0.31 33.74 -20.37 -0.69 -1.00 16 21 C 0.12 2.03 10.95 84.70 0.93 2.95 16 22 N -0.49 -10.26 10.27 -183.81 -1.89 -12.15 16 23 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 24 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 25 H 0.03 1.38 7.57 -2.39 -0.02 1.36 16 26 H 0.15 4.02 8.14 -2.39 -0.02 4.00 16 27 H 0.15 4.13 8.14 -2.39 -0.02 4.11 16 28 H 0.42 7.80 8.61 -96.74 -0.83 6.97 16 29 H 0.09 1.87 7.70 -2.39 -0.02 1.86 16 30 H 0.12 1.34 8.04 -2.39 -0.02 1.32 16 31 H 0.18 0.98 8.06 -2.91 -0.02 0.95 16 32 H 0.17 0.97 8.06 -2.91 -0.02 0.94 16 33 H 0.18 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -76.44 323.63 -2.52 -78.96 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.26 Total: 9.23 kcal Atomic # 6 Polarization: -44.54 SS G_CDS: 3.59 Total: -40.95 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -2.71 Total: -93.36 kcal Atomic # 8 Polarization: -73.69 SS G_CDS: -4.54 Total: -78.24 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.88 Total: 45.10 kcal Atomic # 16 Polarization: 80.56 SS G_CDS: -0.31 Total: 80.25 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -0.69 Total: -1.00 kcal Total: -76.44 -2.52 -78.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867799092.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.862 kcal (2) G-P(sol) polarization free energy of solvation -76.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds