Wall clock time and date at job start Wed Apr 1 2020 05:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 119.99915 * 2 1 4 4 C 1.50696 * 109.47392 * 270.00243 * 3 2 1 5 5 H 1.08002 * 119.99988 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99780 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00365 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99665 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46956 * 90.00242 * 8 6 4 10 10 H 1.48496 * 109.47237 * 209.99674 * 8 6 4 11 11 H 1.48499 * 109.47282 * 330.00327 * 8 6 4 12 12 C 1.34781 * 120.00156 * 180.02562 * 2 1 3 13 13 O 1.21356 * 119.99965 * 174.37797 * 12 2 1 14 14 C 1.49340 * 119.99988 * 354.09339 * 12 2 1 15 15 O 1.21384 * 119.99859 * 359.70664 * 14 12 2 16 16 N 1.34775 * 120.00208 * 179.70083 * 14 12 2 17 17 C 1.39820 * 119.99901 * 174.85517 * 16 14 12 18 18 C 1.38879 * 120.07548 * 33.50284 * 17 16 14 19 19 C 1.38225 * 119.96225 * 179.72053 * 18 17 16 20 20 Cl 1.73600 * 119.94870 * 180.29975 * 19 18 17 21 21 C 1.38398 * 120.10135 * 0.55438 * 19 18 17 22 22 C 1.38366 * 120.14280 * 359.72102 * 21 19 18 23 23 Cl 1.73597 * 119.97796 * 180.02562 * 22 21 19 24 24 C 1.38406 * 120.04182 * 0.02562 * 22 21 19 25 25 F 1.35094 * 120.05196 * 179.97438 * 24 22 21 26 26 H 1.08999 * 109.46995 * 264.05318 * 1 2 3 27 27 H 1.08998 * 109.47034 * 24.05757 * 1 2 3 28 28 H 1.09001 * 109.46785 * 144.05788 * 1 2 3 29 29 H 1.08999 * 109.46813 * 30.00200 * 3 2 1 30 30 H 1.09000 * 109.47096 * 149.99851 * 3 2 1 31 31 H 0.97004 * 119.99954 * 180.02562 * 7 6 4 32 32 H 0.96998 * 119.99800 * 354.86504 * 16 14 12 33 33 H 1.08008 * 120.01787 * 359.97438 * 18 17 16 34 34 H 1.08002 * 119.92740 * 179.74562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0981 1.0959 -2.2417 6 6 3.1269 2.8776 -1.6726 7 7 3.5550 3.6171 -0.6730 8 14 3.4388 3.4165 -3.4338 9 1 2.3092 4.2598 -3.9008 10 1 4.6993 4.1991 -3.4961 11 1 3.5557 2.2193 -4.3045 12 6 2.1390 -1.1672 -0.0005 13 8 3.3481 -1.1697 -0.1035 14 6 1.3982 -2.4572 0.1320 15 8 0.1897 -2.4542 0.2455 16 7 2.0715 -3.6247 0.1254 17 6 1.3923 -4.8247 0.3570 18 6 0.0820 -4.9777 -0.0771 19 6 -0.5853 -6.1671 0.1479 20 17 -2.2205 -6.3608 -0.4017 21 6 0.0465 -7.2020 0.8154 22 6 1.3499 -7.0521 1.2547 23 17 2.1385 -8.3531 2.0909 24 6 2.0255 -5.8656 1.0280 25 9 3.2979 -5.7188 1.4573 26 1 -0.3633 -0.1065 1.0221 27 1 -0.3633 0.9384 -0.4189 28 1 -0.3633 -0.8320 -0.6032 29 1 1.6084 2.0283 0.5139 30 1 3.1499 1.1384 0.5139 31 1 4.0319 4.4431 -0.8502 32 1 3.0273 -3.6324 -0.0398 33 1 -0.4139 -4.1693 -0.5938 34 1 -0.4790 -8.1286 0.9933 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873787941.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:51 Heat of formation + Delta-G solvation = -97.938150 kcal Electronic energy + Delta-G solvation = -25153.219884 eV Core-core repulsion = 20859.724252 eV Total energy + Delta-G solvation = -4293.495633 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.023 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.27831 -42.34859 -40.64735 -39.44720 -37.94551 -37.72296 -37.07211 -35.86554 -34.67369 -31.71512 -31.16436 -30.05494 -27.84137 -26.52841 -25.03313 -24.19623 -23.09721 -21.22902 -19.68122 -18.87385 -18.76420 -18.72131 -17.94773 -17.65759 -17.27336 -16.96861 -16.82864 -16.49822 -16.02561 -15.97271 -15.39601 -14.97122 -14.73436 -14.67718 -14.27711 -14.13050 -13.87564 -13.69516 -13.46636 -13.42425 -13.16198 -12.96544 -12.65082 -12.57097 -12.35835 -12.29127 -12.23448 -12.07355 -11.75062 -11.45004 -10.65436 -10.52350 -9.94668 -9.71156 -9.57378 -8.25303 -6.39666 -0.58317 -0.45348 0.28504 0.47655 1.01422 1.12333 1.39465 1.41422 1.52044 1.87621 2.10758 2.32918 2.44316 2.65724 3.05414 3.14289 3.40251 3.70456 3.78417 3.85617 4.39374 4.44231 4.56199 4.62249 4.69684 4.78458 4.85505 5.01063 5.12892 5.23625 5.39744 5.60815 5.71736 5.97882 6.22469 6.49392 6.66341 6.90818 7.30751 8.82482 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.016645 B = 0.002609 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.814382 B =10729.316308 C =11786.546556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.569 5.569 3 C 0.256 3.744 4 C -0.546 4.546 5 H 0.056 0.944 6 C 0.012 3.988 7 N -0.925 5.925 8 Si 0.968 3.032 9 H -0.265 1.265 10 H -0.281 1.281 11 H -0.272 1.272 12 C 0.489 3.511 13 O -0.553 6.553 14 C 0.528 3.472 15 O -0.491 6.491 16 N -0.638 5.638 17 C 0.131 3.869 18 C -0.089 4.089 19 C -0.014 4.014 20 Cl -0.032 7.032 21 C -0.073 4.073 22 C -0.045 4.045 23 Cl -0.023 7.023 24 C 0.084 3.916 25 F -0.122 7.122 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.036 0.964 30 H 0.012 0.988 31 H 0.269 0.731 32 H 0.433 0.567 33 H 0.163 0.837 34 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.260 -24.707 3.049 26.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.299 5.299 3 C 0.136 3.864 4 C -0.584 4.584 5 H 0.074 0.926 6 C -0.187 4.187 7 N -0.565 5.565 8 Si 0.792 3.208 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.196 1.196 12 C 0.271 3.729 13 O -0.432 6.432 14 C 0.311 3.689 15 O -0.365 6.365 16 N -0.285 5.285 17 C 0.035 3.965 18 C -0.110 4.110 19 C -0.042 4.042 20 Cl -0.003 7.003 21 C -0.093 4.093 22 C -0.074 4.074 23 Cl 0.006 6.994 24 C 0.061 3.939 25 F -0.101 7.101 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.113 0.887 29 H 0.054 0.946 30 H 0.030 0.970 31 H 0.078 0.922 32 H 0.272 0.728 33 H 0.181 0.819 34 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -10.425 -24.542 3.181 26.854 hybrid contribution 1.213 0.698 -0.595 1.521 sum -9.212 -23.844 2.586 25.692 Atomic orbital electron populations 1.22227 0.76817 1.04030 1.03143 1.48118 1.09185 1.05799 1.66836 1.19069 0.91481 0.79003 0.96857 1.21618 1.37319 1.06876 0.92636 0.92608 1.25804 0.94713 0.96272 1.01942 1.70029 1.38616 1.14796 1.33010 0.85409 0.78038 0.78268 0.79076 1.19007 1.20601 1.19648 1.19986 0.87368 0.85322 0.80258 1.90744 1.14927 1.87123 1.50405 1.20125 0.87348 0.84687 0.76776 1.90683 1.13123 1.86808 1.45911 1.42943 1.14044 1.02998 1.68512 1.17398 0.93601 0.85518 1.00020 1.21269 0.92482 0.98061 0.99151 1.20529 0.88605 0.94320 1.00708 1.98418 1.16627 1.97311 1.87916 1.21071 0.91530 1.00438 0.96278 1.20525 0.94539 0.89708 1.02603 1.98422 1.79689 1.45647 1.75635 1.17241 0.81345 0.94531 1.00737 1.91560 1.35116 1.95972 1.87432 0.91185 0.90829 0.88703 0.94579 0.97014 0.92218 0.72766 0.81925 0.79882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.61 9.26 127.77 1.18 3.79 16 2 N -0.57 -23.99 2.86 -852.86 -2.44 -26.43 16 3 C 0.26 13.26 5.09 85.63 0.44 13.70 16 4 C -0.55 -30.36 9.39 25.60 0.24 -30.12 16 5 H 0.06 3.08 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.69 5.46 84.65 0.46 1.15 16 7 N -0.93 -54.07 13.29 21.45 0.28 -53.78 16 8 Si 0.97 43.55 29.54 68.60 2.03 45.58 16 9 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 C 0.49 19.78 7.72 87.23 0.67 20.46 16 13 O -0.55 -25.94 16.12 -3.26 -0.05 -26.00 16 14 C 0.53 16.48 7.61 87.24 0.66 17.15 16 15 O -0.49 -14.68 10.60 -3.35 -0.04 -14.72 16 16 N -0.64 -16.74 5.22 -304.69 -1.59 -18.33 16 17 C 0.13 2.93 6.33 38.22 0.24 3.18 16 18 C -0.09 -1.81 8.49 22.42 0.19 -1.62 16 19 C -0.01 -0.22 6.32 22.30 0.14 -0.08 16 20 Cl -0.03 -0.47 28.95 -2.72 -0.08 -0.55 16 21 C -0.07 -0.99 9.61 22.34 0.21 -0.77 16 22 C -0.05 -0.75 6.32 22.34 0.14 -0.61 16 23 Cl -0.02 -0.35 28.61 -2.72 -0.08 -0.43 16 24 C 0.08 1.74 7.28 22.51 0.16 1.90 16 25 F -0.12 -2.79 16.51 44.97 0.74 -2.05 16 26 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 27 H 0.07 2.40 8.03 -2.39 -0.02 2.38 16 28 H 0.09 2.85 5.87 -2.39 -0.01 2.84 16 29 H 0.04 1.89 8.07 -2.39 -0.02 1.87 16 30 H 0.01 0.69 7.51 -2.39 -0.02 0.67 16 31 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 32 H 0.43 11.04 8.12 -92.71 -0.75 10.28 16 33 H 0.16 3.62 6.08 -2.91 -0.02 3.60 16 34 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -64.08 337.86 3.98 -60.10 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 0.44 Total: 8.49 kcal Atomic # 6 Polarization: 23.37 SS G_CDS: 4.75 Total: 28.12 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -3.74 Total: -98.54 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -0.09 Total: -40.72 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.74 Total: -2.05 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.16 Total: -0.98 kcal Total: -64.08 3.98 -60.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873787941.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.834 kcal (2) G-P(sol) polarization free energy of solvation -64.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds