Wall clock time and date at job start Wed Apr 1 2020 05:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47635 * 2 1 4 4 H 1.08998 * 109.46835 * 303.40031 * 3 2 1 5 5 C 1.50700 * 109.47310 * 183.39983 * 3 2 1 6 6 H 1.07997 * 120.00277 * 240.00200 * 5 3 2 7 7 C 1.37882 * 119.99818 * 59.99978 * 5 3 2 8 8 N 1.31507 * 120.00011 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99570 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47453 * 60.00027 * 9 7 5 11 11 H 1.48508 * 109.46797 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47451 * 299.99720 * 9 7 5 13 13 N 1.46503 * 109.46686 * 63.40242 * 3 2 1 14 14 S 1.65605 * 119.99690 * 215.42929 * 13 3 2 15 15 O 1.42094 * 106.40321 * 179.11184 * 14 13 3 16 16 O 1.42105 * 106.40405 * 312.03805 * 14 13 3 17 17 C 1.76197 * 107.21825 * 65.57364 * 14 13 3 18 18 C 1.38208 * 119.61554 * 273.58855 * 17 14 13 19 19 C 1.38654 * 119.18424 * 179.72723 * 18 17 14 20 20 C 1.38627 * 118.43366 * 0.53452 * 19 18 17 21 21 C 1.38304 * 119.15411 * 359.72961 * 20 19 18 22 22 Br 1.89103 * 119.62962 * 179.97438 * 21 20 19 23 23 N 1.31866 * 119.61096 * 93.85841 * 17 14 13 24 24 H 1.08994 * 109.47855 * 174.91372 * 1 2 3 25 25 H 1.09004 * 109.46839 * 54.91464 * 1 2 3 26 26 H 1.09000 * 109.47495 * 294.92236 * 1 2 3 27 27 H 1.09006 * 109.47042 * 120.00077 * 2 1 3 28 28 H 1.09006 * 109.47216 * 239.99791 * 2 1 3 29 29 H 0.96999 * 119.99737 * 179.97438 * 8 7 5 30 30 H 0.96991 * 120.00535 * 35.43369 * 13 3 2 31 31 H 1.08000 * 120.40332 * 0.02562 * 18 17 14 32 32 H 1.08009 * 120.78184 * 180.26134 * 19 18 17 33 33 H 1.08004 * 120.42130 * 179.74659 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6279 1.9735 -0.8579 5 6 3.5447 1.4432 -0.0843 6 1 4.1295 1.8949 0.7033 7 6 4.1748 0.8670 -1.1669 8 7 3.4628 0.3173 -2.1262 9 14 6.0399 0.8674 -1.2709 10 1 6.6010 0.1434 -0.1022 11 1 6.4659 0.1923 -2.5232 12 1 6.5355 2.2673 -1.2706 13 7 1.6198 2.1089 1.2351 14 16 1.2132 3.7141 1.2126 15 8 0.8363 4.0512 2.5405 16 8 2.2501 4.3809 0.5059 17 6 -0.2398 3.8704 0.2283 18 6 -0.1246 4.0148 -1.1414 19 6 -1.2740 4.1313 -1.9080 20 6 -2.5017 4.1093 -1.2645 21 6 -2.5391 3.9672 0.1107 22 35 -4.2064 3.9362 1.0024 23 7 -1.4242 3.8534 0.8077 24 1 -0.3634 -1.0235 -0.0911 25 1 -0.3633 0.5907 -0.8410 26 1 -0.3634 0.4330 0.9319 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.9061 -0.0877 -2.8880 30 1 1.5798 1.6101 2.0660 31 1 0.8486 4.0319 -1.6093 32 1 -1.2142 4.2411 -2.9808 33 1 -3.4173 4.2017 -1.8299 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872473413.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:53 Heat of formation + Delta-G solvation = -39.868220 kcal Electronic energy + Delta-G solvation = -21054.447711 eV Core-core repulsion = 17674.546506 eV Total energy + Delta-G solvation = -3379.901206 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.26654 -36.74238 -36.01807 -35.31193 -32.96782 -32.63366 -32.24378 -30.70835 -29.95413 -26.70274 -24.36855 -23.44192 -23.10547 -20.27554 -19.35095 -17.88001 -17.06604 -16.86286 -16.46729 -16.06756 -15.35830 -14.72007 -14.62500 -14.44757 -13.81491 -13.46896 -13.16708 -13.06078 -12.53717 -11.96417 -11.68750 -11.55259 -11.44577 -11.32259 -11.24596 -11.16234 -11.01786 -10.80946 -10.67756 -10.31312 -10.24900 -9.93146 -9.90495 -9.86076 -9.67423 -9.28496 -8.49235 -8.34021 -6.13661 -4.20241 0.35813 0.83846 0.92480 1.14690 3.13246 3.30235 3.33471 3.38924 3.65646 4.10486 4.25642 4.38902 4.62758 4.66617 4.92099 5.02743 5.15917 5.32001 5.58284 5.76362 6.00251 6.08271 6.13242 6.21579 6.40476 6.71188 6.82769 7.00966 7.25531 7.47658 7.57106 7.81076 8.00593 8.15796 8.83154 9.46388 10.90831 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.020833 B = 0.003798 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.687457 B = 7370.947881 C = 7655.144892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.279 3.721 4 H 0.039 0.961 5 C -0.521 4.521 6 H 0.066 0.934 7 C 0.065 3.935 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.274 1.274 13 N -1.093 6.093 14 S 2.695 3.305 15 O -0.958 6.958 16 O -0.934 6.934 17 C -0.428 4.428 18 C -0.063 4.063 19 C -0.083 4.083 20 C -0.095 4.095 21 C 0.097 3.903 22 Br -0.004 7.004 23 N -0.366 5.366 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.107 0.893 29 H 0.264 0.736 30 H 0.411 0.589 31 H 0.167 0.833 32 H 0.155 0.845 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.007 5.184 -0.012 15.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.175 3.825 4 H 0.057 0.943 5 C -0.561 4.561 6 H 0.084 0.916 7 C -0.137 4.137 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.855 5.855 14 S 2.776 3.224 15 O -0.948 6.948 16 O -0.923 6.923 17 C -0.646 4.646 18 C -0.083 4.083 19 C -0.110 4.110 20 C -0.117 4.117 21 C -0.124 4.124 22 Br 0.079 6.921 23 N -0.077 5.077 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.125 0.875 29 H 0.074 0.926 30 H 0.245 0.755 31 H 0.184 0.816 32 H 0.173 0.827 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.240 5.783 1.250 16.348 hybrid contribution 0.638 -0.465 -1.443 1.645 sum -14.603 5.318 -0.193 15.542 Atomic orbital electron populations 1.21837 0.99099 0.99702 0.99934 1.21891 0.91755 0.99343 1.03637 1.18627 0.94718 0.90094 0.79072 0.94327 1.21477 0.90875 1.37163 1.06574 0.91597 1.24887 0.98700 0.94818 0.95309 1.69819 1.35398 1.38176 1.09870 0.86554 0.85088 0.78541 0.77296 1.20159 1.21292 1.19916 1.55523 1.81357 1.29558 1.19088 1.02367 0.72925 0.73992 0.73151 1.93544 1.83680 1.82885 1.34703 1.93657 1.50619 1.73041 1.74995 1.34346 1.14196 1.09130 1.06927 1.22329 1.01871 0.90807 0.93342 1.21798 0.91405 0.96343 1.01452 1.22222 1.00088 0.95981 0.93416 1.23027 0.93337 1.04212 0.91792 1.96772 1.17744 1.97513 1.80027 1.67597 0.96281 1.05301 1.38545 0.94297 0.94260 0.94239 0.93673 0.87507 0.92599 0.75522 0.81581 0.82689 0.83201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.72 37.16 0.36 -2.31 16 2 C -0.13 -2.66 5.37 -26.73 -0.14 -2.80 16 3 C 0.28 6.20 2.17 -69.08 -0.15 6.05 16 4 H 0.04 0.89 6.91 -51.93 -0.36 0.53 16 5 C -0.52 -13.30 8.84 -34.44 -0.30 -13.61 16 6 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 8 N -0.89 -23.20 11.30 55.43 0.63 -22.58 16 9 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 N -1.09 -21.29 4.93 -5.88 -0.03 -21.32 16 14 S 2.69 52.41 5.70 -107.50 -0.61 51.79 16 15 O -0.96 -20.05 17.82 -57.17 -1.02 -21.07 16 16 O -0.93 -20.40 17.10 -57.17 -0.98 -21.38 16 17 C -0.43 -7.44 6.77 -17.55 -0.12 -7.56 16 18 C -0.06 -0.95 8.76 -39.44 -0.35 -1.29 16 19 C -0.08 -0.97 10.17 -39.28 -0.40 -1.37 16 20 C -0.10 -1.09 9.83 -39.41 -0.39 -1.48 16 21 C 0.10 1.39 7.16 -17.47 -0.13 1.26 16 22 Br 0.00 -0.05 33.87 -68.01 -2.30 -2.36 16 23 N -0.37 -6.31 10.04 -10.85 -0.11 -6.41 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.67 7.85 -51.93 -0.41 0.26 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.11 2.52 5.99 -51.93 -0.31 2.21 16 29 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 30 H 0.41 7.13 8.84 -34.47 -0.30 6.83 16 31 H 0.17 2.49 7.53 -52.49 -0.40 2.09 16 32 H 0.16 1.25 8.06 -52.48 -0.42 0.83 16 33 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 319.49 15.07 4.81 4.81 Total: -1.00 -30.56 319.49 -9.77 -40.34 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -3.44 Total: 4.25 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -1.71 Total: -21.52 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.49 Total: -50.31 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -2.00 Total: -42.45 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 52.41 SS G_CDS: -0.61 Total: 51.79 kcal Atomic # 35 Polarization: -0.05 SS G_CDS: -2.30 Total: -2.36 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.56 -9.77 -40.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872473413.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.470 kcal (2) G-P(sol) polarization free energy of solvation -30.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds