Wall clock time and date at job start Wed Apr 1 2020 05:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47635 * 2 1 4 4 H 1.08998 * 109.46835 * 303.40031 * 3 2 1 5 5 C 1.50700 * 109.47310 * 183.39983 * 3 2 1 6 6 H 1.07997 * 120.00277 * 240.00200 * 5 3 2 7 7 C 1.37882 * 119.99818 * 59.99978 * 5 3 2 8 8 N 1.31507 * 120.00011 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99570 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47453 * 60.00027 * 9 7 5 11 11 H 1.48508 * 109.46797 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47451 * 299.99720 * 9 7 5 13 13 N 1.46503 * 109.46686 * 63.40242 * 3 2 1 14 14 S 1.65605 * 119.99690 * 215.42929 * 13 3 2 15 15 O 1.42094 * 106.40321 * 179.11184 * 14 13 3 16 16 O 1.42105 * 106.40405 * 312.03805 * 14 13 3 17 17 C 1.76197 * 107.21825 * 65.57364 * 14 13 3 18 18 C 1.38208 * 119.61554 * 273.58855 * 17 14 13 19 19 C 1.38654 * 119.18424 * 179.72723 * 18 17 14 20 20 C 1.38627 * 118.43366 * 0.53452 * 19 18 17 21 21 C 1.38304 * 119.15411 * 359.72961 * 20 19 18 22 22 Br 1.89103 * 119.62962 * 179.97438 * 21 20 19 23 23 N 1.31866 * 119.61096 * 93.85841 * 17 14 13 24 24 H 1.08994 * 109.47855 * 174.91372 * 1 2 3 25 25 H 1.09004 * 109.46839 * 54.91464 * 1 2 3 26 26 H 1.09000 * 109.47495 * 294.92236 * 1 2 3 27 27 H 1.09006 * 109.47042 * 120.00077 * 2 1 3 28 28 H 1.09006 * 109.47216 * 239.99791 * 2 1 3 29 29 H 0.96999 * 119.99737 * 179.97438 * 8 7 5 30 30 H 0.96991 * 120.00535 * 35.43369 * 13 3 2 31 31 H 1.08000 * 120.40332 * 0.02562 * 18 17 14 32 32 H 1.08009 * 120.78184 * 180.26134 * 19 18 17 33 33 H 1.08004 * 120.42130 * 179.74659 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6279 1.9735 -0.8579 5 6 3.5447 1.4432 -0.0843 6 1 4.1295 1.8949 0.7033 7 6 4.1748 0.8670 -1.1669 8 7 3.4628 0.3173 -2.1262 9 14 6.0399 0.8674 -1.2709 10 1 6.6010 0.1434 -0.1022 11 1 6.4659 0.1923 -2.5232 12 1 6.5355 2.2673 -1.2706 13 7 1.6198 2.1089 1.2351 14 16 1.2132 3.7141 1.2126 15 8 0.8363 4.0512 2.5405 16 8 2.2501 4.3809 0.5059 17 6 -0.2398 3.8704 0.2283 18 6 -0.1246 4.0148 -1.1414 19 6 -1.2740 4.1313 -1.9080 20 6 -2.5017 4.1093 -1.2645 21 6 -2.5391 3.9672 0.1107 22 35 -4.2064 3.9362 1.0024 23 7 -1.4242 3.8534 0.8077 24 1 -0.3634 -1.0235 -0.0911 25 1 -0.3633 0.5907 -0.8410 26 1 -0.3634 0.4330 0.9319 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.9061 -0.0877 -2.8880 30 1 1.5798 1.6101 2.0660 31 1 0.8486 4.0319 -1.6093 32 1 -1.2142 4.2411 -2.9808 33 1 -3.4173 4.2017 -1.8299 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872473413.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:52 Heat of formation + Delta-G solvation = -62.026986 kcal Electronic energy + Delta-G solvation = -21055.408588 eV Core-core repulsion = 17674.546506 eV Total energy + Delta-G solvation = -3380.862082 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.36701 -38.37261 -37.71571 -36.94355 -34.15162 -34.02602 -33.69518 -32.29089 -31.00559 -28.53165 -25.50275 -24.89218 -24.49387 -21.95461 -20.79236 -19.28412 -18.76689 -18.15487 -17.99859 -17.22344 -17.05041 -16.32938 -15.82441 -15.69672 -15.44672 -14.85685 -14.71643 -14.45646 -13.66572 -13.60064 -13.35821 -13.22027 -13.09986 -13.02071 -12.75979 -12.59863 -12.51333 -12.32519 -12.07381 -11.69983 -11.65177 -11.61073 -11.48339 -11.26739 -10.89177 -10.44440 -10.36064 -10.05651 -8.08407 -6.20128 -0.80461 -0.56288 -0.16976 0.11448 1.46904 1.48553 1.55422 1.92454 2.24331 2.47921 2.69870 3.03256 3.18985 3.56257 3.72489 3.89789 3.92916 4.06099 4.41354 4.55456 4.61102 4.65188 4.76324 4.83202 5.09457 5.16584 5.29867 5.36066 5.69276 5.78574 6.00424 6.11559 6.27090 6.40064 6.84999 7.48069 8.93922 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.020833 B = 0.003798 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.687457 B = 7370.947881 C = 7655.144892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.284 3.716 4 H 0.032 0.968 5 C -0.543 4.543 6 H 0.051 0.949 7 C 0.028 3.972 8 N -0.907 5.907 9 Si 0.944 3.056 10 H -0.273 1.273 11 H -0.279 1.279 12 H -0.280 1.280 13 N -1.092 6.092 14 S 2.708 3.292 15 O -0.980 6.980 16 O -0.968 6.968 17 C -0.446 4.446 18 C -0.076 4.076 19 C -0.070 4.070 20 C -0.076 4.076 21 C 0.080 3.920 22 Br 0.014 6.986 23 N -0.396 5.396 24 H 0.056 0.944 25 H 0.038 0.962 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.265 0.735 30 H 0.418 0.582 31 H 0.160 0.840 32 H 0.199 0.801 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.919 5.140 -1.281 17.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.179 3.821 4 H 0.050 0.950 5 C -0.582 4.582 6 H 0.070 0.930 7 C -0.173 4.173 8 N -0.546 5.546 9 Si 0.770 3.230 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.206 1.206 13 N -0.855 5.855 14 S 2.794 3.206 15 O -0.970 6.970 16 O -0.958 6.958 17 C -0.667 4.667 18 C -0.098 4.098 19 C -0.097 4.097 20 C -0.097 4.097 21 C -0.141 4.141 22 Br 0.098 6.902 23 N -0.108 5.108 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.254 0.746 31 H 0.177 0.823 32 H 0.216 0.784 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -17.102 5.725 0.025 18.035 hybrid contribution 1.075 -0.401 -1.075 1.572 sum -16.027 5.324 -1.050 16.921 Atomic orbital electron populations 1.21718 0.96563 1.00918 1.00356 1.21726 0.93977 0.97962 1.02398 1.18419 0.93003 0.90967 0.79730 0.95030 1.21770 0.92849 1.37183 1.06397 0.93036 1.25441 1.01783 0.94780 0.95258 1.69898 1.36322 1.38393 1.10013 0.85837 0.81530 0.78071 0.77577 1.19800 1.20429 1.20576 1.55310 1.81967 1.29435 1.18780 1.01499 0.73071 0.73367 0.72627 1.93503 1.84176 1.83077 1.36267 1.93606 1.52982 1.73725 1.75457 1.33467 1.13360 1.12486 1.07407 1.22450 1.03175 0.91361 0.92792 1.22301 0.90035 0.94073 1.03248 1.22753 1.01715 0.92867 0.92357 1.23541 0.93177 1.04083 0.93344 1.96787 1.15776 1.97454 1.80184 1.67493 0.96885 1.06716 1.39720 0.92528 0.94306 0.93415 0.93671 0.89905 0.92520 0.74641 0.82281 0.78383 0.78784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 9.72 71.98 0.70 -4.08 16 2 C -0.12 -5.06 5.37 30.59 0.16 -4.89 16 3 C 0.28 12.79 2.17 44.24 0.10 12.88 16 4 H 0.03 1.48 6.91 -2.39 -0.02 1.46 16 5 C -0.54 -28.21 8.84 25.60 0.23 -27.99 16 6 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 7 C 0.03 1.44 5.30 84.66 0.45 1.89 16 8 N -0.91 -47.21 11.30 21.45 0.24 -46.96 16 9 Si 0.94 42.07 29.54 68.60 2.03 44.10 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 N -1.09 -43.44 4.93 -172.52 -0.85 -44.29 16 14 S 2.71 108.17 5.70 -56.49 -0.32 107.85 16 15 O -0.98 -42.10 17.82 -128.00 -2.28 -44.38 16 16 O -0.97 -43.91 17.10 -128.00 -2.19 -46.10 16 17 C -0.45 -15.39 6.77 84.68 0.57 -14.81 16 18 C -0.08 -2.22 8.76 22.36 0.20 -2.03 16 19 C -0.07 -1.39 10.17 22.46 0.23 -1.16 16 20 C -0.08 -1.43 9.83 22.38 0.22 -1.21 16 21 C 0.08 2.10 7.16 84.69 0.61 2.71 16 22 Br 0.01 0.31 33.87 -20.37 -0.69 -0.38 16 23 N -0.40 -13.26 10.04 -188.23 -1.89 -15.15 16 24 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.04 1.32 8.14 -2.38 -0.02 1.31 16 26 H 0.05 1.56 7.85 -2.39 -0.02 1.54 16 27 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.08 3.91 5.99 -2.38 -0.01 3.90 16 29 H 0.27 13.23 8.31 -92.71 -0.77 12.46 16 30 H 0.42 14.85 8.84 -96.76 -0.86 14.00 16 31 H 0.16 4.79 7.53 -2.91 -0.02 4.77 16 32 H 0.20 2.19 8.06 -2.91 -0.02 2.16 16 33 H 0.20 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -66.53 319.49 -2.20 -68.73 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.30 Total: 15.29 kcal Atomic # 6 Polarization: -42.15 SS G_CDS: 3.46 Total: -38.69 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -2.50 Total: -106.40 kcal Atomic # 8 Polarization: -86.01 SS G_CDS: -4.47 Total: -90.48 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 108.17 SS G_CDS: -0.32 Total: 107.85 kcal Atomic # 35 Polarization: 0.31 SS G_CDS: -0.69 Total: -0.38 kcal Total: -66.53 -2.20 -68.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872473413.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.703 kcal (2) G-P(sol) polarization free energy of solvation -66.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds